Wall clock time and date at job start Tue Mar 31 2020 06:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34945 * 126.03742 * 2 1 4 4 C 1.35320 * 107.74360 * 180.02562 * 3 2 1 5 5 C 1.50707 * 126.03852 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47181 * 267.74681 * 5 4 3 7 7 C 1.46896 * 110.99837 * 163.01818 * 6 5 4 8 8 C 1.50702 * 109.47188 * 187.32464 * 7 6 5 9 9 H 1.08000 * 120.00233 * 5.15655 * 8 7 6 10 10 C 1.37874 * 120.00401 * 185.15151 * 8 7 6 11 11 N 1.31526 * 119.99910 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00450 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46953 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47128 * 120.00275 * 12 10 8 15 15 H 1.48497 * 109.47303 * 240.00125 * 12 10 8 16 16 C 1.46899 * 111.00237 * 286.97661 * 6 5 4 17 17 C 1.53005 * 109.46924 * 293.20753 * 16 6 5 18 18 C 1.52998 * 117.49581 * 245.47058 * 17 16 6 19 19 C 1.53000 * 117.49609 * 176.81039 * 17 16 6 20 20 C 1.39864 * 107.92085 * 0.02562 * 4 3 2 21 21 C 1.50707 * 125.89834 * 179.73207 * 20 4 3 22 22 C 1.52996 * 117.49665 * 183.64049 * 21 20 4 23 23 C 1.52996 * 117.49567 * 115.01757 * 21 20 4 24 24 N 1.30840 * 108.20290 * 0.02562 * 20 4 3 25 25 H 1.08996 * 109.47047 * 89.99226 * 1 2 3 26 26 H 1.08993 * 109.47104 * 209.99812 * 1 2 3 27 27 H 1.09004 * 109.46293 * 329.99318 * 1 2 3 28 28 H 1.07993 * 126.13176 * 359.97243 * 3 2 1 29 29 H 1.08998 * 109.47178 * 27.74961 * 5 4 3 30 30 H 1.08995 * 109.46930 * 147.74843 * 5 4 3 31 31 H 1.08998 * 109.47283 * 307.32911 * 7 6 5 32 32 H 1.09003 * 109.47163 * 67.33219 * 7 6 5 33 33 H 0.96994 * 120.00007 * 180.02562 * 11 10 8 34 34 H 1.08992 * 109.47128 * 53.20387 * 16 6 5 35 35 H 1.09002 * 109.47031 * 173.20778 * 16 6 5 36 36 H 1.09000 * 115.55117 * 31.13873 * 17 16 6 37 37 H 1.08996 * 117.50058 * 0.02562 * 18 17 16 38 38 H 1.08999 * 117.49722 * 145.02095 * 18 17 16 39 39 H 1.08998 * 117.49342 * 214.97460 * 19 17 16 40 40 H 1.08997 * 117.50212 * 359.97438 * 19 17 16 41 41 H 1.09002 * 115.54909 * 329.35061 * 21 20 4 42 42 H 1.08998 * 117.50598 * 0.02562 * 22 21 20 43 43 H 1.09004 * 117.49941 * 145.03115 * 22 21 20 44 44 H 1.08998 * 117.50105 * 214.97874 * 23 21 20 45 45 H 1.09002 * 117.50097 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7681 1.5452 -0.0002 6 7 5.1974 1.7874 -1.3841 7 6 6.1125 2.9341 -1.4582 8 6 6.3885 3.2639 -2.9026 9 1 5.8665 2.7354 -3.6865 10 6 7.3074 4.2405 -3.2233 11 7 7.9434 4.8840 -2.2687 12 14 7.6490 4.6499 -5.0136 13 1 6.8094 3.7907 -5.8867 14 1 7.3253 6.0771 -5.2656 15 1 9.0834 4.4076 -5.3118 16 6 5.8118 0.5851 -1.9628 17 6 7.1256 0.2848 -1.2385 18 6 8.4197 0.3984 -2.0467 19 6 7.8847 -0.9791 -1.6474 20 6 3.5346 -0.7322 -0.0015 21 6 4.7497 -1.6237 -0.0081 22 6 4.5175 -3.1335 -0.0942 23 6 4.9856 -2.5052 1.2199 24 7 2.2891 -1.1328 -0.0021 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3632 0.8900 0.5140 28 1 1.9282 2.1193 -0.0004 29 1 4.5331 2.4956 0.4789 30 1 5.5701 1.0506 0.5476 31 1 5.6565 3.7951 -0.9696 32 1 7.0481 2.6853 -0.9573 33 1 8.5896 5.5713 -2.4944 34 1 5.1330 -0.2601 -1.8496 35 1 6.0104 0.7524 -3.0215 36 1 7.1608 0.5755 -0.1886 37 1 8.3352 0.6876 -3.0942 38 1 9.3064 0.7635 -1.5283 39 1 8.4196 -1.5196 -0.8666 40 1 7.4480 -1.5968 -2.4321 41 1 5.6267 -1.2194 -0.5135 42 1 3.4860 -3.4820 -0.1466 43 1 5.2419 -3.7229 -0.6564 44 1 6.0179 -2.6812 1.5223 45 1 4.2623 -2.4400 2.0328 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891937708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:55 Heat of formation + Delta-G solvation = 140.536543 kcal Electronic energy + Delta-G solvation = -23896.176321 eV Core-core repulsion = 20724.551806 eV Total energy + Delta-G solvation = -3171.624515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.08145 -38.06300 -36.80902 -35.04403 -32.96071 -32.28186 -30.30136 -27.79000 -26.91695 -26.04333 -23.49992 -22.78593 -22.25589 -21.73059 -21.44008 -20.29918 -19.18815 -18.57522 -16.60076 -16.06802 -15.62943 -15.39336 -15.08832 -14.63087 -14.53629 -14.19532 -13.80717 -13.53171 -13.15516 -12.78255 -12.58938 -12.24516 -12.07641 -11.90447 -11.43401 -11.36844 -11.17012 -11.02936 -10.93872 -10.88020 -10.68496 -10.63155 -10.51120 -10.27460 -9.94669 -9.89400 -9.66914 -9.13562 -9.07217 -8.81703 -8.37098 -7.99448 -7.04084 -5.95504 -3.94887 2.12321 2.69535 2.96157 3.33331 3.41469 3.46083 4.11613 4.41874 4.49120 4.57362 4.77409 5.02026 5.11816 5.16003 5.22003 5.28431 5.34549 5.34924 5.38987 5.40692 5.59964 5.63627 5.73389 5.79865 5.85262 5.93749 6.04781 6.10406 6.15734 6.24979 6.34029 6.42013 6.46938 6.53996 6.60811 6.63335 6.78737 6.95179 7.04703 7.27814 7.39405 7.54612 7.89526 7.99740 8.19159 8.32876 8.67803 9.13201 9.68479 11.15307 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.005187 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.816195 B = 5396.831705 C = 6537.730107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.385 5.385 3 C 0.063 3.937 4 C -0.201 4.201 5 C 0.124 3.876 6 N -0.527 5.527 7 C 0.191 3.809 8 C -0.495 4.495 9 H 0.060 0.940 10 C 0.057 3.943 11 N -0.898 5.898 12 Si 0.889 3.111 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.286 1.286 16 C 0.092 3.908 17 C -0.171 4.171 18 C -0.153 4.153 19 C -0.197 4.197 20 C 0.114 3.886 21 C -0.092 4.092 22 C -0.168 4.168 23 C -0.166 4.166 24 N -0.305 5.305 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.172 0.828 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.022 0.978 32 H 0.004 0.996 33 H 0.258 0.742 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.145 0.855 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.894 -12.013 6.459 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.167 5.167 3 C -0.082 4.082 4 C -0.213 4.213 5 C -0.005 4.005 6 N -0.250 5.250 7 C 0.066 3.934 8 C -0.534 4.534 9 H 0.078 0.922 10 C -0.143 4.143 11 N -0.539 5.539 12 Si 0.717 3.283 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.037 4.037 17 C -0.191 4.191 18 C -0.190 4.190 19 C -0.235 4.235 20 C -0.052 4.052 21 C -0.112 4.112 22 C -0.206 4.206 23 C -0.205 4.205 24 N -0.127 5.127 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.189 0.811 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.040 0.960 32 H 0.022 0.978 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.162 0.838 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.179 -12.699 6.197 17.415 hybrid contribution 1.417 1.065 -0.499 1.841 sum -8.762 -11.634 5.698 15.640 Atomic orbital electron populations 1.21728 0.74794 1.03851 1.02989 1.48206 1.06064 1.03878 1.58576 1.22275 0.90670 0.93081 1.02210 1.19958 0.94860 0.92823 1.13645 1.20305 0.91903 0.96640 0.91670 1.62336 1.42047 1.05194 1.15409 1.19750 0.89493 0.86676 0.97467 1.21131 1.21357 1.18871 0.92030 0.92197 1.24914 0.96108 0.96382 0.96930 1.69966 1.27330 1.25017 1.31558 0.86581 0.77867 0.78161 0.85653 1.19790 1.21203 1.21216 1.21820 0.90264 0.92542 0.99072 1.22945 0.95676 1.00354 1.00091 1.22813 0.97288 0.97563 1.01355 1.22956 1.05699 0.91297 1.03569 1.21204 0.91763 0.92994 0.99242 1.20896 0.96178 0.90451 1.03636 1.22909 1.02713 0.94598 1.00356 1.22930 1.02165 1.03673 0.91706 1.77130 1.01111 1.08031 1.26476 0.91159 0.89880 0.89795 0.81111 0.91215 0.94580 0.96044 0.97789 0.93216 0.91799 0.90513 0.88667 0.88504 0.89798 0.89905 0.89420 0.83789 0.88394 0.88622 0.88461 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.97 11.47 59.85 0.69 1.66 16 2 N -0.38 -5.43 4.01 -68.16 -0.27 -5.70 16 3 C 0.06 0.94 11.40 -17.22 -0.20 0.74 16 4 C -0.20 -3.40 5.21 -105.05 -0.55 -3.95 16 5 C 0.12 2.27 5.14 -4.97 -0.03 2.24 16 6 N -0.53 -11.16 4.66 -237.52 -1.11 -12.26 16 7 C 0.19 4.80 4.45 -4.98 -0.02 4.78 16 8 C -0.50 -13.50 8.42 -34.44 -0.29 -13.79 16 9 H 0.06 1.66 7.11 -52.49 -0.37 1.28 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 12 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 C 0.09 1.78 4.82 -3.82 -0.02 1.76 16 17 C -0.17 -3.05 2.37 -90.62 -0.22 -3.27 16 18 C -0.15 -2.78 10.18 -26.69 -0.27 -3.06 16 19 C -0.20 -2.96 9.53 -26.69 -0.25 -3.22 16 20 C 0.11 1.87 6.05 -82.40 -0.50 1.37 16 21 C -0.09 -1.34 5.07 -91.77 -0.47 -1.80 16 22 C -0.17 -2.09 10.14 -26.73 -0.27 -2.36 16 23 C -0.17 -2.04 10.23 -26.73 -0.27 -2.31 16 24 N -0.31 -4.96 12.12 33.67 0.41 -4.56 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.17 2.12 8.06 -52.49 -0.42 1.69 16 29 H 0.07 1.26 7.83 -51.93 -0.41 0.85 16 30 H 0.04 0.65 5.97 -51.93 -0.31 0.34 16 31 H 0.02 0.58 7.92 -51.93 -0.41 0.17 16 32 H 0.00 0.11 6.80 -51.93 -0.35 -0.24 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 34 H 0.06 1.18 4.58 -51.93 -0.24 0.94 16 35 H 0.08 1.65 6.61 -51.93 -0.34 1.31 16 36 H 0.10 1.76 6.30 -51.93 -0.33 1.43 16 37 H 0.10 1.90 8.04 -51.93 -0.42 1.48 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.14 2.17 3.27 -51.93 -0.17 2.00 16 42 H 0.10 1.27 7.87 -51.93 -0.41 0.86 16 43 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 356.83 15.07 5.38 5.38 Total: -1.00 -31.16 356.83 -9.76 -40.92 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.12 Total: 4.92 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -2.76 Total: -19.70 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.24 Total: -47.99 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.16 -9.76 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891937708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.454 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds