Wall clock time and date at job start Tue Mar 31 2020 06:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34945 * 126.03742 * 2 1 4 4 C 1.35320 * 107.74360 * 180.02562 * 3 2 1 5 5 C 1.50707 * 126.03852 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47181 * 267.74681 * 5 4 3 7 7 C 1.46896 * 110.99837 * 163.01818 * 6 5 4 8 8 C 1.50702 * 109.47188 * 187.32464 * 7 6 5 9 9 H 1.08000 * 120.00233 * 5.15655 * 8 7 6 10 10 C 1.37874 * 120.00401 * 185.15151 * 8 7 6 11 11 N 1.31526 * 119.99910 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00450 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46953 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47128 * 120.00275 * 12 10 8 15 15 H 1.48497 * 109.47303 * 240.00125 * 12 10 8 16 16 C 1.46899 * 111.00237 * 286.97661 * 6 5 4 17 17 C 1.53005 * 109.46924 * 293.20753 * 16 6 5 18 18 C 1.52998 * 117.49581 * 245.47058 * 17 16 6 19 19 C 1.53000 * 117.49609 * 176.81039 * 17 16 6 20 20 C 1.39864 * 107.92085 * 0.02562 * 4 3 2 21 21 C 1.50707 * 125.89834 * 179.73207 * 20 4 3 22 22 C 1.52996 * 117.49665 * 183.64049 * 21 20 4 23 23 C 1.52996 * 117.49567 * 115.01757 * 21 20 4 24 24 N 1.30840 * 108.20290 * 0.02562 * 20 4 3 25 25 H 1.08996 * 109.47047 * 89.99226 * 1 2 3 26 26 H 1.08993 * 109.47104 * 209.99812 * 1 2 3 27 27 H 1.09004 * 109.46293 * 329.99318 * 1 2 3 28 28 H 1.07993 * 126.13176 * 359.97243 * 3 2 1 29 29 H 1.08998 * 109.47178 * 27.74961 * 5 4 3 30 30 H 1.08995 * 109.46930 * 147.74843 * 5 4 3 31 31 H 1.08998 * 109.47283 * 307.32911 * 7 6 5 32 32 H 1.09003 * 109.47163 * 67.33219 * 7 6 5 33 33 H 0.96994 * 120.00007 * 180.02562 * 11 10 8 34 34 H 1.08992 * 109.47128 * 53.20387 * 16 6 5 35 35 H 1.09002 * 109.47031 * 173.20778 * 16 6 5 36 36 H 1.09000 * 115.55117 * 31.13873 * 17 16 6 37 37 H 1.08996 * 117.50058 * 0.02562 * 18 17 16 38 38 H 1.08999 * 117.49722 * 145.02095 * 18 17 16 39 39 H 1.08998 * 117.49342 * 214.97460 * 19 17 16 40 40 H 1.08997 * 117.50212 * 359.97438 * 19 17 16 41 41 H 1.09002 * 115.54909 * 329.35061 * 21 20 4 42 42 H 1.08998 * 117.50598 * 0.02562 * 22 21 20 43 43 H 1.09004 * 117.49941 * 145.03115 * 22 21 20 44 44 H 1.08998 * 117.50105 * 214.97874 * 23 21 20 45 45 H 1.09002 * 117.50097 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7681 1.5452 -0.0002 6 7 5.1974 1.7874 -1.3841 7 6 6.1125 2.9341 -1.4582 8 6 6.3885 3.2639 -2.9026 9 1 5.8665 2.7354 -3.6865 10 6 7.3074 4.2405 -3.2233 11 7 7.9434 4.8840 -2.2687 12 14 7.6490 4.6499 -5.0136 13 1 6.8094 3.7907 -5.8867 14 1 7.3253 6.0771 -5.2656 15 1 9.0834 4.4076 -5.3118 16 6 5.8118 0.5851 -1.9628 17 6 7.1256 0.2848 -1.2385 18 6 8.4197 0.3984 -2.0467 19 6 7.8847 -0.9791 -1.6474 20 6 3.5346 -0.7322 -0.0015 21 6 4.7497 -1.6237 -0.0081 22 6 4.5175 -3.1335 -0.0942 23 6 4.9856 -2.5052 1.2199 24 7 2.2891 -1.1328 -0.0021 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3632 0.8900 0.5140 28 1 1.9282 2.1193 -0.0004 29 1 4.5331 2.4956 0.4789 30 1 5.5701 1.0506 0.5476 31 1 5.6565 3.7951 -0.9696 32 1 7.0481 2.6853 -0.9573 33 1 8.5896 5.5713 -2.4944 34 1 5.1330 -0.2601 -1.8496 35 1 6.0104 0.7524 -3.0215 36 1 7.1608 0.5755 -0.1886 37 1 8.3352 0.6876 -3.0942 38 1 9.3064 0.7635 -1.5283 39 1 8.4196 -1.5196 -0.8666 40 1 7.4480 -1.5968 -2.4321 41 1 5.6267 -1.2194 -0.5135 42 1 3.4860 -3.4820 -0.1466 43 1 5.2419 -3.7229 -0.6564 44 1 6.0179 -2.6812 1.5223 45 1 4.2623 -2.4400 2.0328 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891937708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:55 Heat of formation + Delta-G solvation = 122.502728 kcal Electronic energy + Delta-G solvation = -23896.958326 eV Core-core repulsion = 20724.551806 eV Total energy + Delta-G solvation = -3172.406520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.24232 -39.55782 -37.86127 -36.56603 -34.71801 -33.65307 -31.65591 -29.36788 -28.33463 -27.48201 -25.20374 -23.85654 -23.24819 -23.12744 -23.03241 -21.59602 -20.57522 -19.81349 -18.31648 -17.55503 -17.08815 -16.69360 -16.41005 -16.05866 -15.76648 -15.64175 -15.31533 -14.97624 -14.31251 -14.04069 -13.94278 -13.56353 -13.41344 -13.33106 -12.97655 -12.75465 -12.58053 -12.48611 -12.47963 -12.32327 -12.31990 -12.17662 -11.94424 -11.65920 -11.46946 -11.26999 -11.03073 -10.98529 -10.59009 -10.49634 -9.94244 -9.21441 -8.75412 -8.10563 -6.17317 0.98087 1.40553 1.42464 1.54095 1.70202 1.76449 2.45276 3.02828 3.10340 3.22812 3.56187 3.67695 3.76126 3.94306 4.06007 4.14793 4.16450 4.23516 4.24994 4.43808 4.46328 4.48595 4.55614 4.66956 4.70690 4.81493 4.82580 4.84990 4.87485 5.02048 5.02258 5.08946 5.15387 5.26068 5.31672 5.34189 5.37406 5.40853 5.47411 5.54336 5.73665 5.77608 6.18649 6.22493 6.49142 6.80426 6.83843 6.99295 7.50882 8.99906 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.005187 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.816195 B = 5396.831705 C = 6537.730107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.381 5.381 3 C 0.068 3.932 4 C -0.233 4.233 5 C 0.133 3.867 6 N -0.535 5.535 7 C 0.210 3.790 8 C -0.502 4.502 9 H 0.052 0.948 10 C 0.010 3.990 11 N -0.931 5.931 12 Si 0.953 3.047 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.280 1.280 16 C 0.102 3.898 17 C -0.180 4.180 18 C -0.177 4.177 19 C -0.154 4.154 20 C 0.107 3.893 21 C -0.117 4.117 22 C -0.157 4.157 23 C -0.154 4.154 24 N -0.325 5.325 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.112 0.888 28 H 0.194 0.806 29 H 0.064 0.936 30 H 0.036 0.964 31 H -0.005 1.005 32 H -0.017 1.017 33 H 0.260 0.740 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.138 0.862 42 H 0.090 0.910 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.708 -13.615 6.293 17.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.163 5.163 3 C -0.079 4.079 4 C -0.245 4.245 5 C 0.005 3.995 6 N -0.258 5.258 7 C 0.084 3.916 8 C -0.541 4.541 9 H 0.070 0.930 10 C -0.187 4.187 11 N -0.573 5.573 12 Si 0.779 3.221 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.206 1.206 16 C -0.026 4.026 17 C -0.200 4.200 18 C -0.214 4.214 19 C -0.191 4.191 20 C -0.058 4.058 21 C -0.137 4.137 22 C -0.194 4.194 23 C -0.192 4.192 24 N -0.148 5.148 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.131 0.869 28 H 0.211 0.789 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.013 0.987 32 H 0.000 1.000 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.155 0.845 42 H 0.108 0.892 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.026 -14.333 6.033 19.063 hybrid contribution 1.558 1.554 -0.404 2.238 sum -9.467 -12.779 5.629 16.871 Atomic orbital electron populations 1.22138 0.71938 1.05844 1.04289 1.48613 1.07648 1.03043 1.57032 1.22626 0.90405 0.94290 1.00570 1.19889 0.94891 0.93160 1.16524 1.20175 0.92780 0.96818 0.89747 1.62239 1.40974 1.04921 1.17626 1.19348 0.88962 0.87373 0.95879 1.21325 1.21228 1.18739 0.92805 0.92980 1.25661 0.95903 0.96234 1.00943 1.70079 1.27961 1.25616 1.33594 0.85585 0.77833 0.77937 0.80789 1.19257 1.20717 1.20637 1.21670 0.91434 0.92079 0.97460 1.22759 0.94635 1.03326 0.99238 1.22752 0.97368 1.01122 1.00150 1.23039 1.02725 0.89700 1.03637 1.21453 0.92446 0.92979 0.98953 1.20916 0.95510 0.91445 1.05819 1.22956 1.02873 0.93081 1.00494 1.22986 1.03130 1.01948 0.91103 1.77076 1.01290 1.09177 1.27300 0.90132 0.88891 0.86913 0.78917 0.91773 0.94626 0.98709 0.99972 0.93068 0.90452 0.93152 0.89418 0.90567 0.90301 0.87152 0.87884 0.84506 0.89172 0.86639 0.86563 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.51 11.47 127.77 1.47 2.97 16 2 N -0.38 -10.12 4.01 -369.57 -1.48 -11.60 16 3 C 0.07 1.95 11.40 83.54 0.95 2.91 16 4 C -0.23 -7.79 5.21 -20.14 -0.10 -7.89 16 5 C 0.13 4.98 5.14 85.56 0.44 5.42 16 6 N -0.53 -23.25 4.66 -905.38 -4.22 -27.47 16 7 C 0.21 11.01 4.45 85.56 0.38 11.39 16 8 C -0.50 -28.15 8.42 25.60 0.22 -27.93 16 9 H 0.05 2.95 7.11 -2.91 -0.02 2.93 16 10 C 0.01 0.58 5.46 84.65 0.46 1.04 16 11 N -0.93 -55.49 13.29 21.45 0.28 -55.20 16 12 Si 0.95 44.61 29.54 68.60 2.03 46.64 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 14 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 16 C 0.10 4.02 4.82 86.31 0.42 4.43 16 17 C -0.18 -6.43 2.37 -10.79 -0.03 -6.46 16 18 C -0.18 -6.48 10.18 30.62 0.31 -6.17 16 19 C -0.15 -4.29 9.53 30.62 0.29 -4.00 16 20 C 0.11 3.43 6.05 43.10 0.26 3.69 16 21 C -0.12 -3.24 5.07 -11.54 -0.06 -3.30 16 22 C -0.16 -3.55 10.14 30.59 0.31 -3.24 16 23 C -0.15 -3.44 10.23 30.59 0.31 -3.12 16 24 N -0.33 -10.19 12.12 -47.38 -0.57 -10.77 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.19 4.46 8.06 -2.91 -0.02 4.44 16 29 H 0.06 2.40 7.83 -2.39 -0.02 2.38 16 30 H 0.04 1.32 5.97 -2.39 -0.01 1.30 16 31 H -0.01 -0.29 7.92 -2.39 -0.02 -0.31 16 32 H -0.02 -0.98 6.80 -2.39 -0.02 -1.00 16 33 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 34 H 0.08 2.85 4.58 -2.39 -0.01 2.84 16 35 H 0.05 2.23 6.61 -2.39 -0.02 2.21 16 36 H 0.09 3.29 6.30 -2.39 -0.02 3.27 16 37 H 0.08 3.08 8.04 -2.39 -0.02 3.06 16 38 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.14 3.93 3.27 -2.39 -0.01 3.92 16 42 H 0.09 2.19 7.87 -2.39 -0.02 2.17 16 43 H 0.12 2.12 8.14 -2.39 -0.02 2.11 16 44 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -68.40 356.83 2.64 -65.75 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.98 Total: 22.92 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: 5.63 Total: -30.27 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -5.99 Total: -105.04 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.40 2.64 -65.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891937708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.257 kcal (2) G-P(sol) polarization free energy of solvation -68.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds