Wall clock time and date at job start Tue Mar 31 2020 06:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99666 * 2 1 4 4 H 1.48498 * 109.47357 * 270.00554 * 3 2 1 5 5 H 1.48506 * 109.47000 * 30.00531 * 3 2 1 6 6 H 1.48498 * 109.47010 * 150.00172 * 3 2 1 7 7 C 1.37875 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00199 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99770 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.46916 * 179.97438 * 9 7 2 11 11 C 1.35942 * 117.00105 * 179.97438 * 10 9 7 12 12 C 1.38709 * 120.04908 * 0.26119 * 11 10 9 13 13 C 1.38145 * 119.96735 * 180.27438 * 12 11 10 14 14 C 1.38358 * 120.06743 * 359.46217 * 13 12 11 15 15 Br 1.89099 * 119.95172 * 180.27904 * 14 13 12 16 16 C 1.38331 * 120.09604 * 0.25883 * 14 13 12 17 17 C 1.38244 * 120.03299 * 0.02562 * 16 14 13 18 18 Cl 1.73603 * 120.03371 * 180.02562 * 17 16 14 19 19 H 0.97000 * 120.00614 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47694 * 60.00113 * 9 7 2 21 21 H 1.09002 * 109.47107 * 300.00213 * 9 7 2 22 22 H 1.07997 * 120.01537 * 359.97438 * 12 11 10 23 23 H 1.08002 * 119.96985 * 179.74755 * 13 12 11 24 24 H 1.07998 * 119.97907 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 2.1798 -3.5852 -0.0017 11 6 1.6603 -4.8414 -0.0014 12 6 0.2854 -5.0245 -0.0053 13 6 -0.2408 -6.3018 0.0008 14 6 0.6024 -7.3988 -0.0003 15 35 -0.1213 -9.1458 0.0001 16 6 1.9740 -7.2194 -0.0022 17 6 2.5049 -5.9430 -0.0024 18 17 4.2263 -5.7179 -0.0054 19 1 -0.4851 0.8400 0.0004 20 1 0.6242 -2.5568 -0.8902 21 1 0.6248 -2.5570 0.8897 22 1 -0.3735 -4.1688 -0.0083 23 1 -1.3113 -6.4443 0.0018 24 1 2.6304 -8.0770 -0.0027 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034936604.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:08 Heat of formation + Delta-G solvation = -28.259180 kcal Electronic energy + Delta-G solvation = -12880.409546 eV Core-core repulsion = 10251.970338 eV Total energy + Delta-G solvation = -2628.439209 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.945 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.73313 -37.07995 -36.12390 -33.05258 -31.61606 -30.80652 -28.81690 -27.33011 -23.77568 -22.30704 -21.36850 -17.88931 -16.72191 -15.83556 -15.67993 -15.01499 -14.67459 -14.38650 -13.75977 -13.10900 -13.08271 -12.13606 -11.84777 -11.75186 -11.18609 -11.11267 -11.06710 -10.70369 -10.58713 -10.27914 -10.27095 -9.98912 -9.41974 -8.81509 -8.68114 -7.73993 -6.33513 -4.37590 1.22324 1.30755 1.63194 2.47031 3.20110 3.25649 3.30188 3.65850 3.90409 4.32761 4.91534 5.03032 5.04378 5.25764 5.52501 5.78793 5.91869 6.16231 6.32813 6.64981 6.72216 6.97330 7.56625 7.81533 8.19119 8.72904 9.28106 10.77647 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.031487 B = 0.004204 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.048499 B = 6658.593772 C = 7532.497102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.914 3.086 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.189 3.811 10 O -0.295 6.295 11 C 0.181 3.819 12 C -0.198 4.198 13 C -0.043 4.043 14 C -0.140 4.140 15 Br -0.058 7.058 16 C -0.045 4.045 17 C -0.083 4.083 18 Cl -0.055 7.055 19 H 0.268 0.732 20 H 0.026 0.974 21 H 0.026 0.974 22 H 0.152 0.848 23 H 0.135 0.865 24 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 -16.843 -0.001 16.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.741 3.259 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.563 4.563 8 H 0.091 0.909 9 C 0.117 3.883 10 O -0.207 6.207 11 C 0.130 3.870 12 C -0.218 4.218 13 C -0.063 4.063 14 C -0.220 4.220 15 Br 0.026 6.974 16 C -0.066 4.066 17 C -0.111 4.111 18 Cl -0.026 7.026 19 H 0.078 0.922 20 H 0.044 0.956 21 H 0.044 0.956 22 H 0.169 0.831 23 H 0.153 0.847 24 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.749 -17.241 0.003 17.257 hybrid contribution 0.338 1.332 -0.009 1.374 sum -0.411 -15.909 -0.006 15.914 Atomic orbital electron populations 1.69934 1.06143 1.27807 1.49325 1.24922 0.95057 0.99576 0.94492 0.86227 0.79661 0.81583 0.78467 1.20217 1.20851 1.19407 1.20930 0.94389 0.88408 1.52564 0.90925 1.20821 0.88669 0.81616 0.97225 1.86267 1.38968 1.11116 1.84308 1.19093 0.91052 0.86668 0.90201 1.21465 0.94076 0.98496 1.07784 1.20950 0.99757 0.90577 0.95007 1.21277 0.94387 0.90887 1.15412 1.96628 1.85133 1.17475 1.98146 1.20661 0.93411 0.95354 0.97160 1.20058 0.85345 0.92216 1.13506 1.98351 1.09631 1.97470 1.97167 0.92209 0.95631 0.95613 0.83075 0.84670 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 13.29 55.43 0.74 -24.27 14 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 14 3 Si 0.91 20.78 29.54 -169.99 -5.02 15.75 14 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 14 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 14 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 14 7 C -0.53 -14.45 9.43 -34.44 -0.32 -14.77 14 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 14 9 C 0.19 4.74 4.49 36.01 0.16 4.90 14 10 O -0.30 -6.76 9.58 -19.56 -0.19 -6.95 14 11 C 0.18 3.47 6.68 -39.20 -0.26 3.21 14 12 C -0.20 -3.40 9.04 -39.44 -0.36 -3.76 14 13 C -0.04 -0.62 9.78 -39.57 -0.39 -1.01 14 14 C -0.14 -1.95 6.22 -39.50 -0.25 -2.19 14 15 Br -0.06 -0.68 33.70 -68.01 -2.29 -2.97 14 16 C -0.05 -0.65 9.56 -39.55 -0.38 -1.03 14 17 C -0.08 -1.41 6.33 -39.37 -0.25 -1.66 14 18 Cl -0.05 -0.90 28.50 -51.86 -1.48 -2.38 14 19 H 0.27 7.04 8.31 -40.82 -0.34 6.70 14 20 H 0.03 0.66 7.65 -51.93 -0.40 0.26 14 21 H 0.03 0.66 7.67 -51.93 -0.40 0.27 14 22 H 0.15 2.66 6.30 -52.49 -0.33 2.33 14 23 H 0.14 1.62 8.06 -52.49 -0.42 1.20 14 24 H 0.14 1.70 8.06 -52.49 -0.42 1.28 14 LS Contribution 256.79 15.07 3.87 3.87 Total: -1.00 -27.35 256.79 -8.03 -35.38 By element: Atomic # 1 Polarization: -2.20 SS G_CDS: -1.52 Total: -3.71 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -2.14 Total: -14.72 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.74 Total: -24.27 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.19 Total: -6.95 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.48 Total: -2.38 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -2.29 Total: -2.97 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -27.35 -8.03 -35.38 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034936604.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.116 kcal (2) G-P(sol) polarization free energy of solvation -27.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds