Wall clock time and date at job start Tue Mar 31 2020 06:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99666 * 2 1 4 4 H 1.48498 * 109.47357 * 270.00554 * 3 2 1 5 5 H 1.48506 * 109.47000 * 30.00531 * 3 2 1 6 6 H 1.48498 * 109.47010 * 150.00172 * 3 2 1 7 7 C 1.37875 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00199 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99770 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.46916 * 179.97438 * 9 7 2 11 11 C 1.35942 * 117.00105 * 179.97438 * 10 9 7 12 12 C 1.38709 * 120.04908 * 0.26119 * 11 10 9 13 13 C 1.38145 * 119.96735 * 180.27438 * 12 11 10 14 14 C 1.38358 * 120.06743 * 359.46217 * 13 12 11 15 15 Br 1.89099 * 119.95172 * 180.27904 * 14 13 12 16 16 C 1.38331 * 120.09604 * 0.25883 * 14 13 12 17 17 C 1.38244 * 120.03299 * 0.02562 * 16 14 13 18 18 Cl 1.73603 * 120.03371 * 180.02562 * 17 16 14 19 19 H 0.97000 * 120.00614 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47694 * 60.00113 * 9 7 2 21 21 H 1.09002 * 109.47107 * 300.00213 * 9 7 2 22 22 H 1.07997 * 120.01537 * 359.97438 * 12 11 10 23 23 H 1.08002 * 119.96985 * 179.74755 * 13 12 11 24 24 H 1.07998 * 119.97907 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 2.1798 -3.5852 -0.0017 11 6 1.6603 -4.8414 -0.0014 12 6 0.2854 -5.0245 -0.0053 13 6 -0.2408 -6.3018 0.0008 14 6 0.6024 -7.3988 -0.0003 15 35 -0.1213 -9.1458 0.0001 16 6 1.9740 -7.2194 -0.0022 17 6 2.5049 -5.9430 -0.0024 18 17 4.2263 -5.7179 -0.0054 19 1 -0.4851 0.8400 0.0004 20 1 0.6242 -2.5568 -0.8902 21 1 0.6248 -2.5570 0.8897 22 1 -0.3735 -4.1688 -0.0083 23 1 -1.3113 -6.4443 0.0018 24 1 2.6304 -8.0770 -0.0027 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034936604.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:08 Heat of formation + Delta-G solvation = -42.729851 kcal Electronic energy + Delta-G solvation = -12881.037041 eV Core-core repulsion = 10251.970338 eV Total energy + Delta-G solvation = -2629.066704 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.945 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.15805 -38.59037 -37.42978 -35.08655 -32.84770 -32.08618 -30.37758 -29.00179 -25.54399 -23.69529 -22.84130 -19.44850 -18.59715 -17.36066 -17.09076 -16.69436 -16.40458 -15.74276 -15.03734 -14.76577 -14.53694 -13.82441 -13.16676 -13.03587 -12.95453 -12.91148 -12.58916 -12.33806 -12.15637 -11.83479 -11.42673 -11.29753 -11.29157 -10.70025 -10.06549 -9.14537 -8.39965 -6.53046 -0.04356 0.01031 0.48141 1.16654 1.40621 1.42082 1.54044 2.21998 2.35884 2.55145 2.95718 3.64892 3.80598 3.98497 4.22657 4.50016 4.62414 4.71510 4.95074 4.95737 5.06891 5.38090 5.50745 5.80024 6.39513 6.67653 7.18177 8.71829 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.031487 B = 0.004204 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.048499 B = 6658.593772 C = 7532.497102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.017 3.983 3 Si 0.982 3.018 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.556 4.556 8 H 0.065 0.935 9 C 0.208 3.792 10 O -0.317 6.317 11 C 0.142 3.858 12 C -0.205 4.205 13 C -0.035 4.035 14 C -0.133 4.133 15 Br -0.025 7.025 16 C -0.036 4.036 17 C -0.088 4.088 18 Cl -0.055 7.055 19 H 0.274 0.726 20 H 0.011 0.989 21 H 0.011 0.989 22 H 0.138 0.862 23 H 0.163 0.837 24 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.724 -18.057 -0.011 18.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.805 3.195 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.593 4.593 8 H 0.083 0.917 9 C 0.135 3.865 10 O -0.230 6.230 11 C 0.093 3.907 12 C -0.225 4.225 13 C -0.054 4.054 14 C -0.213 4.213 15 Br 0.060 6.940 16 C -0.057 4.057 17 C -0.116 4.116 18 Cl -0.026 7.026 19 H 0.083 0.917 20 H 0.028 0.972 21 H 0.028 0.972 22 H 0.156 0.844 23 H 0.181 0.819 24 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.797 -18.492 -0.009 18.509 hybrid contribution 0.281 1.464 -0.006 1.491 sum -0.516 -17.028 -0.014 17.036 Atomic orbital electron populations 1.70023 1.07532 1.29039 1.49482 1.25843 0.95958 1.03028 0.93513 0.85192 0.78407 0.77041 0.78896 1.19284 1.19767 1.18992 1.21262 0.94346 0.90087 1.53606 0.91692 1.20341 0.88379 0.82160 0.95653 1.86180 1.38589 1.12155 1.86029 1.19428 0.92457 0.85724 0.93105 1.21436 0.93186 0.99518 1.08359 1.21206 1.01261 0.89444 0.93516 1.21548 0.94301 0.92434 1.13004 1.96682 1.84649 1.14667 1.97965 1.20963 0.94101 0.94971 0.95630 1.20226 0.85297 0.92482 1.13582 1.98346 1.09506 1.97564 1.97187 0.91700 0.97165 0.97154 0.84392 0.81943 0.81420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.35 13.29 21.45 0.28 -52.07 14 2 C 0.02 0.91 5.46 84.65 0.46 1.37 14 3 Si 0.98 42.60 29.54 68.60 2.03 44.63 14 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 14 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 14 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 14 7 C -0.56 -31.51 9.43 25.60 0.24 -31.27 14 8 H 0.06 3.68 7.81 -2.92 -0.02 3.66 14 9 C 0.21 10.92 4.49 71.24 0.32 11.24 14 10 O -0.32 -15.12 9.58 -92.90 -0.89 -16.01 14 11 C 0.14 5.56 6.68 22.52 0.15 5.71 14 12 C -0.21 -7.12 9.04 22.36 0.20 -6.92 14 13 C -0.03 -0.94 9.78 22.28 0.22 -0.72 14 14 C -0.13 -3.36 6.22 22.32 0.14 -3.22 14 15 Br -0.02 -0.49 33.70 -20.37 -0.69 -1.18 14 16 C -0.04 -0.97 9.56 22.29 0.21 -0.75 14 17 C -0.09 -2.92 6.33 22.41 0.14 -2.78 14 18 Cl -0.05 -1.78 28.50 -2.72 -0.08 -1.86 14 19 H 0.27 14.44 8.31 -92.71 -0.77 13.67 14 20 H 0.01 0.57 7.65 -2.39 -0.02 0.55 14 21 H 0.01 0.58 7.67 -2.39 -0.02 0.56 14 22 H 0.14 5.10 6.30 -2.91 -0.02 5.08 14 23 H 0.16 3.47 8.06 -2.91 -0.02 3.45 14 24 H 0.17 3.52 8.06 -2.91 -0.02 3.49 14 Total: -1.00 -58.99 256.79 3.97 -55.02 By element: Atomic # 1 Polarization: -2.41 SS G_CDS: 1.23 Total: -1.18 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 2.09 Total: -27.34 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.28 Total: -52.07 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.89 Total: -16.01 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.08 Total: -1.86 kcal Atomic # 35 Polarization: -0.49 SS G_CDS: -0.69 Total: -1.18 kcal Total: -58.99 3.97 -55.02 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034936604.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.286 kcal (2) G-P(sol) polarization free energy of solvation -58.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds