Wall clock time and date at job start Tue Mar 31 2020 06:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86802 * 120.00100 * 2 1 4 4 H 1.48499 * 109.46875 * 269.99823 * 3 2 1 5 5 H 1.48501 * 109.47078 * 29.99790 * 3 2 1 6 6 H 1.48491 * 109.46940 * 149.99420 * 3 2 1 7 7 C 1.38649 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99758 * 0.02562 * 7 2 1 9 9 O 1.34823 * 120.00289 * 180.02562 * 7 2 1 10 10 C 1.35747 * 117.00471 * 185.06676 * 9 7 2 11 11 C 1.38881 * 120.07155 * 354.39712 * 10 9 7 12 12 C 1.38092 * 119.93857 * 180.02562 * 11 10 9 13 13 C 1.38320 * 120.08293 * 359.97438 * 12 11 10 14 14 C 1.38275 * 120.14272 * 0.02562 * 13 12 11 15 15 C 1.38178 * 120.06169 * 359.97438 * 14 13 12 16 16 I 2.09498 * 120.04087 * 179.97438 * 15 14 13 17 17 H 0.97004 * 119.99901 * 0.02562 * 1 2 3 18 18 H 1.08006 * 120.02926 * 0.02562 * 11 10 9 19 19 H 1.08006 * 119.95742 * 180.02562 * 12 11 10 20 20 H 1.07991 * 119.92945 * 180.02562 * 13 12 11 21 21 H 1.07991 * 119.96909 * 179.72491 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5470 1.4401 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 1.4687 -2.1361 0.0005 9 8 3.3571 -1.2008 0.0011 10 6 3.9734 -2.4056 -0.1052 11 6 3.2236 -3.5745 -0.0911 12 6 3.8535 -4.7987 -0.1989 13 6 5.2298 -4.8619 -0.3214 14 6 5.9796 -3.7002 -0.3359 15 6 5.3555 -2.4721 -0.2284 16 53 6.4923 -0.7125 -0.2496 17 1 -0.4850 0.8401 -0.0004 18 1 2.1488 -3.5262 0.0041 19 1 3.2706 -5.7079 -0.1884 20 1 5.7198 -5.8205 -0.4060 21 1 7.0544 -3.7529 -0.4272 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035234324.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:33 Heat of formation + Delta-G solvation = -4.670682 kcal Electronic energy + Delta-G solvation = -10046.145864 eV Core-core repulsion = 7939.569897 eV Total energy + Delta-G solvation = -2106.575967 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 289.954 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.98812 -38.30773 -34.50548 -33.14740 -30.90088 -28.69042 -27.22631 -23.33582 -22.67577 -19.81641 -19.04897 -16.71987 -16.48212 -15.83156 -15.64195 -15.40114 -14.35999 -14.09387 -13.84243 -13.31553 -12.65961 -12.48265 -12.38483 -11.88773 -11.26302 -11.19909 -10.92730 -10.61749 -9.72955 -9.15516 -8.52762 -6.24822 0.31860 0.39863 0.59074 1.30900 1.34003 1.53651 2.27215 2.71262 2.94866 3.07891 4.02564 4.20601 4.44948 4.49729 4.80033 5.00477 5.28047 5.44575 5.59501 5.68021 5.84058 6.12503 6.82277 7.50973 8.57999 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.021570 B = 0.012203 C = 0.007819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.769555 B = 2293.988764 C = 3580.330186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.022 3.978 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.246 1.246 7 C -0.397 4.397 8 H 0.087 0.913 9 O -0.222 6.222 10 C 0.146 3.854 11 C -0.237 4.237 12 C -0.055 4.055 13 C -0.179 4.179 14 C -0.042 4.042 15 C -0.179 4.179 16 I -0.051 7.051 17 H 0.284 0.716 18 H 0.117 0.883 19 H 0.150 0.850 20 H 0.162 0.838 21 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.147 -5.000 -0.817 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.177 4.177 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.170 1.170 7 C -0.473 4.473 8 H 0.104 0.896 9 O -0.128 6.128 10 C 0.093 3.907 11 C -0.258 4.258 12 C -0.074 4.074 13 C -0.199 4.199 14 C -0.063 4.063 15 C -0.320 4.320 16 I 0.098 6.902 17 H 0.094 0.906 18 H 0.135 0.865 19 H 0.168 0.832 20 H 0.180 0.820 21 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 15.830 -3.416 -0.803 16.215 hybrid contribution -1.229 -0.301 0.034 1.266 sum 14.601 -3.717 -0.769 15.086 Atomic orbital electron populations 1.69711 1.06804 1.29528 1.49753 1.25091 0.95636 1.01618 0.95363 0.85573 0.80025 0.78224 0.79612 1.19261 1.19616 1.16977 1.20710 0.77942 0.96160 1.52528 0.89587 1.83612 1.21204 1.26328 1.81631 1.19248 0.91732 0.86108 0.93579 1.21387 1.00565 0.92845 1.10982 1.21355 0.95547 0.96571 0.93898 1.21283 0.93336 0.98815 1.06478 1.21085 1.00617 0.89589 0.94960 1.23458 0.92013 0.96965 1.19545 1.96436 1.64855 1.29912 1.98952 0.90599 0.86485 0.83215 0.82006 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.04 13.96 21.61 0.30 -53.74 14 2 C 0.02 1.28 5.49 84.83 0.47 1.74 14 3 Si 0.94 44.91 28.62 68.60 1.96 46.87 14 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 14 5 H -0.27 -12.23 7.11 99.48 0.71 -11.52 14 6 H -0.25 -11.57 7.11 99.48 0.71 -10.87 14 7 C -0.40 -22.60 9.95 67.92 0.68 -21.93 14 8 H 0.09 5.09 5.44 -2.91 -0.02 5.07 14 9 O -0.22 -11.47 7.79 -22.64 -0.18 -11.64 14 10 C 0.15 6.55 6.63 22.59 0.15 6.70 14 11 C -0.24 -9.73 9.17 22.39 0.21 -9.53 14 12 C -0.06 -1.70 10.04 22.25 0.22 -1.48 14 13 C -0.18 -4.72 10.04 22.30 0.22 -4.49 14 14 C -0.04 -1.23 9.75 22.26 0.22 -1.02 14 15 C -0.18 -6.68 6.22 22.42 0.14 -6.54 14 16 I -0.05 -1.73 39.63 -18.82 -0.75 -2.48 14 17 H 0.28 15.48 8.31 -92.71 -0.77 14.70 14 18 H 0.12 5.27 5.64 -2.91 -0.02 5.25 14 19 H 0.15 3.55 8.06 -2.91 -0.02 3.53 14 20 H 0.16 2.89 8.06 -2.92 -0.02 2.87 14 21 H 0.15 3.50 8.06 -2.92 -0.02 3.47 14 Total: -1.00 -61.64 222.18 4.89 -56.75 By element: Atomic # 1 Polarization: -0.46 SS G_CDS: 1.25 Total: 0.79 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 2.30 Total: -36.55 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.30 Total: -53.74 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.18 Total: -11.64 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.96 Total: 46.87 kcal Atomic # 53 Polarization: -1.73 SS G_CDS: -0.75 Total: -2.48 kcal Total: -61.64 4.89 -56.75 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035234324.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.081 kcal (2) G-P(sol) polarization free energy of solvation -61.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds