Wall clock time and date at job start Tue Mar 31 2020 06:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86806 * 119.99802 * 2 1 4 4 H 1.48499 * 109.47147 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47086 * 300.00246 * 3 2 1 6 6 H 1.48506 * 109.46901 * 59.99543 * 3 2 1 7 7 C 1.38646 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00711 * 180.02562 * 7 2 1 9 9 O 1.34838 * 119.99728 * 0.02562 * 7 2 1 10 10 C 1.35751 * 116.99901 * 185.05286 * 9 7 2 11 11 C 1.38904 * 120.06488 * 174.18833 * 10 9 7 12 12 C 1.38081 * 119.94328 * 179.72602 * 11 10 9 13 13 C 1.38312 * 120.07349 * 0.54778 * 12 11 10 14 14 C 1.38334 * 120.13342 * 359.72737 * 13 12 11 15 15 I 2.09503 * 119.97461 * 180.02562 * 14 13 12 16 16 C 1.38184 * 120.05618 * 359.97438 * 14 13 12 17 17 H 0.96998 * 120.00570 * 0.02562 * 1 2 3 18 18 H 1.07997 * 120.02823 * 359.97339 * 11 10 9 19 19 H 1.08000 * 119.96701 * 180.25649 * 12 11 10 20 20 H 1.08007 * 119.93511 * 179.74995 * 13 12 11 21 21 H 1.07999 * 120.03824 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 0.0006 5 1 1.8907 2.3965 -1.2124 6 1 1.8906 2.3965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5045 0.1076 11 6 1.4365 -4.7340 0.2357 12 6 2.1868 -5.8886 0.3387 13 6 3.5682 -5.8209 0.3259 14 6 4.2025 -4.5975 0.2042 15 53 6.2952 -4.5008 0.1846 16 6 3.4569 -3.4393 0.0946 17 1 -0.4851 0.8400 -0.0004 18 1 0.3579 -4.7872 0.2506 19 1 1.6946 -6.8451 0.4341 20 1 4.1529 -6.7250 0.4107 21 1 3.9523 -2.4844 -0.0008 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036803892.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:31 Heat of formation + Delta-G solvation = 6.944815 kcal Electronic energy + Delta-G solvation = -9895.003607 eV Core-core repulsion = 7788.931326 eV Total energy + Delta-G solvation = -2106.072281 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 289.954 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.15746 -36.61882 -32.46267 -31.56555 -29.12109 -27.38154 -25.37364 -21.75389 -21.08949 -18.06307 -16.99134 -15.22191 -14.62939 -14.41661 -13.78408 -13.48018 -12.70332 -12.42359 -11.77826 -11.73304 -11.07037 -10.98913 -10.58878 -10.47214 -9.80260 -9.53403 -9.38908 -8.92501 -8.25609 -7.42815 -6.53736 -4.13583 1.61651 1.84131 2.15228 3.08484 3.10817 3.16406 3.90369 4.36219 4.98696 5.13403 5.49135 5.73745 5.92702 6.07909 6.42381 6.54636 6.85675 6.99371 7.04988 7.25791 7.56121 7.89605 8.91533 9.56978 10.63640 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.027649 B = 0.007056 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.467750 B = 3967.202226 C = 4967.742963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.042 3.958 3 Si 0.940 3.060 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.395 4.395 8 H 0.093 0.907 9 O -0.171 6.171 10 C 0.155 3.845 11 C -0.176 4.176 12 C -0.073 4.073 13 C -0.183 4.183 14 C -0.041 4.041 15 I -0.078 7.078 16 C -0.202 4.202 17 H 0.271 0.729 18 H 0.123 0.877 19 H 0.120 0.880 20 H 0.113 0.887 21 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.416 -8.852 0.559 14.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.163 4.163 3 Si 0.764 3.236 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.471 4.471 8 H 0.110 0.890 9 O -0.074 6.074 10 C 0.099 3.901 11 C -0.195 4.195 12 C -0.094 4.094 13 C -0.205 4.205 14 C -0.182 4.182 15 I 0.072 6.928 16 C -0.224 4.224 17 H 0.081 0.919 18 H 0.141 0.859 19 H 0.138 0.862 20 H 0.131 0.869 21 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.445 -8.546 0.521 15.106 hybrid contribution -0.732 0.773 0.006 1.065 sum 11.713 -7.773 0.527 14.067 Atomic orbital electron populations 1.70036 1.05991 1.27806 1.45458 1.25295 0.95853 0.98886 0.96241 0.85656 0.79324 0.80205 0.78388 1.18887 1.19994 1.19991 1.21384 0.91843 0.80676 1.53162 0.88957 1.84001 1.34053 1.11411 1.77896 1.19314 0.89615 0.88426 0.92786 1.20375 1.00022 0.90274 1.08851 1.20675 0.92987 0.97160 0.98529 1.20506 0.94557 0.95487 1.09971 1.23706 0.92733 0.95940 1.05818 1.96557 0.97900 1.99516 1.98832 1.21087 0.93802 0.97872 1.09655 0.91893 0.85910 0.86157 0.86896 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.68 13.67 55.48 0.76 -23.92 14 2 C 0.04 1.14 5.49 -17.52 -0.10 1.05 14 3 Si 0.94 20.27 29.55 -169.99 -5.02 15.25 14 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 14 5 H -0.27 -5.79 7.11 56.52 0.40 -5.39 14 6 H -0.27 -5.80 7.11 56.52 0.40 -5.39 14 7 C -0.39 -10.83 9.49 30.88 0.29 -10.53 14 8 H 0.09 2.37 5.20 -52.49 -0.27 2.10 14 9 O -0.17 -4.74 9.76 0.02 0.00 -4.74 14 10 C 0.15 3.63 6.65 -39.11 -0.26 3.37 14 11 C -0.18 -3.53 9.99 -39.39 -0.39 -3.93 14 12 C -0.07 -1.25 10.04 -39.61 -0.40 -1.64 14 13 C -0.18 -3.13 9.76 -39.52 -0.39 -3.51 14 14 C -0.04 -0.77 6.20 -39.57 -0.25 -1.01 14 15 I -0.08 -1.19 40.26 -73.02 -2.94 -4.13 14 16 C -0.20 -4.35 8.88 -39.38 -0.35 -4.70 14 17 H 0.27 7.12 8.31 -40.82 -0.34 6.78 14 18 H 0.12 2.34 8.06 -52.49 -0.42 1.91 14 19 H 0.12 1.62 8.06 -52.49 -0.42 1.20 14 20 H 0.11 1.66 8.06 -52.48 -0.42 1.24 14 21 H 0.13 2.96 5.64 -52.49 -0.30 2.67 14 LS Contribution 224.38 15.07 3.38 3.38 Total: -1.00 -28.43 224.38 -6.63 -35.06 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -0.97 Total: 0.01 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -1.83 Total: -20.92 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.76 Total: -23.92 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: 0.00 Total: -4.74 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 53 Polarization: -1.19 SS G_CDS: -2.94 Total: -4.13 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -28.43 -6.63 -35.06 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036803892.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.005 kcal (2) G-P(sol) polarization free energy of solvation -28.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds