Wall clock time and date at job start Tue Mar 31 2020 06:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86806 * 119.99802 * 2 1 4 4 H 1.48499 * 109.47147 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47086 * 300.00246 * 3 2 1 6 6 H 1.48506 * 109.46901 * 59.99543 * 3 2 1 7 7 C 1.38646 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00711 * 180.02562 * 7 2 1 9 9 O 1.34838 * 119.99728 * 0.02562 * 7 2 1 10 10 C 1.35751 * 116.99901 * 185.05286 * 9 7 2 11 11 C 1.38904 * 120.06488 * 174.18833 * 10 9 7 12 12 C 1.38081 * 119.94328 * 179.72602 * 11 10 9 13 13 C 1.38312 * 120.07349 * 0.54778 * 12 11 10 14 14 C 1.38334 * 120.13342 * 359.72737 * 13 12 11 15 15 I 2.09503 * 119.97461 * 180.02562 * 14 13 12 16 16 C 1.38184 * 120.05618 * 359.97438 * 14 13 12 17 17 H 0.96998 * 120.00570 * 0.02562 * 1 2 3 18 18 H 1.07997 * 120.02823 * 359.97339 * 11 10 9 19 19 H 1.08000 * 119.96701 * 180.25649 * 12 11 10 20 20 H 1.08007 * 119.93511 * 179.74995 * 13 12 11 21 21 H 1.07999 * 120.03824 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 0.0006 5 1 1.8907 2.3965 -1.2124 6 1 1.8906 2.3965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5045 0.1076 11 6 1.4365 -4.7340 0.2357 12 6 2.1868 -5.8886 0.3387 13 6 3.5682 -5.8209 0.3259 14 6 4.2025 -4.5975 0.2042 15 53 6.2952 -4.5008 0.1846 16 6 3.4569 -3.4393 0.0946 17 1 -0.4851 0.8400 -0.0004 18 1 0.3579 -4.7872 0.2506 19 1 1.6946 -6.8451 0.4341 20 1 4.1529 -6.7250 0.4107 21 1 3.9523 -2.4844 -0.0008 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036803892.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:30 Heat of formation + Delta-G solvation = -9.774101 kcal Electronic energy + Delta-G solvation = -9895.728593 eV Core-core repulsion = 7788.931326 eV Total energy + Delta-G solvation = -2106.797268 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 289.954 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.84933 -38.32233 -34.38566 -33.09968 -30.75302 -28.92129 -27.28845 -23.37935 -22.70013 -19.90003 -18.77890 -16.85810 -16.35006 -16.11151 -15.62030 -14.98794 -14.48459 -13.96537 -13.59371 -13.35678 -12.72555 -12.52239 -12.23623 -12.11645 -11.23990 -11.18202 -10.84370 -10.80306 -9.75146 -9.13252 -8.50661 -6.19535 0.15689 0.28309 0.58703 1.34413 1.41462 1.51977 2.14990 2.72283 3.07486 3.43098 4.04303 4.21033 4.36859 4.53333 4.89431 4.98817 5.06408 5.36415 5.50647 5.55538 5.96514 6.01111 6.94048 7.70379 8.71949 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.027649 B = 0.007056 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.467750 B = 3967.202226 C = 4967.742963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.017 4.017 3 Si 1.012 2.988 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.414 4.414 8 H 0.098 0.902 9 O -0.224 6.224 10 C 0.117 3.883 11 C -0.183 4.183 12 C -0.060 4.060 13 C -0.161 4.161 14 C -0.058 4.058 15 I -0.036 7.036 16 C -0.211 4.211 17 H 0.274 0.726 18 H 0.126 0.874 19 H 0.168 0.832 20 H 0.149 0.851 21 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.458 -10.578 0.777 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.215 4.215 3 Si 0.832 3.168 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.490 4.490 8 H 0.116 0.884 9 O -0.130 6.130 10 C 0.065 3.935 11 C -0.203 4.203 12 C -0.079 4.079 13 C -0.182 4.182 14 C -0.198 4.198 15 I 0.114 6.886 16 C -0.232 4.232 17 H 0.083 0.917 18 H 0.144 0.856 19 H 0.185 0.815 20 H 0.167 0.833 21 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.514 -10.329 0.742 17.830 hybrid contribution -1.191 0.943 -0.040 1.520 sum 13.323 -9.386 0.702 16.312 Atomic orbital electron populations 1.70163 1.07880 1.28861 1.48395 1.26499 0.96806 1.02515 0.95683 0.84615 0.78313 0.75140 0.78756 1.17642 1.19142 1.19173 1.21780 0.92323 0.81406 1.53516 0.88446 1.83965 1.35510 1.12441 1.81080 1.19892 0.90810 0.88488 0.94342 1.20708 1.00762 0.90266 1.08514 1.21197 0.93037 0.97789 0.95902 1.21058 0.94975 0.96071 1.06086 1.24105 0.95335 0.95493 1.04915 1.96565 0.93725 1.99561 1.98786 1.21043 0.93325 0.98563 1.10305 0.91689 0.85596 0.81468 0.83329 0.86247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.20 13.67 21.61 0.30 -54.91 14 2 C -0.02 -0.94 5.49 84.83 0.47 -0.47 14 3 Si 1.01 42.54 29.55 68.60 2.03 44.57 14 4 H -0.25 -9.95 7.11 99.48 0.71 -9.24 14 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 14 6 H -0.27 -10.74 7.11 99.48 0.71 -10.03 14 7 C -0.41 -23.80 9.49 67.92 0.64 -23.16 14 8 H 0.10 5.23 5.20 -2.91 -0.02 5.21 14 9 O -0.22 -13.11 9.76 -22.83 -0.22 -13.33 14 10 C 0.12 5.63 6.65 22.57 0.15 5.78 14 11 C -0.18 -7.24 9.99 22.39 0.22 -7.01 14 12 C -0.06 -1.81 10.04 22.25 0.22 -1.59 14 13 C -0.16 -4.83 9.76 22.31 0.22 -4.61 14 14 C -0.06 -2.03 6.20 22.28 0.14 -1.90 14 15 I -0.04 -0.99 40.26 -18.82 -0.76 -1.75 14 16 C -0.21 -9.08 8.88 22.40 0.20 -8.88 14 17 H 0.27 15.09 8.31 -92.71 -0.77 14.31 14 18 H 0.13 4.80 8.06 -2.91 -0.02 4.78 14 19 H 0.17 3.54 8.06 -2.91 -0.02 3.52 14 20 H 0.15 3.50 8.06 -2.91 -0.02 3.48 14 21 H 0.12 5.41 5.64 -2.91 -0.02 5.39 14 Total: -1.00 -64.70 224.38 4.85 -59.85 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 1.25 Total: 7.42 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 2.26 Total: -41.85 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.30 Total: -54.91 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.22 Total: -13.33 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 53 Polarization: -0.99 SS G_CDS: -0.76 Total: -1.75 kcal Total: -64.70 4.85 -59.85 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036803892.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.074 kcal (2) G-P(sol) polarization free energy of solvation -64.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds