Wall clock time and date at job start Tue Mar 31 2020 06:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47023 * 269.99745 * 3 2 1 5 5 H 1.48496 * 109.47251 * 30.00188 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.46946 * 180.02562 * 11 10 9 13 13 C 1.76192 * 102.99967 * 180.02562 * 12 11 10 14 14 C 1.38929 * 120.07997 * 359.72325 * 13 12 11 15 15 C 1.38204 * 119.92460 * 179.77185 * 14 13 12 16 16 Cl 1.73601 * 119.96829 * 180.27360 * 15 14 13 17 17 C 1.38428 * 120.07179 * 0.50708 * 15 14 13 18 18 C 1.38274 * 120.14977 * 359.74400 * 17 15 14 19 19 C 1.38186 * 120.08457 * 0.02562 * 18 17 15 20 20 Cl 1.73599 * 120.04160 * 179.97438 * 19 18 17 21 21 H 0.96996 * 119.99309 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 23 23 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 24 24 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 25 25 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 26 26 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 27 27 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 28 28 H 1.08006 * 120.03719 * 0.02562 * 14 13 12 29 29 H 1.07999 * 119.92406 * 179.72692 * 17 15 14 30 30 H 1.08003 * 119.95439 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0014 11 6 5.5516 -2.6366 0.0001 12 16 6.1562 -4.3469 0.0010 13 6 7.9069 -4.1483 0.0002 14 6 8.4633 -2.8753 -0.0066 15 6 9.8370 -2.7232 -0.0025 16 17 10.5334 -1.1331 -0.0039 17 6 10.6582 -3.8376 -0.0021 18 6 10.1077 -5.1060 -0.0005 19 6 8.7351 -5.2654 0.0002 20 17 8.0451 -6.8584 0.0015 21 1 -0.4849 0.8401 -0.0004 22 1 3.8752 -0.6797 0.8895 23 1 3.8746 -0.6808 -0.8905 24 1 3.6579 -3.1513 -0.8880 25 1 3.6586 -3.1495 0.8919 26 1 5.9142 -2.1238 -0.8908 27 1 5.9156 -2.1217 0.8892 28 1 7.8231 -2.0055 -0.0111 29 1 11.7313 -3.7160 -0.0033 30 1 10.7514 -5.9733 -0.0006 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042227319.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:47 Heat of formation + Delta-G solvation = -9.423541 kcal Electronic energy + Delta-G solvation = -15321.220572 eV Core-core repulsion = 12486.611790 eV Total energy + Delta-G solvation = -2834.608783 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.56040 -37.04124 -36.45561 -34.76220 -32.25727 -31.67204 -30.73982 -28.17843 -23.84680 -23.54035 -22.56263 -20.35595 -18.27916 -16.89288 -16.63668 -16.18116 -15.48701 -15.02432 -14.53897 -14.29764 -14.26285 -13.93608 -12.78594 -12.75489 -12.50841 -12.30876 -12.23714 -12.19410 -11.50722 -11.31260 -11.26473 -11.11430 -10.95055 -10.29886 -10.13436 -9.98862 -9.83459 -9.69886 -9.28529 -9.03798 -8.59757 -7.55137 -6.09713 -4.08923 0.55724 0.71384 1.32243 1.66352 1.91774 2.45434 3.02337 3.26414 3.34429 3.36226 4.29362 4.39620 4.60270 4.81004 4.87817 5.14999 5.24400 5.24816 5.27003 5.39332 5.65653 5.71550 5.80854 6.10025 6.25382 6.34829 6.69243 7.14327 7.27234 7.70204 8.46536 8.94621 9.51689 11.03590 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.017109 B = 0.004014 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.137533 B = 6974.352797 C = 8584.740412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.006 4.006 10 C -0.087 4.087 11 C -0.114 4.114 12 S -0.076 6.076 13 C -0.065 4.065 14 C -0.119 4.119 15 C -0.010 4.010 16 Cl -0.060 7.060 17 C -0.115 4.115 18 C -0.079 4.079 19 C -0.027 4.027 20 Cl -0.046 7.046 21 H 0.264 0.736 22 H 0.018 0.982 23 H 0.014 0.986 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.146 0.854 29 H 0.143 0.857 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.829 -9.046 0.012 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.046 4.046 10 C -0.127 4.127 11 C -0.262 4.262 12 S 0.174 5.826 13 C -0.179 4.179 14 C -0.145 4.145 15 C -0.039 4.039 16 Cl -0.031 7.031 17 C -0.137 4.137 18 C -0.100 4.100 19 C -0.061 4.061 20 Cl -0.017 7.017 21 H 0.074 0.926 22 H 0.037 0.963 23 H 0.032 0.968 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.164 0.836 29 H 0.161 0.839 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 22.845 -9.931 0.016 24.910 hybrid contribution 1.170 2.142 -0.022 2.441 sum 24.015 -7.789 -0.006 25.246 Atomic orbital electron populations 1.69911 1.06298 1.26979 1.50771 1.25016 0.94736 0.99147 0.94455 0.86789 0.80344 0.83659 0.78558 1.20219 1.21277 1.19041 1.21077 0.89149 0.94651 1.51260 0.90849 1.19569 0.97433 0.91013 0.96558 1.21297 0.87522 1.01110 1.02729 1.24151 1.02994 0.93744 1.05355 1.86002 0.93169 1.13819 1.89636 1.21866 0.99525 0.94032 1.02522 1.21133 0.93869 0.96545 1.02913 1.20871 0.92939 0.86875 1.03166 1.98394 1.84330 1.23686 1.96729 1.20968 1.00345 0.90227 1.02204 1.20925 0.92361 0.97813 0.98855 1.20477 0.92799 0.86035 1.06754 1.98390 1.84632 1.22066 1.96604 0.92630 0.96345 0.96777 0.91470 0.91435 0.89477 0.89466 0.83641 0.83940 0.83679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.52 -14.61 9.66 -34.44 -0.33 -14.95 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.01 -0.15 4.04 -27.88 -0.11 -0.26 16 10 C -0.09 -1.63 5.16 -26.73 -0.14 -1.77 16 11 C -0.11 -1.72 4.33 37.16 0.16 -1.55 16 12 S -0.08 -1.07 20.83 -107.50 -2.24 -3.31 16 13 C -0.06 -0.81 6.11 -39.02 -0.24 -1.05 16 14 C -0.12 -1.41 9.14 -39.34 -0.36 -1.77 16 15 C -0.01 -0.10 6.32 -39.52 -0.25 -0.35 16 16 Cl -0.06 -0.60 28.95 -51.86 -1.50 -2.10 16 17 C -0.12 -1.00 9.83 -39.50 -0.39 -1.38 16 18 C -0.08 -0.70 9.82 -39.59 -0.39 -1.09 16 19 C -0.03 -0.30 6.34 -39.30 -0.25 -0.55 16 20 Cl -0.05 -0.51 27.83 -51.86 -1.44 -1.96 16 21 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 22 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 23 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 24 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.09 1.23 7.74 -51.92 -0.40 0.83 16 27 H 0.09 1.24 7.76 -51.92 -0.40 0.83 16 28 H 0.15 1.70 5.88 -52.48 -0.31 1.39 16 29 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 300.86 15.07 4.53 4.53 Total: -1.00 -29.53 300.86 -10.10 -39.62 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: -3.16 Total: -3.80 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -2.39 Total: -22.87 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.77 Total: -26.73 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 16 Polarization: -1.07 SS G_CDS: -2.24 Total: -3.31 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -2.94 Total: -4.06 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.53 -10.10 -39.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042227319.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.200 kcal (2) G-P(sol) polarization free energy of solvation -29.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds