Wall clock time and date at job start Tue Mar 31 2020 06:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47023 * 269.99745 * 3 2 1 5 5 H 1.48496 * 109.47251 * 30.00188 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.46946 * 180.02562 * 11 10 9 13 13 C 1.76192 * 102.99967 * 180.02562 * 12 11 10 14 14 C 1.38929 * 120.07997 * 359.72325 * 13 12 11 15 15 C 1.38204 * 119.92460 * 179.77185 * 14 13 12 16 16 Cl 1.73601 * 119.96829 * 180.27360 * 15 14 13 17 17 C 1.38428 * 120.07179 * 0.50708 * 15 14 13 18 18 C 1.38274 * 120.14977 * 359.74400 * 17 15 14 19 19 C 1.38186 * 120.08457 * 0.02562 * 18 17 15 20 20 Cl 1.73599 * 120.04160 * 179.97438 * 19 18 17 21 21 H 0.96996 * 119.99309 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 23 23 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 24 24 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 25 25 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 26 26 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 27 27 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 28 28 H 1.08006 * 120.03719 * 0.02562 * 14 13 12 29 29 H 1.07999 * 119.92406 * 179.72692 * 17 15 14 30 30 H 1.08003 * 119.95439 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0014 11 6 5.5516 -2.6366 0.0001 12 16 6.1562 -4.3469 0.0010 13 6 7.9069 -4.1483 0.0002 14 6 8.4633 -2.8753 -0.0066 15 6 9.8370 -2.7232 -0.0025 16 17 10.5334 -1.1331 -0.0039 17 6 10.6582 -3.8376 -0.0021 18 6 10.1077 -5.1060 -0.0005 19 6 8.7351 -5.2654 0.0002 20 17 8.0451 -6.8584 0.0015 21 1 -0.4849 0.8401 -0.0004 22 1 3.8752 -0.6797 0.8895 23 1 3.8746 -0.6808 -0.8905 24 1 3.6579 -3.1513 -0.8880 25 1 3.6586 -3.1495 0.8919 26 1 5.9142 -2.1238 -0.8908 27 1 5.9156 -2.1217 0.8892 28 1 7.8231 -2.0055 -0.0111 29 1 11.7313 -3.7160 -0.0033 30 1 10.7514 -5.9733 -0.0006 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042227319.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:47 Heat of formation + Delta-G solvation = -23.901444 kcal Electronic energy + Delta-G solvation = -15321.848381 eV Core-core repulsion = 12486.611790 eV Total energy + Delta-G solvation = -2835.236592 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.35354 -37.84333 -37.26275 -36.46483 -34.22467 -32.54125 -31.54761 -29.93511 -25.38718 -24.33788 -23.66212 -22.01016 -19.27054 -18.80089 -17.60206 -17.03376 -16.55543 -16.38431 -16.19260 -15.23939 -15.15102 -15.14695 -14.60205 -13.91490 -13.83694 -13.53224 -13.40683 -13.16391 -12.90255 -12.74459 -12.15323 -12.12880 -12.07431 -11.83454 -11.63592 -11.59572 -11.38022 -11.12580 -10.89564 -10.77182 -9.84325 -8.58182 -8.29812 -6.34959 -0.25116 -0.07176 0.29580 0.87064 1.02466 1.36842 1.38759 1.44391 1.50166 2.24362 2.35996 3.05750 3.53263 3.84660 3.92397 3.96519 4.02558 4.10142 4.43605 4.54404 4.59763 4.69475 4.76780 4.91694 4.96986 5.00363 5.37931 5.40697 5.49659 5.63250 6.26190 6.73160 7.29725 8.87138 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.017109 B = 0.004014 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.137533 B = 6974.352797 C = 8584.740412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.242 1.242 7 C -0.536 4.536 8 H 0.030 0.970 9 C -0.004 4.004 10 C -0.080 4.080 11 C -0.103 4.103 12 S -0.099 6.099 13 C -0.079 4.079 14 C -0.128 4.128 15 C -0.017 4.017 16 Cl -0.057 7.057 17 C -0.101 4.101 18 C -0.071 4.071 19 C -0.036 4.036 20 Cl -0.051 7.051 21 H 0.267 0.733 22 H 0.027 0.973 23 H 0.025 0.975 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.143 0.857 29 H 0.174 0.826 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.463 -8.426 0.005 28.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.165 1.165 7 C -0.574 4.574 8 H 0.049 0.951 9 C -0.044 4.044 10 C -0.119 4.119 11 C -0.251 4.251 12 S 0.149 5.851 13 C -0.194 4.194 14 C -0.153 4.153 15 C -0.046 4.046 16 Cl -0.027 7.027 17 C -0.123 4.123 18 C -0.091 4.091 19 C -0.070 4.070 20 Cl -0.021 7.021 21 H 0.075 0.925 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.161 0.839 29 H 0.191 0.809 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 26.509 -9.324 0.009 28.101 hybrid contribution 0.096 1.836 -0.022 1.838 sum 26.604 -7.489 -0.013 27.638 Atomic orbital electron populations 1.70077 1.08440 1.28233 1.52525 1.26044 0.95615 1.03651 0.93998 0.85638 0.79630 0.77982 0.79295 1.19065 1.21135 1.16513 1.21471 0.92116 0.93159 1.50667 0.95113 1.19499 0.93859 0.93815 0.97195 1.21042 0.90491 0.98442 1.01889 1.23865 0.99951 0.94884 1.06433 1.85997 0.95591 1.12795 1.90719 1.21768 0.97980 0.94976 1.04627 1.21161 0.94684 0.96129 1.03368 1.21004 0.92665 0.87659 1.03261 1.98399 1.84083 1.23560 1.96705 1.21361 1.01740 0.89382 0.99785 1.21291 0.91531 0.99069 0.97223 1.20706 0.93721 0.85520 1.07021 1.98391 1.84878 1.22229 1.96647 0.92465 0.95504 0.95619 0.92404 0.92405 0.88373 0.88435 0.83913 0.80873 0.80654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 2 C 0.00 0.21 5.47 84.65 0.46 0.68 16 3 Si 0.95 43.41 27.47 68.60 1.88 45.29 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 7 C -0.54 -30.72 9.66 25.60 0.25 -30.47 16 8 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 9 C 0.00 -0.20 4.04 29.85 0.12 -0.08 16 10 C -0.08 -2.99 5.16 30.59 0.16 -2.83 16 11 C -0.10 -2.99 4.33 71.98 0.31 -2.68 16 12 S -0.10 -2.74 20.83 -56.49 -1.18 -3.91 16 13 C -0.08 -1.87 6.11 22.63 0.14 -1.73 16 14 C -0.13 -2.78 9.14 22.43 0.21 -2.58 16 15 C -0.02 -0.31 6.32 22.31 0.14 -0.17 16 16 Cl -0.06 -0.98 28.95 -2.72 -0.08 -1.06 16 17 C -0.10 -1.37 9.83 22.32 0.22 -1.15 16 18 C -0.07 -1.01 9.82 22.27 0.22 -0.79 16 19 C -0.04 -0.74 6.34 22.45 0.14 -0.59 16 20 Cl -0.05 -1.06 27.83 -2.72 -0.08 -1.13 16 21 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 22 H 0.03 1.16 7.20 -2.39 -0.02 1.14 16 23 H 0.03 1.09 7.57 -2.39 -0.02 1.08 16 24 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.10 2.61 7.74 -2.39 -0.02 2.59 16 27 H 0.10 2.61 7.76 -2.39 -0.02 2.59 16 28 H 0.14 3.09 5.88 -2.91 -0.02 3.07 16 29 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 30 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -65.21 300.86 4.31 -60.89 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: 1.10 Total: 1.87 kcal Atomic # 6 Polarization: -44.76 SS G_CDS: 2.37 Total: -42.40 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.30 Total: -59.55 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.29 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -1.18 Total: -3.91 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.15 Total: -2.19 kcal Total: -65.21 4.31 -60.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042227319.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.990 kcal (2) G-P(sol) polarization free energy of solvation -65.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds