Wall clock time and date at job start Tue Mar 31 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47043 * 2 1 4 4 N 1.46895 * 109.47430 * 119.99721 * 2 1 3 5 5 C 1.46899 * 111.00292 * 170.67883 * 4 2 1 6 6 C 1.50700 * 109.47171 * 293.95521 * 5 4 2 7 7 H 1.07999 * 119.99468 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00085 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99835 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00002 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46832 * 60.00395 * 10 8 6 12 12 H 1.48494 * 109.47190 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47150 * 300.00769 * 10 8 6 14 14 C 1.46901 * 111.00165 * 294.63643 * 4 2 1 15 15 C 1.50696 * 109.47305 * 163.79274 * 14 4 2 16 16 C 1.38233 * 120.00273 * 275.48826 * 15 14 4 17 17 C 1.38231 * 120.00190 * 179.76281 * 16 15 14 18 18 C 1.38235 * 119.99965 * 0.51261 * 17 16 15 19 19 C 1.50701 * 120.00295 * 179.72448 * 18 17 16 20 20 C 1.53005 * 109.47149 * 240.02206 * 19 18 17 21 21 C 1.53004 * 109.46880 * 0.02562 * 19 18 17 22 22 C 1.52995 * 109.47657 * 120.02057 * 19 18 17 23 23 C 1.38236 * 120.00154 * 359.74009 * 18 17 16 24 24 C 1.38235 * 119.99722 * 0.02562 * 23 18 17 25 25 H 1.09005 * 109.46846 * 306.29936 * 1 2 3 26 26 H 1.08998 * 109.46956 * 66.30108 * 1 2 3 27 27 H 1.08998 * 109.47068 * 186.30000 * 1 2 3 28 28 H 1.09005 * 109.47183 * 240.00165 * 2 1 3 29 29 H 1.08997 * 109.47379 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46993 * 299.99898 * 3 2 1 31 31 H 1.09002 * 109.47718 * 59.99936 * 3 2 1 32 32 H 1.09001 * 109.46727 * 53.95277 * 5 4 2 33 33 H 1.08996 * 109.47221 * 173.95444 * 5 4 2 34 34 H 0.97003 * 120.00041 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47107 * 283.79437 * 14 4 2 36 36 H 1.08994 * 109.47231 * 43.79142 * 14 4 2 37 37 H 1.08001 * 119.99849 * 0.02562 * 16 15 14 38 38 H 1.07998 * 120.00410 * 180.23306 * 17 16 15 39 39 H 1.09004 * 109.46919 * 59.99464 * 20 19 18 40 40 H 1.08998 * 109.47442 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.46870 * 299.99783 * 20 19 18 42 42 H 1.08996 * 109.47024 * 59.99937 * 21 19 18 43 43 H 1.08998 * 109.46929 * 180.02562 * 21 19 18 44 44 H 1.09006 * 109.46830 * 299.99826 * 21 19 18 45 45 H 1.09002 * 109.47036 * 59.99805 * 22 19 18 46 46 H 1.09001 * 109.47336 * 180.02562 * 22 19 18 47 47 H 1.09003 * 109.46643 * 299.99973 * 22 19 18 48 48 H 1.07994 * 120.00409 * 179.97438 * 23 18 17 49 49 H 1.08001 * 120.00111 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 3.4712 -0.9074 1.1275 6 6 3.7820 -1.8667 0.0077 7 1 2.9814 -2.2755 -0.5910 8 6 5.0885 -2.2218 -0.2532 9 7 6.0633 -1.7236 0.4755 10 14 5.4738 -3.4115 -1.6408 11 1 4.9924 -2.8451 -2.9264 12 1 6.9409 -3.6288 -1.7136 13 1 4.7940 -4.7068 -1.3853 14 6 1.6563 0.0438 2.4176 15 6 1.8090 -0.8590 3.6145 16 6 0.7822 -1.7128 3.9718 17 6 0.9241 -2.5444 5.0668 18 6 2.0888 -2.5147 5.8109 19 6 2.2411 -3.4169 7.0083 20 6 2.4623 -2.5678 8.2618 21 6 0.9738 -4.2571 7.1784 22 6 3.4420 -4.3419 6.8006 23 6 3.1136 -1.6572 5.4567 24 6 2.9735 -0.8291 4.3588 25 1 -0.3633 0.6084 0.8283 26 1 -0.3633 0.4130 -0.9410 27 1 -0.3633 -1.0214 0.1128 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.9704 0.0434 0.9405 33 1 3.8240 -1.3237 2.0710 34 1 6.9825 -1.9737 0.2923 35 1 2.3109 0.9082 2.5286 36 1 0.6216 0.3786 2.3447 37 1 -0.1293 -1.7331 3.3928 38 1 0.1234 -3.2142 5.3437 39 1 1.6067 -1.9088 8.4098 40 1 2.5720 -3.2202 9.1280 41 1 3.3652 -1.9693 8.1405 42 1 0.8163 -4.8619 6.2854 43 1 1.0838 -4.9093 8.0448 44 1 0.1182 -3.5981 7.3265 45 1 4.3449 -3.7434 6.6794 46 1 3.5519 -4.9947 7.6666 47 1 3.2844 -4.9468 5.9077 48 1 4.0233 -1.6337 6.0383 49 1 3.7739 -0.1588 4.0824 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530720.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:50 Heat of formation + Delta-G solvation = 5.892849 kcal Electronic energy + Delta-G solvation = -23850.183791 eV Core-core repulsion = 20776.261032 eV Total energy + Delta-G solvation = -3073.922760 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.64513 -37.84639 -35.95027 -32.73956 -31.55427 -30.67424 -29.60461 -27.29964 -27.18305 -26.99360 -26.53235 -24.48930 -22.29609 -21.72159 -21.46756 -18.99488 -18.61929 -16.31834 -16.15845 -15.33210 -14.97037 -14.60217 -14.42292 -14.18772 -14.04696 -13.67282 -13.33121 -13.13696 -13.03220 -12.94249 -12.49470 -12.39516 -12.03871 -11.91949 -11.79978 -11.64684 -11.41049 -11.36309 -11.16760 -11.05908 -10.91654 -10.80899 -10.68424 -10.58883 -10.41941 -10.26925 -10.17861 -9.98297 -9.67755 -9.10783 -8.42498 -8.32683 -8.02584 -7.12415 -5.97332 -3.97132 1.83221 1.92814 3.35806 3.39785 3.42988 4.18503 4.47916 4.73409 4.85575 5.04454 5.12011 5.35523 5.38392 5.40030 5.46044 5.51488 5.56707 5.59079 5.65200 5.77530 5.79419 5.82889 5.89245 5.90522 5.92395 6.03823 6.06424 6.07625 6.09492 6.10817 6.19009 6.29983 6.34449 6.36356 6.38981 6.50990 6.56599 6.58428 6.80770 6.91809 6.94367 7.04158 7.20690 7.41947 7.47722 7.51975 7.86201 8.18929 8.30538 8.62910 9.09730 9.66012 11.13508 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.004950 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.460742 B = 5654.858995 C = 6951.614969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.081 3.919 3 C -0.181 4.181 4 N -0.523 5.523 5 C 0.189 3.811 6 C -0.503 4.503 7 H 0.060 0.940 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.087 3.913 15 C -0.061 4.061 16 C -0.099 4.099 17 C -0.127 4.127 18 C -0.081 4.081 19 C -0.027 4.027 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.139 4.139 23 C -0.116 4.116 24 C -0.101 4.101 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.045 0.955 32 H -0.007 1.007 33 H 0.037 0.963 34 H 0.260 0.740 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.113 0.887 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.752 0.717 11.712 15.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.028 4.028 3 C -0.240 4.240 4 N -0.247 5.247 5 C 0.064 3.936 6 C -0.542 4.542 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.040 4.040 15 C -0.062 4.062 16 C -0.117 4.117 17 C -0.145 4.145 18 C -0.082 4.082 19 C -0.027 4.027 20 C -0.194 4.194 21 C -0.199 4.199 22 C -0.196 4.196 23 C -0.134 4.134 24 C -0.119 4.119 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.010 0.990 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.131 0.869 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.774 0.250 11.742 15.279 hybrid contribution 0.906 0.132 -0.898 1.283 sum -8.868 0.382 10.843 14.013 Atomic orbital electron populations 1.21885 0.96258 1.01643 1.00124 1.21594 0.93572 0.91986 0.95657 1.22441 1.02515 0.98586 1.00449 1.62374 1.18597 1.44899 0.98814 1.19804 0.80291 0.95429 0.98079 1.21121 0.91922 1.26016 1.15136 0.92145 1.24943 0.96331 0.96533 0.96658 1.69944 0.99582 1.44524 1.39804 0.86632 0.76964 0.81699 0.82536 1.20349 1.21434 1.20258 1.21033 1.00005 0.93423 0.89574 1.19812 0.93722 0.97310 0.95306 1.20891 0.98884 0.95709 0.96265 1.21019 0.97530 0.99829 0.96131 1.19630 0.94516 0.97392 0.96632 1.19443 0.96028 0.94236 0.93002 1.21876 1.01857 0.99421 0.96207 1.21943 0.96939 0.99448 1.01559 1.21890 0.97195 0.98999 1.01513 1.20824 0.98200 0.96747 0.97625 1.21056 0.96889 0.99276 0.94728 0.93635 0.93333 0.92224 0.88978 0.91869 0.93383 0.93604 0.98952 0.94548 0.93031 0.95005 0.91213 0.86601 0.86397 0.92693 0.92773 0.92458 0.92208 0.92812 0.92448 0.92343 0.92825 0.92310 0.86851 0.86463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.99 37.16 0.33 -1.85 16 2 C 0.08 1.54 2.78 -67.71 -0.19 1.35 16 3 C -0.18 -3.18 8.51 37.16 0.32 -2.86 16 4 N -0.52 -11.10 4.39 -229.53 -1.01 -12.11 16 5 C 0.19 4.86 4.43 -4.98 -0.02 4.84 16 6 C -0.50 -14.16 8.38 -34.44 -0.29 -14.44 16 7 H 0.06 1.69 7.17 -52.49 -0.38 1.32 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 10 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 14 C 0.09 1.60 3.86 -4.98 -0.02 1.58 16 15 C -0.06 -1.10 4.93 -104.62 -0.52 -1.62 16 16 C -0.10 -1.63 9.72 -39.59 -0.38 -2.01 16 17 C -0.13 -1.90 8.98 -39.59 -0.36 -2.26 16 18 C -0.08 -1.20 4.76 -104.62 -0.50 -1.70 16 19 C -0.03 -0.32 0.85 -155.66 -0.13 -0.45 16 20 C -0.14 -1.42 8.29 37.16 0.31 -1.11 16 21 C -0.14 -1.47 7.13 37.16 0.27 -1.20 16 22 C -0.14 -1.66 8.29 37.16 0.31 -1.36 16 23 C -0.12 -1.87 8.71 -39.58 -0.34 -2.22 16 24 C -0.10 -1.82 8.29 -39.58 -0.33 -2.15 16 25 H 0.04 0.64 6.53 -51.93 -0.34 0.30 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.09 1.97 6.66 -51.93 -0.35 1.63 16 29 H 0.06 1.27 6.55 -51.93 -0.34 0.93 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.74 6.70 -51.93 -0.35 0.39 16 32 H -0.01 -0.20 6.37 -51.93 -0.33 -0.53 16 33 H 0.04 1.01 6.17 -51.93 -0.32 0.69 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 35 H 0.03 0.59 7.05 -51.93 -0.37 0.23 16 36 H 0.07 1.13 5.99 -51.93 -0.31 0.82 16 37 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.12 1.50 5.90 -52.49 -0.31 1.19 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.60 7.39 -51.93 -0.38 0.22 16 42 H 0.06 0.64 7.51 -51.93 -0.39 0.25 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 45 H 0.06 0.72 7.39 -51.93 -0.38 0.34 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.11 1.65 7.10 -52.49 -0.37 1.28 16 49 H 0.12 2.17 8.04 -52.49 -0.42 1.75 16 LS Contribution 372.43 15.07 5.61 5.61 Total: -1.00 -29.68 372.43 -9.99 -39.68 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -8.67 Total: 1.92 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: -1.64 Total: -25.96 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: -0.27 Total: -38.15 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.68 -9.99 -39.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530720.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.571 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds