Wall clock time and date at job start Tue Mar 31 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47043 * 2 1 4 4 N 1.46895 * 109.47430 * 119.99721 * 2 1 3 5 5 C 1.46899 * 111.00292 * 170.67883 * 4 2 1 6 6 C 1.50700 * 109.47171 * 293.95521 * 5 4 2 7 7 H 1.07999 * 119.99468 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00085 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99835 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00002 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46832 * 60.00395 * 10 8 6 12 12 H 1.48494 * 109.47190 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47150 * 300.00769 * 10 8 6 14 14 C 1.46901 * 111.00165 * 294.63643 * 4 2 1 15 15 C 1.50696 * 109.47305 * 163.79274 * 14 4 2 16 16 C 1.38233 * 120.00273 * 275.48826 * 15 14 4 17 17 C 1.38231 * 120.00190 * 179.76281 * 16 15 14 18 18 C 1.38235 * 119.99965 * 0.51261 * 17 16 15 19 19 C 1.50701 * 120.00295 * 179.72448 * 18 17 16 20 20 C 1.53005 * 109.47149 * 240.02206 * 19 18 17 21 21 C 1.53004 * 109.46880 * 0.02562 * 19 18 17 22 22 C 1.52995 * 109.47657 * 120.02057 * 19 18 17 23 23 C 1.38236 * 120.00154 * 359.74009 * 18 17 16 24 24 C 1.38235 * 119.99722 * 0.02562 * 23 18 17 25 25 H 1.09005 * 109.46846 * 306.29936 * 1 2 3 26 26 H 1.08998 * 109.46956 * 66.30108 * 1 2 3 27 27 H 1.08998 * 109.47068 * 186.30000 * 1 2 3 28 28 H 1.09005 * 109.47183 * 240.00165 * 2 1 3 29 29 H 1.08997 * 109.47379 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46993 * 299.99898 * 3 2 1 31 31 H 1.09002 * 109.47718 * 59.99936 * 3 2 1 32 32 H 1.09001 * 109.46727 * 53.95277 * 5 4 2 33 33 H 1.08996 * 109.47221 * 173.95444 * 5 4 2 34 34 H 0.97003 * 120.00041 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47107 * 283.79437 * 14 4 2 36 36 H 1.08994 * 109.47231 * 43.79142 * 14 4 2 37 37 H 1.08001 * 119.99849 * 0.02562 * 16 15 14 38 38 H 1.07998 * 120.00410 * 180.23306 * 17 16 15 39 39 H 1.09004 * 109.46919 * 59.99464 * 20 19 18 40 40 H 1.08998 * 109.47442 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.46870 * 299.99783 * 20 19 18 42 42 H 1.08996 * 109.47024 * 59.99937 * 21 19 18 43 43 H 1.08998 * 109.46929 * 180.02562 * 21 19 18 44 44 H 1.09006 * 109.46830 * 299.99826 * 21 19 18 45 45 H 1.09002 * 109.47036 * 59.99805 * 22 19 18 46 46 H 1.09001 * 109.47336 * 180.02562 * 22 19 18 47 47 H 1.09003 * 109.46643 * 299.99973 * 22 19 18 48 48 H 1.07994 * 120.00409 * 179.97438 * 23 18 17 49 49 H 1.08001 * 120.00111 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 3.4712 -0.9074 1.1275 6 6 3.7820 -1.8667 0.0077 7 1 2.9814 -2.2755 -0.5910 8 6 5.0885 -2.2218 -0.2532 9 7 6.0633 -1.7236 0.4755 10 14 5.4738 -3.4115 -1.6408 11 1 4.9924 -2.8451 -2.9264 12 1 6.9409 -3.6288 -1.7136 13 1 4.7940 -4.7068 -1.3853 14 6 1.6563 0.0438 2.4176 15 6 1.8090 -0.8590 3.6145 16 6 0.7822 -1.7128 3.9718 17 6 0.9241 -2.5444 5.0668 18 6 2.0888 -2.5147 5.8109 19 6 2.2411 -3.4169 7.0083 20 6 2.4623 -2.5678 8.2618 21 6 0.9738 -4.2571 7.1784 22 6 3.4420 -4.3419 6.8006 23 6 3.1136 -1.6572 5.4567 24 6 2.9735 -0.8291 4.3588 25 1 -0.3633 0.6084 0.8283 26 1 -0.3633 0.4130 -0.9410 27 1 -0.3633 -1.0214 0.1128 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.9704 0.0434 0.9405 33 1 3.8240 -1.3237 2.0710 34 1 6.9825 -1.9737 0.2923 35 1 2.3109 0.9082 2.5286 36 1 0.6216 0.3786 2.3447 37 1 -0.1293 -1.7331 3.3928 38 1 0.1234 -3.2142 5.3437 39 1 1.6067 -1.9088 8.4098 40 1 2.5720 -3.2202 9.1280 41 1 3.3652 -1.9693 8.1405 42 1 0.8163 -4.8619 6.2854 43 1 1.0838 -4.9093 8.0448 44 1 0.1182 -3.5981 7.3265 45 1 4.3449 -3.7434 6.6794 46 1 3.5519 -4.9947 7.6666 47 1 3.2844 -4.9468 5.9077 48 1 4.0233 -1.6337 6.0383 49 1 3.7739 -0.1588 4.0824 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530720.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:49 Heat of formation + Delta-G solvation = -8.969582 kcal Electronic energy + Delta-G solvation = -23850.828275 eV Core-core repulsion = 20776.261032 eV Total energy + Delta-G solvation = -3074.567243 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.88511 -39.33556 -37.11522 -34.87282 -32.96699 -31.93574 -31.22424 -28.72318 -28.18120 -28.07400 -27.96094 -26.12251 -24.09290 -23.07520 -22.77047 -20.32753 -19.96962 -18.31175 -17.60004 -16.82499 -16.43526 -16.18464 -15.92897 -15.53592 -15.08813 -15.03194 -14.65574 -14.52386 -14.39728 -14.24787 -13.99186 -13.67319 -13.54926 -13.17415 -12.94774 -12.84584 -12.71957 -12.64341 -12.57953 -12.50941 -12.41356 -12.33199 -12.18529 -11.96474 -11.78664 -11.71328 -11.54304 -11.33751 -11.25416 -11.12469 -10.57445 -9.68227 -9.32709 -8.86644 -8.17415 -6.25672 0.54083 0.62590 1.38096 1.41297 1.48773 2.40240 2.87799 3.15255 3.53049 3.73104 3.86920 4.08392 4.11511 4.16658 4.17320 4.23552 4.36858 4.44866 4.46498 4.59205 4.60943 4.70116 4.74892 4.80582 4.81019 4.86787 4.90488 4.93246 5.02075 5.03956 5.06113 5.10674 5.12600 5.22560 5.26874 5.28088 5.29960 5.32754 5.43102 5.47538 5.49105 5.56651 5.67426 5.70229 5.82382 5.87539 6.12843 6.24148 6.47889 6.72992 6.91211 7.42744 8.93124 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.004950 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.460742 B = 5654.858995 C = 6951.614969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.074 3.926 3 C -0.172 4.172 4 N -0.528 5.528 5 C 0.209 3.791 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.961 3.039 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.271 1.271 14 C 0.093 3.907 15 C -0.084 4.084 16 C -0.104 4.104 17 C -0.127 4.127 18 C -0.078 4.078 19 C -0.028 4.028 20 C -0.134 4.134 21 C -0.140 4.140 22 C -0.139 4.139 23 C -0.125 4.125 24 C -0.125 4.125 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.025 0.975 30 H 0.073 0.927 31 H 0.060 0.940 32 H -0.037 1.037 33 H 0.008 0.992 34 H 0.262 0.738 35 H 0.020 0.980 36 H 0.097 0.903 37 H 0.132 0.868 38 H 0.146 0.854 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.046 0.954 46 H 0.077 0.923 47 H 0.042 0.958 48 H 0.121 0.879 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.023 -0.407 12.272 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.035 4.035 3 C -0.231 4.231 4 N -0.252 5.252 5 C 0.083 3.917 6 C -0.556 4.556 7 H 0.076 0.924 8 C -0.195 4.195 9 N -0.575 5.575 10 Si 0.786 3.214 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.196 1.196 14 C -0.034 4.034 15 C -0.085 4.085 16 C -0.123 4.123 17 C -0.145 4.145 18 C -0.079 4.079 19 C -0.028 4.028 20 C -0.191 4.191 21 C -0.197 4.197 22 C -0.196 4.196 23 C -0.143 4.143 24 C -0.143 4.143 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.079 0.921 32 H -0.019 1.019 33 H 0.026 0.974 34 H 0.070 0.930 35 H 0.038 0.962 36 H 0.115 0.885 37 H 0.150 0.850 38 H 0.164 0.836 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.095 0.905 47 H 0.061 0.939 48 H 0.139 0.861 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.069 -0.864 12.299 17.253 hybrid contribution 1.610 0.496 -1.014 1.966 sum -10.460 -0.367 11.285 15.391 Atomic orbital electron populations 1.21778 0.92652 1.02063 1.02191 1.21686 0.96308 0.92012 0.93463 1.22334 1.00040 0.98252 1.02439 1.62291 1.15291 1.46644 1.00926 1.19356 0.83154 0.93286 0.95883 1.21442 0.92155 1.26347 1.15699 0.92386 1.25827 0.96158 0.98279 0.99202 1.70084 0.99934 1.45915 1.41519 0.85557 0.76887 0.79358 0.79565 1.19174 1.20904 1.19620 1.21052 1.01024 0.92870 0.88460 1.19889 0.94456 0.98578 0.95569 1.21123 0.98877 0.95372 0.96895 1.21381 0.98261 0.99494 0.95320 1.20027 0.93741 0.96744 0.97347 1.19534 0.96945 0.94062 0.92237 1.21856 1.01637 0.99524 0.96080 1.21936 0.96081 0.99500 1.02202 1.21897 0.96821 0.99043 1.01860 1.20988 0.99244 0.96854 0.97248 1.21064 0.96850 1.00218 0.96215 0.91879 0.90975 0.92571 0.91970 0.95566 0.90827 0.92076 1.01948 0.97362 0.92954 0.96184 0.88467 0.85016 0.83610 0.92470 0.90735 0.93169 0.92720 0.90923 0.91626 0.93478 0.90452 0.93867 0.86099 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 8.99 71.98 0.65 -3.03 16 2 C 0.07 2.81 2.78 44.92 0.13 2.93 16 3 C -0.17 -6.05 8.51 71.98 0.61 -5.44 16 4 N -0.53 -22.96 4.39 -880.09 -3.87 -26.82 16 5 C 0.21 11.39 4.43 85.56 0.38 11.77 16 6 C -0.52 -30.14 8.38 25.60 0.21 -29.93 16 7 H 0.06 3.33 7.17 -2.91 -0.02 3.31 16 8 C 0.00 0.18 5.46 84.66 0.46 0.64 16 9 N -0.93 -57.65 13.29 21.45 0.28 -57.37 16 10 Si 0.96 45.58 29.54 68.60 2.03 47.60 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 14 C 0.09 3.46 3.86 85.56 0.33 3.79 16 15 C -0.08 -3.12 4.93 -19.87 -0.10 -3.22 16 16 C -0.10 -3.33 9.72 22.27 0.22 -3.11 16 17 C -0.13 -3.60 8.98 22.27 0.20 -3.40 16 18 C -0.08 -2.25 4.76 -19.87 -0.09 -2.34 16 19 C -0.03 -0.61 0.85 -52.93 -0.05 -0.65 16 20 C -0.13 -2.50 8.29 71.98 0.60 -1.90 16 21 C -0.14 -2.47 7.13 71.98 0.51 -1.96 16 22 C -0.14 -3.16 8.29 71.98 0.60 -2.56 16 23 C -0.13 -4.17 8.71 22.27 0.19 -3.98 16 24 C -0.12 -4.78 8.29 22.27 0.18 -4.60 16 25 H 0.06 1.58 6.53 -2.38 -0.02 1.56 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 28 H 0.06 2.72 6.66 -2.38 -0.02 2.70 16 29 H 0.03 1.09 6.55 -2.39 -0.02 1.07 16 30 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.06 1.93 6.70 -2.39 -0.02 1.92 16 32 H -0.04 -2.19 6.37 -2.39 -0.02 -2.21 16 33 H 0.01 0.49 6.17 -2.39 -0.01 0.48 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.02 0.78 7.05 -2.39 -0.02 0.76 16 36 H 0.10 3.01 5.99 -2.39 -0.01 2.99 16 37 H 0.13 3.71 8.06 -2.91 -0.02 3.68 16 38 H 0.15 3.28 5.90 -2.91 -0.02 3.26 16 39 H 0.06 1.04 8.14 -2.38 -0.02 1.03 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.05 1.00 7.39 -2.39 -0.02 0.98 16 42 H 0.05 1.03 7.51 -2.39 -0.02 1.01 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.06 1.06 7.51 -2.38 -0.02 1.04 16 45 H 0.05 1.15 7.39 -2.39 -0.02 1.14 16 46 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.12 3.69 7.10 -2.91 -0.02 3.67 16 49 H 0.10 3.94 8.04 -2.91 -0.02 3.91 16 Total: -1.00 -66.74 372.43 4.37 -62.37 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.89 Total: 21.21 kcal Atomic # 6 Polarization: -52.03 SS G_CDS: 5.03 Total: -46.99 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -3.58 Total: -84.19 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -66.74 4.37 -62.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530720.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.397 kcal (2) G-P(sol) polarization free energy of solvation -66.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds