Wall clock time and date at job start Tue Mar 31 2020 06:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47207 * 2 1 4 4 C 1.50693 * 109.47564 * 240.00016 * 2 1 3 5 5 H 1.08007 * 120.00278 * 240.00249 * 4 2 1 6 6 C 1.37880 * 119.99917 * 59.99816 * 4 2 1 7 7 N 1.31508 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99875 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47024 * 90.00201 * 8 6 4 10 10 H 1.48497 * 109.47350 * 209.99981 * 8 6 4 11 11 H 1.48497 * 109.47242 * 330.00450 * 8 6 4 12 12 N 1.46500 * 109.46759 * 119.99629 * 2 1 3 13 13 S 1.65594 * 120.00340 * 264.99895 * 12 2 1 14 14 O 1.42093 * 106.40758 * 311.46436 * 13 12 2 15 15 O 1.42103 * 106.40366 * 178.54156 * 13 12 2 16 16 C 1.76204 * 107.21740 * 65.00668 * 13 12 2 17 17 C 1.38709 * 120.40638 * 89.99815 * 16 13 12 18 18 C 1.38563 * 118.43531 * 180.30288 * 17 16 13 19 19 C 1.38402 * 119.14993 * 359.44939 * 18 17 16 20 20 Cl 1.73600 * 119.63349 * 180.25608 * 19 18 17 21 21 N 1.31949 * 120.72928 * 0.56315 * 19 18 17 22 22 C 1.31902 * 121.70480 * 359.71509 * 21 19 18 23 23 H 1.09007 * 109.46818 * 60.00246 * 1 2 3 24 24 H 1.08998 * 109.46798 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47429 * 300.00044 * 1 2 3 26 26 H 0.97001 * 119.99725 * 180.02562 * 7 6 4 27 27 H 0.97002 * 119.99485 * 85.00748 * 12 2 1 28 28 H 1.08002 * 120.77808 * 0.02562 * 17 16 13 29 29 H 1.07999 * 120.42243 * 179.72709 * 18 17 16 30 30 H 1.08006 * 119.60969 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6994 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3228 -1.1195 -4.0079 9 1 1.3451 -2.1615 -4.4123 10 1 2.4875 -0.1402 -5.1120 11 1 3.6311 -1.7565 -3.7118 12 7 2.0183 -0.6905 1.1962 13 16 2.4121 0.1772 2.5505 14 8 3.2435 1.2443 2.1158 15 8 2.8122 -0.7697 3.5316 16 6 0.9273 0.9147 3.1475 17 6 0.1294 0.2445 4.0630 18 6 -1.0326 0.8599 4.5003 19 6 -1.3501 2.1189 4.0212 20 17 -2.7994 2.9042 4.5658 21 7 -0.5666 2.7263 3.1505 22 6 0.5436 2.1673 2.7090 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7090 1.1613 -3.4844 27 1 2.1109 -1.6561 1.1949 28 1 0.4050 -0.7357 4.4230 29 1 -1.6798 0.3652 5.2094 30 1 1.1601 2.6953 1.9965 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392174.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:44 Heat of formation + Delta-G solvation = -47.294024 kcal Electronic energy + Delta-G solvation = -18953.809385 eV Core-core repulsion = 15709.142001 eV Total energy + Delta-G solvation = -3244.667383 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.30985 -36.93861 -36.89437 -35.58723 -35.49327 -32.89858 -32.28306 -31.40813 -28.43870 -25.34160 -24.09577 -24.03607 -21.08113 -19.26962 -18.07242 -17.62334 -17.01633 -16.89979 -16.07920 -15.28213 -14.72080 -14.69708 -14.59330 -13.72450 -13.55396 -13.13626 -12.79056 -12.33948 -12.11130 -11.87002 -11.78506 -11.66500 -11.58065 -11.27568 -11.12437 -11.03934 -10.71103 -10.45774 -10.30436 -10.16675 -9.81150 -9.45093 -9.28774 -8.74050 -8.40657 -6.19464 -4.27282 0.29836 0.80564 0.94428 1.51759 3.19372 3.22774 3.30421 3.33379 3.58600 4.08764 4.24165 4.30650 4.39284 4.61286 4.76971 5.10303 5.13978 5.38674 5.46228 5.65692 6.17816 6.18970 6.62902 6.66830 6.87505 7.40837 7.44634 7.56001 7.73326 7.90498 8.15825 8.75089 9.39280 10.86712 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.005286 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.326225 B = 5295.960293 C = 6222.313637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.266 3.734 3 H 0.053 0.947 4 C -0.523 4.523 5 H 0.066 0.934 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 N -1.094 6.094 13 S 2.695 3.305 14 O -0.952 6.952 15 O -0.975 6.975 16 C -0.725 4.725 17 C 0.038 3.962 18 C -0.181 4.181 19 C 0.219 3.781 20 Cl -0.027 7.027 21 N -0.489 5.489 22 C 0.229 3.771 23 H 0.096 0.904 24 H 0.035 0.965 25 H 0.007 0.993 26 H 0.266 0.734 27 H 0.412 0.588 28 H 0.161 0.839 29 H 0.153 0.847 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.077 -0.294 12.509 13.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.162 3.838 3 H 0.071 0.929 4 C -0.562 4.562 5 H 0.084 0.916 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.856 5.856 13 S 2.779 3.221 14 O -0.942 6.942 15 O -0.965 6.965 16 C -0.810 4.810 17 C 0.012 3.988 18 C -0.202 4.202 19 C 0.055 3.945 20 Cl 0.002 6.998 21 N -0.200 5.200 22 C 0.071 3.929 23 H 0.114 0.886 24 H 0.055 0.945 25 H 0.026 0.974 26 H 0.076 0.924 27 H 0.246 0.754 28 H 0.178 0.822 29 H 0.171 0.829 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.768 1.060 12.508 13.428 hybrid contribution -0.588 -1.333 -0.546 1.556 sum -5.356 -0.273 11.962 13.109 Atomic orbital electron populations 1.22316 0.98601 1.00082 1.00796 1.18684 0.90675 0.93245 0.81170 0.92935 1.21173 1.32156 1.13292 0.89619 0.91583 1.24917 0.94806 0.94975 0.99145 1.69847 1.36068 1.22469 1.24123 0.86419 0.79277 0.79241 0.82027 1.20611 1.21046 1.19719 1.55537 1.83631 1.19294 1.27176 1.01949 0.73450 0.73754 0.72904 1.93597 1.62526 1.56668 1.81386 1.93535 1.80925 1.61676 1.60382 1.32472 1.27030 1.08711 1.12756 1.21331 0.89942 0.98553 0.89002 1.21887 0.99464 0.94937 1.03948 1.22002 0.89717 0.90210 0.92596 1.98419 1.32960 1.81420 1.86998 1.67179 1.05131 1.36614 1.11113 1.22598 0.89278 0.89367 0.91651 0.88560 0.94543 0.97421 0.92448 0.75380 0.82163 0.82949 0.79843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 9.29 37.16 0.35 -3.07 16 2 C 0.27 5.99 2.89 -69.09 -0.20 5.79 16 3 H 0.05 1.28 7.50 -51.93 -0.39 0.89 16 4 C -0.52 -13.13 8.76 -34.44 -0.30 -13.43 16 5 H 0.07 1.61 7.81 -52.48 -0.41 1.20 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.57 11.32 55.43 0.63 -22.94 16 8 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 12 N -1.09 -20.15 5.46 -5.88 -0.03 -20.18 16 13 S 2.69 46.08 5.73 -107.50 -0.62 45.46 16 14 O -0.95 -19.13 16.64 -57.17 -0.95 -20.08 16 15 O -0.98 -17.15 17.36 -57.17 -0.99 -18.14 16 16 C -0.72 -11.03 5.08 -39.44 -0.20 -11.23 16 17 C 0.04 0.49 9.65 -39.29 -0.38 0.11 16 18 C -0.18 -2.11 9.88 -39.40 -0.39 -2.50 16 19 C 0.22 3.01 7.27 -17.44 -0.13 2.88 16 20 Cl -0.03 -0.31 29.11 -51.86 -1.51 -1.82 16 21 N -0.49 -7.79 10.34 -10.36 -0.11 -7.90 16 22 C 0.23 3.68 9.74 -17.55 -0.17 3.51 16 23 H 0.10 2.33 6.07 -51.92 -0.32 2.02 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.01 0.13 6.17 -51.93 -0.32 -0.19 16 26 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 27 H 0.41 6.78 8.83 -34.47 -0.30 6.48 16 28 H 0.16 1.62 7.71 -52.49 -0.40 1.21 16 29 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.18 2.87 7.63 -52.48 -0.40 2.47 16 LS Contribution 290.92 15.07 4.38 4.38 Total: -1.00 -29.96 290.92 -8.26 -38.22 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -2.52 Total: 4.32 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -1.52 Total: -16.38 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.49 Total: -51.03 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -1.94 Total: -38.22 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 46.08 SS G_CDS: -0.62 Total: 45.46 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.51 Total: -1.82 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.96 -8.26 -38.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392174.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.071 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds