Wall clock time and date at job start Tue Mar 31 2020 06:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47207 * 2 1 4 4 C 1.50693 * 109.47564 * 240.00016 * 2 1 3 5 5 H 1.08007 * 120.00278 * 240.00249 * 4 2 1 6 6 C 1.37880 * 119.99917 * 59.99816 * 4 2 1 7 7 N 1.31508 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99875 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47024 * 90.00201 * 8 6 4 10 10 H 1.48497 * 109.47350 * 209.99981 * 8 6 4 11 11 H 1.48497 * 109.47242 * 330.00450 * 8 6 4 12 12 N 1.46500 * 109.46759 * 119.99629 * 2 1 3 13 13 S 1.65594 * 120.00340 * 264.99895 * 12 2 1 14 14 O 1.42093 * 106.40758 * 311.46436 * 13 12 2 15 15 O 1.42103 * 106.40366 * 178.54156 * 13 12 2 16 16 C 1.76204 * 107.21740 * 65.00668 * 13 12 2 17 17 C 1.38709 * 120.40638 * 89.99815 * 16 13 12 18 18 C 1.38563 * 118.43531 * 180.30288 * 17 16 13 19 19 C 1.38402 * 119.14993 * 359.44939 * 18 17 16 20 20 Cl 1.73600 * 119.63349 * 180.25608 * 19 18 17 21 21 N 1.31949 * 120.72928 * 0.56315 * 19 18 17 22 22 C 1.31902 * 121.70480 * 359.71509 * 21 19 18 23 23 H 1.09007 * 109.46818 * 60.00246 * 1 2 3 24 24 H 1.08998 * 109.46798 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47429 * 300.00044 * 1 2 3 26 26 H 0.97001 * 119.99725 * 180.02562 * 7 6 4 27 27 H 0.97002 * 119.99485 * 85.00748 * 12 2 1 28 28 H 1.08002 * 120.77808 * 0.02562 * 17 16 13 29 29 H 1.07999 * 120.42243 * 179.72709 * 18 17 16 30 30 H 1.08006 * 119.60969 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6994 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3228 -1.1195 -4.0079 9 1 1.3451 -2.1615 -4.4123 10 1 2.4875 -0.1402 -5.1120 11 1 3.6311 -1.7565 -3.7118 12 7 2.0183 -0.6905 1.1962 13 16 2.4121 0.1772 2.5505 14 8 3.2435 1.2443 2.1158 15 8 2.8122 -0.7697 3.5316 16 6 0.9273 0.9147 3.1475 17 6 0.1294 0.2445 4.0630 18 6 -1.0326 0.8599 4.5003 19 6 -1.3501 2.1189 4.0212 20 17 -2.7994 2.9042 4.5658 21 7 -0.5666 2.7263 3.1505 22 6 0.5436 2.1673 2.7090 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7090 1.1613 -3.4844 27 1 2.1109 -1.6561 1.1949 28 1 0.4050 -0.7357 4.4230 29 1 -1.6798 0.3652 5.2094 30 1 1.1601 2.6953 1.9965 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050392174.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:44 Heat of formation + Delta-G solvation = -69.453972 kcal Electronic energy + Delta-G solvation = -18954.770312 eV Core-core repulsion = 15709.142001 eV Total energy + Delta-G solvation = -3245.628311 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.40499 -38.37507 -37.90402 -37.28629 -36.96552 -34.13700 -33.97779 -32.50592 -30.14996 -27.24595 -25.22588 -25.11746 -22.84720 -20.65481 -19.36589 -19.08749 -18.26233 -18.10005 -17.69495 -17.01350 -16.24592 -15.78796 -15.70279 -15.36579 -14.57056 -14.54192 -14.31560 -14.04217 -13.56208 -13.28002 -13.22718 -13.13910 -12.91651 -12.80511 -12.57783 -12.46667 -12.31991 -12.23614 -11.99077 -11.39948 -11.14014 -10.94375 -10.59151 -10.48284 -10.10624 -8.13343 -6.26985 -0.85093 -0.54147 -0.10227 0.50283 1.46882 1.49332 1.58322 1.98039 2.26965 2.46473 2.73613 3.14911 3.17965 3.20274 3.63591 3.69247 3.93509 4.38451 4.43759 4.50867 4.61249 4.88223 4.95413 5.11369 5.13814 5.59150 5.75009 6.03583 6.11169 6.29873 6.41562 6.83411 7.42775 8.91813 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.005286 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.326225 B = 5295.960293 C = 6222.313637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.271 3.729 3 H 0.027 0.973 4 C -0.540 4.540 5 H 0.069 0.931 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.269 1.269 12 N -1.094 6.094 13 S 2.716 3.284 14 O -0.988 6.988 15 O -0.976 6.976 16 C -0.730 4.730 17 C 0.041 3.959 18 C -0.164 4.164 19 C 0.205 3.795 20 Cl -0.010 7.010 21 N -0.513 5.513 22 C 0.212 3.788 23 H 0.068 0.932 24 H 0.042 0.958 25 H 0.027 0.973 26 H 0.265 0.735 27 H 0.421 0.579 28 H 0.192 0.808 29 H 0.195 0.805 30 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 -1.677 13.848 15.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.045 0.955 4 C -0.579 4.579 5 H 0.087 0.913 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.786 3.214 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.193 1.193 12 N -0.856 5.856 13 S 2.804 3.196 14 O -0.978 6.978 15 O -0.966 6.966 16 C -0.819 4.819 17 C 0.014 3.986 18 C -0.185 4.185 19 C 0.042 3.958 20 Cl 0.019 6.981 21 N -0.224 5.224 22 C 0.054 3.946 23 H 0.086 0.914 24 H 0.061 0.939 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.257 0.743 28 H 0.209 0.791 29 H 0.212 0.788 30 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.657 -0.358 13.848 14.963 hybrid contribution -0.382 -0.862 -0.828 1.255 sum -6.039 -1.220 13.020 14.404 Atomic orbital electron populations 1.22111 0.97781 1.00269 1.00375 1.18353 0.91187 0.91994 0.81868 0.95529 1.21579 1.32032 1.13459 0.90860 0.91326 1.25656 0.95098 0.95647 1.01838 1.69975 1.37091 1.23648 1.24523 0.85514 0.78891 0.78198 0.78763 1.19910 1.21277 1.19342 1.55307 1.83720 1.19806 1.26783 1.01049 0.73441 0.72884 0.72223 1.93550 1.64580 1.57719 1.81949 1.93527 1.81385 1.61809 1.59898 1.32052 1.26680 1.08752 1.14366 1.21788 0.89566 0.99492 0.87709 1.22333 0.99115 0.93760 1.03289 1.22423 0.89983 0.91177 0.92261 1.98425 1.31734 1.81320 1.86603 1.67142 1.05482 1.37520 1.12306 1.22503 0.89808 0.89977 0.92325 0.91372 0.93866 0.95431 0.92583 0.74323 0.79132 0.78750 0.80926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.26 9.29 71.98 0.67 -5.59 16 2 C 0.27 12.31 2.89 44.24 0.13 12.44 16 3 H 0.03 1.35 7.50 -2.39 -0.02 1.34 16 4 C -0.54 -27.19 8.76 25.60 0.22 -26.97 16 5 H 0.07 3.33 7.81 -2.91 -0.02 3.30 16 6 C 0.02 0.93 5.30 84.66 0.45 1.38 16 7 N -0.91 -49.36 11.32 21.45 0.24 -49.12 16 8 Si 0.96 41.13 29.54 68.60 2.03 43.16 16 9 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 10 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 12 N -1.09 -39.76 5.46 -172.53 -0.94 -40.70 16 13 S 2.72 91.36 5.73 -56.49 -0.32 91.04 16 14 O -0.99 -40.51 16.64 -128.00 -2.13 -42.64 16 15 O -0.98 -32.64 17.36 -128.00 -2.22 -34.86 16 16 C -0.73 -21.34 5.08 22.36 0.11 -21.22 16 17 C 0.04 0.91 9.65 22.46 0.22 1.12 16 18 C -0.16 -3.23 9.88 22.39 0.22 -3.01 16 19 C 0.21 5.19 7.27 84.71 0.62 5.81 16 20 Cl -0.01 -0.20 29.11 -2.72 -0.08 -0.28 16 21 N -0.51 -15.98 10.34 -186.68 -1.93 -17.91 16 22 C 0.21 6.82 9.74 84.66 0.82 7.64 16 23 H 0.07 3.35 6.07 -2.38 -0.01 3.33 16 24 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.03 1.03 6.17 -2.39 -0.01 1.01 16 26 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 27 H 0.42 13.43 8.83 -96.75 -0.85 12.58 16 28 H 0.19 3.02 7.71 -2.91 -0.02 3.00 16 29 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.17 5.71 7.63 -2.91 -0.02 5.69 16 Total: -1.00 -63.92 290.92 -1.56 -65.48 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.34 Total: 14.25 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: 3.46 Total: -28.41 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -2.63 Total: -107.74 kcal Atomic # 8 Polarization: -73.15 SS G_CDS: -4.35 Total: -77.50 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 16 Polarization: 91.36 SS G_CDS: -0.32 Total: 91.04 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.08 Total: -0.28 kcal Total: -63.92 -1.56 -65.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392174.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.978 kcal (2) G-P(sol) polarization free energy of solvation -63.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds