Wall clock time and date at job start Tue Mar 31 2020 06:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46568 * 2 1 4 4 C 1.50696 * 109.47280 * 240.00067 * 2 1 3 5 5 H 1.07997 * 119.99895 * 240.00237 * 4 2 1 6 6 C 1.37875 * 120.00024 * 59.99189 * 4 2 1 7 7 N 1.31512 * 120.00038 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99873 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46983 * 60.00957 * 8 6 4 10 10 H 1.48500 * 109.47218 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47438 * 300.00713 * 8 6 4 12 12 N 1.46498 * 109.47075 * 119.99782 * 2 1 3 13 13 S 1.65602 * 120.00195 * 264.21387 * 12 2 1 14 14 O 1.42095 * 106.40564 * 183.21213 * 13 12 2 15 15 O 1.42107 * 106.40181 * 50.29122 * 13 12 2 16 16 C 1.76201 * 107.21579 * 296.75419 * 13 12 2 17 17 C 1.38613 * 120.42356 * 115.53779 * 16 13 12 18 18 C 1.38667 * 118.43364 * 180.24143 * 17 16 13 19 19 C 1.38180 * 119.19318 * 359.50522 * 18 17 16 20 20 N 1.31877 * 120.78056 * 0.25058 * 19 18 17 21 21 C 1.31966 * 121.70828 * 0.02562 * 20 19 18 22 22 Cl 1.73601 * 119.63768 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.47358 * 60.00190 * 1 2 3 24 24 H 1.08999 * 109.47213 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47147 * 300.00081 * 1 2 3 26 26 H 0.97001 * 119.99610 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00302 * 84.21576 * 12 2 1 28 28 H 1.08007 * 120.78596 * 0.02562 * 17 16 13 29 29 H 1.08003 * 120.40397 * 179.77781 * 18 17 16 30 30 H 1.08004 * 119.61129 * 180.23312 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8300 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8281 -2.5198 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8075 -1.1190 -4.0077 12 7 2.0184 -0.6906 1.1962 13 16 2.4307 0.1789 2.5439 14 8 2.9304 -0.7577 3.4884 15 8 1.3368 1.0454 2.8127 16 6 3.7875 1.2128 2.1026 17 6 3.6518 2.5922 2.1143 18 6 4.7447 3.3662 1.7548 19 6 5.9281 2.7422 1.4091 20 7 6.0239 1.4269 1.4136 21 6 5.0035 0.6583 1.7448 22 17 5.1891 -1.0677 1.7317 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.7093 1.1615 -3.4844 27 1 2.1002 -1.6571 1.1988 28 1 2.7158 3.0532 2.3935 29 1 4.6732 4.4439 1.7493 30 1 6.7847 3.3386 1.1316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392185.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:50 Heat of formation + Delta-G solvation = -43.027130 kcal Electronic energy + Delta-G solvation = -19389.686980 eV Core-core repulsion = 16145.204623 eV Total energy + Delta-G solvation = -3244.482357 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.18201 -36.95449 -36.53191 -35.49042 -35.42258 -32.81110 -32.24909 -31.26218 -28.33379 -25.24858 -24.22914 -23.73820 -21.00538 -19.27704 -17.98259 -17.46151 -16.97857 -16.70162 -16.05982 -15.25463 -14.71455 -14.63114 -14.49736 -13.64898 -13.49096 -12.90342 -12.68519 -12.25575 -11.81024 -11.75067 -11.68734 -11.62491 -11.25326 -11.16669 -11.08344 -10.99771 -10.63435 -10.38511 -10.25770 -10.12557 -9.72257 -9.26618 -9.21645 -8.66725 -8.36394 -6.17279 -4.25297 0.44657 0.89046 1.00829 1.71427 3.24118 3.28798 3.30035 3.34084 3.57534 4.09355 4.31904 4.38995 4.45537 4.71501 5.04812 5.09620 5.14769 5.26796 5.64110 5.81141 6.24718 6.27795 6.77361 7.00108 7.04113 7.48763 7.53388 7.65795 7.75726 7.98928 8.22377 8.78039 9.41462 10.88309 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.015797 B = 0.007598 C = 0.006865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.084136 B = 3684.339704 C = 4077.878248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.276 3.724 3 H 0.037 0.963 4 C -0.525 4.525 5 H 0.065 0.935 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.276 1.276 12 N -1.092 6.092 13 S 2.690 3.310 14 O -0.964 6.964 15 O -0.958 6.958 16 C -0.709 4.709 17 C 0.036 3.964 18 C -0.193 4.193 19 C 0.162 3.838 20 N -0.492 5.492 21 C 0.274 3.726 22 Cl 0.000 7.000 23 H 0.092 0.908 24 H 0.034 0.966 25 H 0.025 0.975 26 H 0.265 0.735 27 H 0.412 0.588 28 H 0.163 0.837 29 H 0.151 0.849 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.541 3.936 7.445 10.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.172 3.828 3 H 0.055 0.945 4 C -0.564 4.564 5 H 0.084 0.916 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.725 3.275 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.854 5.854 13 S 2.774 3.226 14 O -0.954 6.954 15 O -0.947 6.947 16 C -0.795 4.795 17 C 0.009 3.991 18 C -0.214 4.214 19 C 0.005 3.995 20 N -0.204 5.204 21 C 0.108 3.892 22 Cl 0.029 6.971 23 H 0.111 0.889 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.247 0.753 28 H 0.181 0.819 29 H 0.169 0.831 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.894 3.714 7.870 11.102 hybrid contribution 0.263 -0.200 -1.334 1.375 sum 7.157 3.514 6.536 10.310 Atomic orbital electron populations 1.22230 0.97844 1.00136 1.01494 1.18530 0.91588 0.91858 0.80811 0.94496 1.21250 1.31996 1.13320 0.89881 0.91644 1.24898 0.94800 0.94995 0.99044 1.69863 1.36052 1.22573 1.24037 0.86557 0.79249 0.79810 0.81841 1.20038 1.21187 1.20171 1.55519 1.80026 1.18384 1.31512 1.02136 0.73541 0.73542 0.73429 1.93576 1.81191 1.60855 1.59811 1.93568 1.49348 1.68022 1.83797 1.31984 1.17783 1.10533 1.19173 1.21474 0.99533 0.90664 0.87433 1.22294 0.94283 1.02147 1.02682 1.22983 0.97364 0.89119 0.90007 1.67158 1.31098 1.06602 1.15532 1.21106 0.88894 0.88491 0.90752 1.98470 1.97634 1.05220 1.95764 0.88932 0.94698 0.95585 0.92519 0.75329 0.81948 0.83133 0.81229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 9.29 37.16 0.35 -3.33 16 2 C 0.28 6.45 2.77 -69.08 -0.19 6.26 16 3 H 0.04 0.91 7.76 -51.93 -0.40 0.51 16 4 C -0.52 -13.29 8.76 -34.44 -0.30 -13.59 16 5 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -23.74 11.32 55.43 0.63 -23.11 16 8 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 N -1.09 -21.73 5.24 -5.88 -0.03 -21.76 16 13 S 2.69 50.54 4.98 -107.50 -0.54 50.01 16 14 O -0.96 -18.73 16.54 -57.17 -0.95 -19.67 16 15 O -0.96 -19.41 16.43 -57.17 -0.94 -20.35 16 16 C -0.71 -12.43 5.65 -39.40 -0.22 -12.65 16 17 C 0.04 0.52 9.66 -39.28 -0.38 0.14 16 18 C -0.19 -2.30 10.11 -39.44 -0.40 -2.70 16 19 C 0.16 2.03 11.18 -17.55 -0.20 1.84 16 20 N -0.49 -8.05 10.34 -10.36 -0.11 -8.16 16 21 C 0.27 4.89 7.26 -17.45 -0.13 4.76 16 22 Cl 0.00 0.00 26.66 -51.86 -1.38 -1.38 16 23 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.03 0.56 7.72 -51.93 -0.40 0.16 16 26 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.41 7.49 8.84 -34.47 -0.30 7.19 16 28 H 0.16 2.12 7.44 -52.48 -0.39 1.72 16 29 H 0.15 1.18 8.06 -52.48 -0.42 0.75 16 30 H 0.17 1.40 8.06 -52.48 -0.42 0.97 16 LS Contribution 290.57 15.07 4.38 4.38 Total: -1.00 -30.58 290.57 -8.15 -38.73 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -2.63 Total: 3.64 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -1.57 Total: -17.66 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.49 Total: -53.03 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -1.89 Total: -40.02 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 50.54 SS G_CDS: -0.54 Total: 50.01 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.38 Total: -1.38 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.58 -8.15 -38.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392185.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.295 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds