Wall clock time and date at job start Tue Mar 31 2020 06:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46568 * 2 1 4 4 C 1.50696 * 109.47280 * 240.00067 * 2 1 3 5 5 H 1.07997 * 119.99895 * 240.00237 * 4 2 1 6 6 C 1.37875 * 120.00024 * 59.99189 * 4 2 1 7 7 N 1.31512 * 120.00038 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99873 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46983 * 60.00957 * 8 6 4 10 10 H 1.48500 * 109.47218 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47438 * 300.00713 * 8 6 4 12 12 N 1.46498 * 109.47075 * 119.99782 * 2 1 3 13 13 S 1.65602 * 120.00195 * 264.21387 * 12 2 1 14 14 O 1.42095 * 106.40564 * 183.21213 * 13 12 2 15 15 O 1.42107 * 106.40181 * 50.29122 * 13 12 2 16 16 C 1.76201 * 107.21579 * 296.75419 * 13 12 2 17 17 C 1.38613 * 120.42356 * 115.53779 * 16 13 12 18 18 C 1.38667 * 118.43364 * 180.24143 * 17 16 13 19 19 C 1.38180 * 119.19318 * 359.50522 * 18 17 16 20 20 N 1.31877 * 120.78056 * 0.25058 * 19 18 17 21 21 C 1.31966 * 121.70828 * 0.02562 * 20 19 18 22 22 Cl 1.73601 * 119.63768 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.47358 * 60.00190 * 1 2 3 24 24 H 1.08999 * 109.47213 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47147 * 300.00081 * 1 2 3 26 26 H 0.97001 * 119.99610 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00302 * 84.21576 * 12 2 1 28 28 H 1.08007 * 120.78596 * 0.02562 * 17 16 13 29 29 H 1.08003 * 120.40397 * 179.77781 * 18 17 16 30 30 H 1.08004 * 119.61129 * 180.23312 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8300 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8281 -2.5198 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8075 -1.1190 -4.0077 12 7 2.0184 -0.6906 1.1962 13 16 2.4307 0.1789 2.5439 14 8 2.9304 -0.7577 3.4884 15 8 1.3368 1.0454 2.8127 16 6 3.7875 1.2128 2.1026 17 6 3.6518 2.5922 2.1143 18 6 4.7447 3.3662 1.7548 19 6 5.9281 2.7422 1.4091 20 7 6.0239 1.4269 1.4136 21 6 5.0035 0.6583 1.7448 22 17 5.1891 -1.0677 1.7317 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.7093 1.1615 -3.4844 27 1 2.1002 -1.6571 1.1988 28 1 2.7158 3.0532 2.3935 29 1 4.6732 4.4439 1.7493 30 1 6.7847 3.3386 1.1316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050392185.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:50 Heat of formation + Delta-G solvation = -65.614153 kcal Electronic energy + Delta-G solvation = -19390.666427 eV Core-core repulsion = 16145.204623 eV Total energy + Delta-G solvation = -3245.461804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.31121 -38.42986 -37.89273 -37.26122 -36.97186 -34.13168 -33.96284 -32.38200 -30.14075 -27.21377 -25.37083 -24.89402 -22.84224 -20.73711 -19.40320 -18.97655 -18.32459 -17.91851 -17.71740 -17.04122 -16.27074 -15.78251 -15.71462 -15.33259 -14.67337 -14.52026 -14.12855 -13.90760 -13.54580 -13.29755 -13.21963 -13.02443 -12.92983 -12.81814 -12.57802 -12.42245 -12.38398 -12.20872 -12.00915 -11.49183 -11.15488 -10.88301 -10.57607 -10.34892 -10.13423 -8.13519 -6.26604 -0.77194 -0.51999 -0.11791 0.46203 1.45186 1.45986 1.52741 1.97489 2.29108 2.44910 2.65444 3.16311 3.18733 3.35466 3.68882 3.82239 4.02901 4.20291 4.47241 4.60804 4.80775 4.92094 5.11898 5.17475 5.30344 5.60451 5.75583 6.02839 6.08559 6.37920 6.39521 6.83113 7.42689 8.91426 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.015797 B = 0.007598 C = 0.006865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.084136 B = 3684.339704 C = 4077.878248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.283 3.717 3 H 0.022 0.978 4 C -0.536 4.536 5 H 0.066 0.934 6 C 0.023 3.977 7 N -0.911 5.911 8 Si 0.953 3.047 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.276 1.276 12 N -1.094 6.094 13 S 2.704 3.296 14 O -0.974 6.974 15 O -0.977 6.977 16 C -0.728 4.728 17 C 0.017 3.983 18 C -0.173 4.173 19 C 0.162 3.838 20 N -0.512 5.512 21 C 0.252 3.748 22 Cl -0.014 7.014 23 H 0.073 0.927 24 H 0.039 0.961 25 H 0.032 0.968 26 H 0.265 0.735 27 H 0.418 0.582 28 H 0.175 0.825 29 H 0.201 0.799 30 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.721 5.212 7.171 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.178 3.822 3 H 0.040 0.960 4 C -0.575 4.575 5 H 0.084 0.916 6 C -0.178 4.178 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.856 5.856 13 S 2.791 3.209 14 O -0.964 6.964 15 O -0.967 6.967 16 C -0.817 4.817 17 C -0.009 4.009 18 C -0.193 4.193 19 C 0.006 3.994 20 N -0.224 5.224 21 C 0.086 3.914 22 Cl 0.015 6.985 23 H 0.091 0.909 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.253 0.747 28 H 0.192 0.808 29 H 0.218 0.782 30 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 8.049 4.955 7.614 12.137 hybrid contribution -0.023 -0.463 -1.205 1.291 sum 8.026 4.492 6.409 11.210 Atomic orbital electron populations 1.22138 0.98027 1.00202 1.00795 1.18242 0.91377 0.91187 0.81438 0.95998 1.21537 1.31801 1.13381 0.90785 0.91569 1.25568 0.95074 0.95649 1.01485 1.69968 1.36928 1.23603 1.24494 0.85693 0.78574 0.78959 0.78915 1.19567 1.20966 1.20128 1.55354 1.80599 1.18863 1.30748 1.01457 0.73464 0.73203 0.72780 1.93558 1.81369 1.61550 1.59950 1.93535 1.50807 1.68257 1.84056 1.31671 1.16870 1.11666 1.21487 1.21877 1.01352 0.89869 0.87842 1.22860 0.92588 1.04343 0.99520 1.23919 0.99246 0.88085 0.88100 1.67204 1.30730 1.08360 1.16120 1.21183 0.89595 0.88381 0.92276 1.98452 1.97680 1.06421 1.95948 0.90883 0.94220 0.94931 0.92548 0.74670 0.80768 0.78242 0.76492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.13 9.29 71.98 0.67 -6.46 16 2 C 0.28 13.27 2.77 44.25 0.12 13.40 16 3 H 0.02 1.11 7.76 -2.39 -0.02 1.09 16 4 C -0.54 -27.08 8.76 25.60 0.22 -26.86 16 5 H 0.07 3.26 7.81 -2.91 -0.02 3.24 16 6 C 0.02 1.17 5.30 84.65 0.45 1.62 16 7 N -0.91 -48.75 11.32 21.45 0.24 -48.51 16 8 Si 0.95 41.32 29.54 68.60 2.03 43.35 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 12 N -1.09 -43.84 5.24 -172.53 -0.90 -44.74 16 13 S 2.70 101.85 4.98 -56.49 -0.28 101.57 16 14 O -0.97 -38.06 16.54 -128.00 -2.12 -40.18 16 15 O -0.98 -39.57 16.43 -128.00 -2.10 -41.68 16 16 C -0.73 -25.03 5.65 22.39 0.13 -24.91 16 17 C 0.02 0.47 9.66 22.46 0.22 0.68 16 18 C -0.17 -3.44 10.11 22.36 0.23 -3.21 16 19 C 0.16 3.48 11.18 84.67 0.95 4.42 16 20 N -0.51 -15.79 10.34 -186.70 -1.93 -17.72 16 21 C 0.25 8.82 7.26 84.70 0.61 9.43 16 22 Cl -0.01 -0.49 26.66 -2.72 -0.07 -0.56 16 23 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 24 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.03 1.43 7.72 -2.39 -0.02 1.41 16 26 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 27 H 0.42 15.38 8.84 -96.75 -0.85 14.52 16 28 H 0.17 4.25 7.44 -2.91 -0.02 4.23 16 29 H 0.20 1.94 8.06 -2.91 -0.02 1.92 16 30 H 0.22 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -65.45 290.57 -1.21 -66.66 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.33 Total: 13.69 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 3.60 Total: -31.88 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -2.59 Total: -110.97 kcal Atomic # 8 Polarization: -77.63 SS G_CDS: -4.22 Total: -81.85 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 101.85 SS G_CDS: -0.28 Total: 101.57 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.07 Total: -0.56 kcal Total: -65.45 -1.21 -66.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392185.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.050 kcal (2) G-P(sol) polarization free energy of solvation -65.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds