Wall clock time and date at job start Tue Mar 31 2020 06:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00092 * 2 1 4 4 H 1.48496 * 109.47434 * 270.00225 * 3 2 1 5 5 H 1.48507 * 109.46758 * 30.00653 * 3 2 1 6 6 H 1.48504 * 109.47083 * 149.99939 * 3 2 1 7 7 C 1.37873 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00281 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00115 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47103 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47061 * 179.97438 * 10 9 7 12 12 S 1.65600 * 119.99943 * 164.99958 * 11 10 9 13 13 O 1.42096 * 106.40489 * 311.45847 * 12 11 10 14 14 O 1.42103 * 106.40187 * 178.53484 * 12 11 10 15 15 C 1.76206 * 107.21712 * 65.00163 * 12 11 10 16 16 C 1.38705 * 120.40425 * 89.99923 * 15 12 11 17 17 C 1.38565 * 118.43594 * 180.02562 * 16 15 12 18 18 C 1.38398 * 119.14885 * 359.97438 * 17 16 15 19 19 Cl 1.73605 * 119.63252 * 180.02562 * 18 17 16 20 20 N 1.31943 * 120.73083 * 359.97438 * 18 17 16 21 21 C 1.31905 * 121.70686 * 0.04743 * 20 18 17 22 22 H 0.97002 * 120.00007 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47086 * 59.99590 * 9 7 2 24 24 H 1.09004 * 109.46712 * 299.99587 * 9 7 2 25 25 H 1.08998 * 109.47071 * 59.99548 * 10 9 7 26 26 H 1.09004 * 109.47441 * 299.99682 * 10 9 7 27 27 H 0.96998 * 119.99988 * 344.99579 * 11 10 9 28 28 H 1.08001 * 120.78816 * 359.97438 * 16 15 12 29 29 H 1.08000 * 120.42478 * 179.72686 * 17 16 15 30 30 H 1.08007 * 119.60917 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0001 11 7 5.4865 -2.6365 -0.0001 12 16 6.3145 -4.0219 0.3709 13 8 5.7336 -4.5291 1.5644 14 8 7.6953 -3.7084 0.2508 15 6 5.9592 -5.1964 -0.8936 16 6 6.7567 -5.2715 -2.0261 17 6 6.4398 -6.2098 -2.9951 18 6 5.3460 -7.0355 -2.8019 19 17 4.9380 -8.2160 -4.0076 20 7 4.6106 -6.9360 -1.7110 21 6 4.8835 -6.0540 -0.7689 22 1 -0.4850 0.8401 0.0004 23 1 3.8746 -0.6808 0.8905 24 1 3.8752 -0.6797 -0.8895 25 1 3.6585 -3.1502 -0.8903 26 1 3.6579 -3.1506 0.8897 27 1 5.9715 -1.8251 -0.2176 28 1 7.6041 -4.6135 -2.1501 29 1 7.0363 -6.2930 -3.8916 30 1 4.2584 -6.0016 0.1103 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137663.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:49 Heat of formation + Delta-G solvation = -48.965467 kcal Electronic energy + Delta-G solvation = -18262.775155 eV Core-core repulsion = 15018.035293 eV Total energy + Delta-G solvation = -3244.739863 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.56935 -37.30817 -37.11718 -35.90801 -35.69049 -33.17162 -32.76233 -31.67860 -29.79702 -24.70040 -24.38781 -24.29253 -21.02655 -19.66076 -18.41907 -17.67507 -17.30580 -17.06276 -16.83366 -15.63329 -14.96954 -14.92510 -14.35119 -14.29388 -14.15117 -13.81260 -13.38934 -12.70351 -12.31459 -12.28505 -12.17345 -12.05028 -11.78754 -11.69215 -11.51736 -11.35936 -10.61386 -10.54952 -10.14688 -10.07782 -9.94784 -9.69222 -9.39732 -9.17864 -8.65231 -6.15377 -4.16163 -0.01197 0.38339 0.67887 1.30808 2.85533 3.15518 3.23006 3.31905 3.33107 3.67313 3.97613 4.04950 4.34568 4.34722 4.48213 4.76728 5.11951 5.18137 5.19582 5.35332 5.47774 5.90684 5.93474 6.13137 6.40148 7.02989 7.09928 7.14331 7.18133 7.62558 8.37232 8.87309 9.44864 10.97418 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.004427 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.291948 B = 6323.832785 C = 7318.536889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.527 4.527 8 H 0.076 0.924 9 C -0.017 4.017 10 C 0.123 3.877 11 N -1.111 6.111 12 S 2.701 3.299 13 O -0.948 6.948 14 O -0.963 6.963 15 C -0.733 4.733 16 C 0.040 3.960 17 C -0.179 4.179 18 C 0.222 3.778 19 Cl -0.019 7.019 20 N -0.488 5.488 21 C 0.225 3.775 22 H 0.265 0.735 23 H 0.027 0.973 24 H 0.019 0.981 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.418 0.582 28 H 0.163 0.837 29 H 0.156 0.844 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.769 -11.650 -6.414 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.566 4.566 8 H 0.094 0.906 9 C -0.056 4.056 10 C -0.001 4.001 11 N -0.873 5.873 12 S 2.786 3.214 13 O -0.938 6.938 14 O -0.953 6.953 15 C -0.819 4.819 16 C 0.014 3.986 17 C -0.200 4.200 18 C 0.058 3.942 19 Cl 0.009 6.991 20 N -0.200 5.200 21 C 0.066 3.934 22 H 0.075 0.925 23 H 0.045 0.955 24 H 0.038 0.962 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.253 0.747 28 H 0.181 0.819 29 H 0.174 0.826 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 14.269 -12.554 -5.695 19.840 hybrid contribution 0.742 1.373 -1.136 1.930 sum 15.011 -11.181 -6.831 19.925 Atomic orbital electron populations 1.69898 1.06304 1.27137 1.50190 1.24986 0.94742 0.99171 0.94260 0.86784 0.80416 0.83577 0.78521 1.20257 1.21228 1.18903 1.20935 0.88646 0.94918 1.52060 0.90565 1.19755 0.97732 0.90794 0.97327 1.21534 0.74812 1.02470 1.01324 1.55535 1.17710 1.25991 1.88072 1.01838 0.72891 0.72925 0.73714 1.93613 1.78592 1.80010 1.41584 1.93577 1.31156 1.83681 1.86879 1.32337 1.08241 1.21548 1.19771 1.21377 0.95169 0.93177 0.88904 1.21951 0.98454 0.97440 1.02186 1.22081 0.91152 0.90560 0.90391 1.98437 1.93619 1.55772 1.51243 1.67206 1.29430 1.21988 1.01329 1.22649 0.90581 0.85139 0.95003 0.92499 0.95451 0.96243 0.92379 0.90320 0.74713 0.81935 0.82634 0.79679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.54 27.47 -169.99 -4.67 15.88 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 7 C -0.53 -14.03 9.66 -34.44 -0.33 -14.36 16 8 H 0.08 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.02 -0.36 4.18 -27.88 -0.12 -0.48 16 10 C 0.12 2.12 6.16 -4.04 -0.02 2.09 16 11 N -1.11 -15.28 6.00 -10.61 -0.06 -15.35 16 12 S 2.70 35.44 5.75 -107.50 -0.62 34.82 16 13 O -0.95 -15.05 16.78 -57.17 -0.96 -16.01 16 14 O -0.96 -13.73 17.36 -57.17 -0.99 -14.72 16 15 C -0.73 -8.68 5.96 -39.44 -0.24 -8.91 16 16 C 0.04 0.40 9.65 -39.29 -0.38 0.02 16 17 C -0.18 -1.68 9.88 -39.40 -0.39 -2.07 16 18 C 0.22 2.57 7.27 -17.44 -0.13 2.44 16 19 Cl -0.02 -0.20 29.11 -51.86 -1.51 -1.71 16 20 N -0.49 -6.53 10.34 -10.36 -0.11 -6.64 16 21 C 0.22 2.85 10.68 -17.55 -0.19 2.66 16 22 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.03 0.59 7.20 -51.93 -0.37 0.21 16 24 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.08 1.37 7.75 -51.93 -0.40 0.97 16 27 H 0.42 5.03 8.65 -34.47 -0.30 4.73 16 28 H 0.16 1.20 7.71 -52.49 -0.40 0.79 16 29 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.19 2.11 7.63 -52.48 -0.40 1.71 16 LS Contribution 295.45 15.07 4.45 4.45 Total: -1.00 -33.03 295.45 -8.29 -41.32 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -2.70 Total: 0.52 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -1.89 Total: -16.73 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 0.60 Total: -47.81 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -1.95 Total: -30.73 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 16 Polarization: 35.44 SS G_CDS: -0.62 Total: 34.82 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.51 Total: -1.71 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.03 -8.29 -41.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137663.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.649 kcal (2) G-P(sol) polarization free energy of solvation -33.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds