Wall clock time and date at job start Tue Mar 31 2020 06:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00092 * 2 1 4 4 H 1.48496 * 109.47434 * 270.00225 * 3 2 1 5 5 H 1.48507 * 109.46758 * 30.00653 * 3 2 1 6 6 H 1.48504 * 109.47083 * 149.99939 * 3 2 1 7 7 C 1.37873 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00281 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00115 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47103 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47061 * 179.97438 * 10 9 7 12 12 S 1.65600 * 119.99943 * 164.99958 * 11 10 9 13 13 O 1.42096 * 106.40489 * 311.45847 * 12 11 10 14 14 O 1.42103 * 106.40187 * 178.53484 * 12 11 10 15 15 C 1.76206 * 107.21712 * 65.00163 * 12 11 10 16 16 C 1.38705 * 120.40425 * 89.99923 * 15 12 11 17 17 C 1.38565 * 118.43594 * 180.02562 * 16 15 12 18 18 C 1.38398 * 119.14885 * 359.97438 * 17 16 15 19 19 Cl 1.73605 * 119.63252 * 180.02562 * 18 17 16 20 20 N 1.31943 * 120.73083 * 359.97438 * 18 17 16 21 21 C 1.31905 * 121.70686 * 0.04743 * 20 18 17 22 22 H 0.97002 * 120.00007 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47086 * 59.99590 * 9 7 2 24 24 H 1.09004 * 109.46712 * 299.99587 * 9 7 2 25 25 H 1.08998 * 109.47071 * 59.99548 * 10 9 7 26 26 H 1.09004 * 109.47441 * 299.99682 * 10 9 7 27 27 H 0.96998 * 119.99988 * 344.99579 * 11 10 9 28 28 H 1.08001 * 120.78816 * 359.97438 * 16 15 12 29 29 H 1.08000 * 120.42478 * 179.72686 * 17 16 15 30 30 H 1.08007 * 119.60917 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0001 11 7 5.4865 -2.6365 -0.0001 12 16 6.3145 -4.0219 0.3709 13 8 5.7336 -4.5291 1.5644 14 8 7.6953 -3.7084 0.2508 15 6 5.9592 -5.1964 -0.8936 16 6 6.7567 -5.2715 -2.0261 17 6 6.4398 -6.2098 -2.9951 18 6 5.3460 -7.0355 -2.8019 19 17 4.9380 -8.2160 -4.0076 20 7 4.6106 -6.9360 -1.7110 21 6 4.8835 -6.0540 -0.7689 22 1 -0.4850 0.8401 0.0004 23 1 3.8746 -0.6808 0.8905 24 1 3.8752 -0.6797 -0.8895 25 1 3.6585 -3.1502 -0.8903 26 1 3.6579 -3.1506 0.8897 27 1 5.9715 -1.8251 -0.2176 28 1 7.6041 -4.6135 -2.1501 29 1 7.0363 -6.2930 -3.8916 30 1 4.2584 -6.0016 0.1103 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054137663.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:49 Heat of formation + Delta-G solvation = -74.634461 kcal Electronic energy + Delta-G solvation = -18263.888246 eV Core-core repulsion = 15018.035293 eV Total energy + Delta-G solvation = -3245.852954 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.43072 -38.44720 -37.92588 -37.10915 -37.03906 -34.70297 -34.02655 -32.53656 -31.51577 -26.41579 -25.27519 -25.16321 -22.70362 -20.75000 -19.43864 -18.95807 -18.55001 -18.16313 -18.05756 -16.85520 -16.24167 -15.83888 -15.77701 -15.60598 -15.54643 -14.61666 -14.58628 -14.32617 -13.59394 -13.43578 -13.33269 -13.24273 -13.15197 -13.05717 -12.61190 -12.44942 -12.21655 -11.80107 -11.78681 -11.44945 -11.41889 -10.98223 -10.75365 -10.53158 -10.40812 -8.26216 -6.31759 -0.93120 -0.64440 -0.13505 0.48617 1.40661 1.43614 1.54067 1.84955 2.19243 2.39434 2.64086 3.08791 3.10009 3.15512 3.59736 3.64088 3.85444 4.15202 4.35997 4.41631 4.48558 4.55629 4.67389 4.88177 5.10733 5.38799 5.47670 5.64406 6.07655 6.26753 6.28625 6.77064 7.33084 8.90046 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.004427 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.291948 B = 6323.832785 C = 7318.536889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.240 1.240 7 C -0.534 4.534 8 H 0.039 0.961 9 C -0.018 4.018 10 C 0.133 3.867 11 N -1.105 6.105 12 S 2.726 3.274 13 O -0.979 6.979 14 O -0.968 6.968 15 C -0.735 4.735 16 C 0.042 3.958 17 C -0.167 4.167 18 C 0.205 3.795 19 Cl -0.011 7.011 20 N -0.516 5.516 21 C 0.208 3.792 22 H 0.266 0.734 23 H 0.032 0.968 24 H 0.037 0.963 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.428 0.572 28 H 0.194 0.806 29 H 0.193 0.807 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.503 -11.006 -7.569 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.163 1.163 7 C -0.573 4.573 8 H 0.057 0.943 9 C -0.057 4.057 10 C 0.008 3.992 11 N -0.868 5.868 12 S 2.814 3.186 13 O -0.969 6.969 14 O -0.958 6.958 15 C -0.823 4.823 16 C 0.015 3.985 17 C -0.188 4.188 18 C 0.042 3.958 19 Cl 0.017 6.983 20 N -0.228 5.228 21 C 0.050 3.950 22 H 0.075 0.925 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.265 0.735 28 H 0.211 0.789 29 H 0.210 0.790 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 17.040 -11.903 -6.840 21.882 hybrid contribution -0.122 1.027 -0.835 1.329 sum 16.918 -10.876 -7.675 21.528 Atomic orbital electron populations 1.70066 1.08435 1.28192 1.52392 1.25985 0.95546 1.03553 0.94058 0.85681 0.79726 0.78135 0.79229 1.19033 1.21642 1.16329 1.21336 0.91626 0.93516 1.50784 0.94272 1.19700 0.94231 0.93691 0.98115 1.21180 0.76672 0.99885 1.01499 1.55295 1.16073 1.27177 1.88228 1.00909 0.72177 0.72390 0.73171 1.93576 1.79066 1.80406 1.43833 1.93566 1.31301 1.83903 1.87076 1.32062 1.08814 1.21201 1.20254 1.21835 0.95333 0.93380 0.87909 1.22356 0.97508 0.95846 1.03046 1.22449 0.91821 0.91305 0.90240 1.98437 1.93661 1.55534 1.50631 1.67161 1.30624 1.22717 1.02265 1.22731 0.91282 0.85721 0.95294 0.92526 0.94999 0.94512 0.91667 0.91078 0.73503 0.78939 0.78990 0.79715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.84 13.96 21.45 0.30 -57.54 16 2 C 0.01 0.32 5.47 84.65 0.46 0.78 16 3 Si 0.95 41.58 27.47 68.60 1.88 43.47 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 7 C -0.53 -28.74 9.66 25.60 0.25 -28.49 16 8 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 9 C -0.02 -0.76 4.18 29.85 0.12 -0.63 16 10 C 0.13 4.45 6.16 86.38 0.53 4.98 16 11 N -1.11 -28.09 6.00 -187.49 -1.12 -29.21 16 12 S 2.73 66.94 5.75 -56.49 -0.32 66.62 16 13 O -0.98 -30.50 16.78 -128.00 -2.15 -32.65 16 14 O -0.97 -25.10 17.36 -128.00 -2.22 -27.32 16 15 C -0.74 -16.13 5.96 22.36 0.13 -16.00 16 16 C 0.04 0.70 9.65 22.46 0.22 0.91 16 17 C -0.17 -2.61 9.88 22.39 0.22 -2.39 16 18 C 0.21 4.40 7.27 84.71 0.62 5.02 16 19 Cl -0.01 -0.21 29.11 -2.72 -0.08 -0.29 16 20 N -0.52 -13.51 10.34 -186.69 -1.93 -15.44 16 21 C 0.21 5.20 10.68 84.66 0.90 6.10 16 22 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 23 H 0.03 1.29 7.20 -2.39 -0.02 1.28 16 24 H 0.04 1.40 7.57 -2.38 -0.02 1.38 16 25 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.07 2.48 7.75 -2.38 -0.02 2.46 16 27 H 0.43 9.04 8.65 -96.75 -0.84 8.20 16 28 H 0.19 1.99 7.71 -2.91 -0.02 1.97 16 29 H 0.19 1.51 8.06 -2.91 -0.02 1.48 16 30 H 0.19 4.35 7.63 -2.91 -0.02 4.33 16 Total: -1.00 -71.68 295.45 -1.89 -73.57 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.29 Total: 8.51 kcal Atomic # 6 Polarization: -33.17 SS G_CDS: 3.46 Total: -29.71 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -2.76 Total: -102.19 kcal Atomic # 8 Polarization: -55.60 SS G_CDS: -4.37 Total: -59.97 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.88 Total: 43.47 kcal Atomic # 16 Polarization: 66.94 SS G_CDS: -0.32 Total: 66.62 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -0.08 Total: -0.29 kcal Total: -71.68 -1.89 -73.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137663.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.060 kcal (2) G-P(sol) polarization free energy of solvation -71.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds