Wall clock time and date at job start Tue Mar 31 2020 06:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47417 * 2 1 4 4 H 1.09000 * 109.47109 * 55.24625 * 3 2 1 5 5 C 1.50696 * 109.47318 * 175.24647 * 3 2 1 6 6 H 1.08002 * 119.99874 * 120.00222 * 5 3 2 7 7 C 1.37879 * 120.00060 * 299.99888 * 5 3 2 8 8 N 1.31516 * 120.00097 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99836 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47265 * 89.99921 * 9 7 5 11 11 H 1.48503 * 109.47083 * 209.99782 * 9 7 5 12 12 H 1.48497 * 109.46923 * 329.99606 * 9 7 5 13 13 N 1.46903 * 109.47238 * 295.24910 * 3 2 1 14 14 C 1.46898 * 111.00426 * 152.20540 * 13 3 2 15 15 H 1.09004 * 109.46976 * 327.46617 * 14 13 3 16 16 C 1.53005 * 109.46957 * 87.46251 * 14 13 3 17 17 C 1.50700 * 109.47367 * 207.46240 * 14 13 3 18 18 C 1.38229 * 119.99998 * 140.00107 * 17 14 13 19 19 C 1.38230 * 120.00224 * 179.97438 * 18 17 14 20 20 C 1.38235 * 120.00109 * 359.97438 * 19 18 17 21 21 C 1.50697 * 120.00577 * 180.02562 * 20 19 18 22 22 C 1.53000 * 109.47060 * 89.99867 * 21 20 19 23 23 C 1.53001 * 109.47271 * 175.00221 * 22 21 20 24 24 C 1.53001 * 109.47329 * 295.00450 * 22 21 20 25 25 C 1.38238 * 119.99580 * 0.27942 * 20 19 18 26 26 C 1.38231 * 119.99600 * 319.97860 * 17 14 13 27 27 H 1.09000 * 109.47038 * 298.01668 * 1 2 3 28 28 H 1.08995 * 109.46899 * 58.01873 * 1 2 3 29 29 H 1.08999 * 109.47126 * 178.02128 * 1 2 3 30 30 H 1.09008 * 109.47013 * 239.99918 * 2 1 3 31 31 H 1.09003 * 109.47301 * 120.00628 * 2 1 3 32 32 H 0.96997 * 119.99838 * 180.02562 * 8 7 5 33 33 H 1.00898 * 110.99820 * 28.25081 * 13 3 2 34 34 H 1.08999 * 109.46897 * 59.99903 * 16 14 13 35 35 H 1.08997 * 109.47121 * 180.02562 * 16 14 13 36 36 H 1.09003 * 109.46867 * 300.00406 * 16 14 13 37 37 H 1.08005 * 119.99984 * 359.97438 * 18 17 14 38 38 H 1.08004 * 120.00044 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.46974 * 330.00269 * 21 20 19 40 40 H 1.08990 * 109.47486 * 210.00307 * 21 20 19 41 41 H 1.08999 * 109.47148 * 55.00256 * 22 21 20 42 42 H 1.08999 * 109.47005 * 59.99948 * 23 22 21 43 43 H 1.09001 * 109.47104 * 180.02562 * 23 22 21 44 44 H 1.09000 * 109.46725 * 300.00432 * 23 22 21 45 45 H 1.08999 * 109.46847 * 299.99991 * 24 22 21 46 46 H 1.09001 * 109.46981 * 60.00087 * 24 22 21 47 47 H 1.09001 * 109.47215 * 179.97438 * 24 22 21 48 48 H 1.07998 * 119.99861 * 179.72742 * 25 20 19 49 49 H 1.07994 * 120.00619 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6089 1.9803 0.8443 5 6 3.5424 1.4440 0.1177 6 1 4.1445 1.8897 -0.6602 7 6 4.1483 0.8765 1.2186 8 7 5.4594 0.8775 1.3212 9 14 3.1068 0.1051 2.5638 10 1 2.8847 -1.3305 2.2560 11 1 3.8093 0.2291 3.8663 12 1 1.7984 0.8035 2.6387 13 7 1.6463 2.1011 -1.2527 14 6 1.5039 3.5508 -1.0631 15 1 1.1526 3.7521 -0.0511 16 6 2.8588 4.2287 -1.2770 17 6 0.5089 4.0920 -2.0572 18 6 -0.3968 5.0620 -1.6703 19 6 -1.3091 5.5589 -2.5822 20 6 -1.3154 5.0862 -3.8812 21 6 -2.3096 5.6282 -4.8756 22 6 -1.7071 6.8393 -5.5906 23 6 -2.6646 7.3134 -6.6858 24 6 -1.4859 7.9688 -4.5825 25 6 -0.4131 4.1124 -4.2667 26 6 0.5023 3.6188 -3.3560 27 1 -0.3633 0.4827 0.9072 28 1 -0.3633 0.5443 -0.8717 29 1 -0.3633 -1.0270 -0.0355 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 5.8856 0.4779 2.0955 33 1 0.7972 1.6994 -1.6210 34 1 3.2100 4.0273 -2.2890 35 1 2.7532 5.3043 -1.1359 36 1 3.5784 3.8371 -0.5580 37 1 -0.3916 5.4317 -0.6555 38 1 -2.0170 6.3165 -2.2798 39 1 -3.2180 5.9292 -4.3539 40 1 -2.5494 4.8567 -5.6071 41 1 -0.7533 6.5597 -6.0380 42 1 -3.6184 7.5930 -6.2384 43 1 -2.2352 8.1759 -7.1954 44 1 -2.8222 6.5087 -7.4039 45 1 -2.4397 8.2484 -4.1351 46 1 -0.8037 7.6311 -3.8024 47 1 -1.0563 8.8315 -5.0918 48 1 -0.4209 3.7399 -5.2804 49 1 1.2099 2.8610 -3.6582 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183062.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:30 Heat of formation + Delta-G solvation = 1.025112 kcal Electronic energy + Delta-G solvation = -23351.657832 eV Core-core repulsion = 20277.523992 eV Total energy + Delta-G solvation = -3074.133841 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.66584 -37.35806 -36.04409 -33.58152 -31.97331 -30.86356 -30.49462 -28.50757 -27.35397 -27.01103 -26.09636 -22.66274 -22.56936 -22.13907 -20.28944 -19.90296 -19.57239 -16.69098 -16.38030 -15.76334 -15.21948 -14.98792 -14.52951 -14.43924 -14.16370 -13.92316 -13.39548 -13.30442 -13.12857 -12.96719 -12.66182 -12.48046 -12.33844 -12.22764 -12.00051 -11.78315 -11.63381 -11.44535 -11.22277 -11.07817 -10.91812 -10.90611 -10.83780 -10.69139 -10.60606 -10.24785 -10.10387 -9.85015 -9.40513 -9.09366 -8.70583 -8.49106 -8.27216 -7.38353 -6.01491 -3.97451 1.52098 1.60763 3.26860 3.37629 3.39300 3.92403 4.42714 4.62826 4.66917 4.78252 4.92134 5.06237 5.15755 5.18074 5.26878 5.27483 5.37386 5.43873 5.48322 5.62374 5.69689 5.70459 5.71884 5.74472 5.83600 5.87689 5.90741 5.96148 5.98592 6.11299 6.13034 6.16675 6.25350 6.30419 6.42391 6.47491 6.58749 6.64113 6.70347 6.75324 6.76452 6.80576 6.95973 7.14950 7.22231 7.28224 7.75451 8.01964 8.29826 8.78944 9.11548 9.61992 11.11520 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.030744 B = 0.003317 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.515596 B = 8439.806995 C = 8782.425675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.136 4.136 3 C 0.189 3.811 4 H 0.002 0.998 5 C -0.491 4.491 6 H 0.086 0.914 7 C 0.065 3.935 8 N -0.901 5.901 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.668 5.668 14 C 0.132 3.868 15 H 0.043 0.957 16 C -0.133 4.133 17 C -0.080 4.080 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.091 4.091 21 C -0.073 4.073 22 C -0.092 4.092 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.121 4.121 26 C -0.098 4.098 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.262 0.738 33 H 0.321 0.679 34 H 0.052 0.948 35 H 0.036 0.964 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.050 0.950 48 H 0.116 0.884 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.379 10.339 -11.362 22.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.174 4.174 3 C 0.080 3.920 4 H 0.019 0.981 5 C -0.530 4.530 6 H 0.104 0.896 7 C -0.135 4.135 8 N -0.541 5.541 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.226 1.226 12 H -0.194 1.194 13 N -0.300 5.300 14 C 0.022 3.978 15 H 0.061 0.939 16 C -0.191 4.191 17 C -0.081 4.081 18 C -0.136 4.136 19 C -0.137 4.137 20 C -0.091 4.091 21 C -0.111 4.111 22 C -0.110 4.110 23 C -0.205 4.205 24 C -0.208 4.208 25 C -0.139 4.139 26 C -0.116 4.116 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.140 0.860 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.104 0.896 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.134 0.866 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.574 10.330 -11.475 21.930 hybrid contribution -1.286 -0.523 1.405 1.976 sum -16.860 9.807 -10.070 21.951 Atomic orbital electron populations 1.21910 0.98240 1.00488 1.00756 1.22145 0.92918 1.00589 1.01789 1.19717 0.96966 0.89169 0.86104 0.98084 1.21100 0.88941 1.36804 1.06141 0.89601 1.24968 0.94707 0.96090 0.97776 1.69882 1.08387 1.45904 1.29881 0.86980 0.80637 0.79834 0.81475 1.20685 1.22606 1.19400 1.60687 1.37027 1.00976 1.31299 1.20414 0.93588 0.89524 0.94291 0.93942 1.21848 0.96845 0.97242 1.03183 1.20301 0.96057 0.96365 0.95374 1.21045 0.95674 0.97414 0.99438 1.20897 0.99438 1.00269 0.93073 1.19750 0.97667 0.97224 0.94494 1.20636 0.96654 0.97090 0.96684 1.21082 0.99194 0.94995 0.95729 1.21855 0.99331 1.00999 0.98267 1.21918 1.01692 0.97768 0.99388 1.21013 0.96062 0.97487 0.99342 1.21126 0.98247 0.99643 0.92626 0.93689 0.93162 0.93613 0.91346 0.92840 0.92801 0.86007 0.92876 0.94481 0.89566 0.86505 0.86721 0.91387 0.91299 0.91078 0.92784 0.92744 0.92760 0.92956 0.91870 0.93042 0.86600 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.78 37.16 0.36 -2.35 16 2 C -0.14 -2.91 5.01 -26.73 -0.13 -3.04 16 3 C 0.19 4.36 1.63 -68.87 -0.11 4.24 16 4 H 0.00 0.04 6.41 -51.93 -0.33 -0.29 16 5 C -0.49 -13.48 8.01 -34.44 -0.28 -13.75 16 6 H 0.09 2.58 7.09 -52.49 -0.37 2.21 16 7 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 8 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 9 Si 0.88 21.86 24.41 -169.99 -4.15 17.71 16 10 H -0.28 -6.80 6.83 56.52 0.39 -6.41 16 11 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 13 N -0.67 -13.31 5.57 -102.17 -0.57 -13.88 16 14 C 0.13 2.40 2.83 -68.86 -0.19 2.21 16 15 H 0.04 0.82 7.21 -51.93 -0.37 0.44 16 16 C -0.13 -2.52 9.07 37.16 0.34 -2.18 16 17 C -0.08 -1.25 4.71 -104.63 -0.49 -1.74 16 18 C -0.12 -1.62 9.67 -39.59 -0.38 -2.00 16 19 C -0.12 -1.42 7.96 -39.59 -0.32 -1.74 16 20 C -0.09 -1.05 4.71 -104.62 -0.49 -1.54 16 21 C -0.07 -0.66 4.84 -27.88 -0.14 -0.80 16 22 C -0.09 -0.77 2.91 -90.62 -0.26 -1.03 16 23 C -0.15 -1.03 9.19 37.16 0.34 -0.68 16 24 C -0.15 -1.29 8.76 37.16 0.33 -0.96 16 25 C -0.12 -1.51 9.70 -39.58 -0.38 -1.89 16 26 C -0.10 -1.43 8.95 -39.58 -0.35 -1.78 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.80 6.37 -51.93 -0.33 0.47 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 31 H 0.05 1.23 3.21 -51.93 -0.17 1.06 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.32 5.84 5.58 -39.29 -0.22 5.62 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.91 6.07 -51.93 -0.32 1.60 16 37 H 0.12 1.50 8.04 -52.48 -0.42 1.08 16 38 H 0.11 1.16 8.04 -52.48 -0.42 0.74 16 39 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.63 6.27 -51.93 -0.33 0.30 16 47 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 49 H 0.13 1.99 7.72 -52.49 -0.41 1.58 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -29.09 371.70 -9.39 -38.49 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -8.78 Total: 6.00 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -2.27 Total: -27.28 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.20 Total: -40.51 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.15 Total: 17.71 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.09 -9.39 -38.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183062.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.512 kcal (2) G-P(sol) polarization free energy of solvation -29.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds