Wall clock time and date at job start Tue Mar 31 2020 06:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47417 * 2 1 4 4 H 1.09000 * 109.47109 * 55.24625 * 3 2 1 5 5 C 1.50696 * 109.47318 * 175.24647 * 3 2 1 6 6 H 1.08002 * 119.99874 * 120.00222 * 5 3 2 7 7 C 1.37879 * 120.00060 * 299.99888 * 5 3 2 8 8 N 1.31516 * 120.00097 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99836 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47265 * 89.99921 * 9 7 5 11 11 H 1.48503 * 109.47083 * 209.99782 * 9 7 5 12 12 H 1.48497 * 109.46923 * 329.99606 * 9 7 5 13 13 N 1.46903 * 109.47238 * 295.24910 * 3 2 1 14 14 C 1.46898 * 111.00426 * 152.20540 * 13 3 2 15 15 H 1.09004 * 109.46976 * 327.46617 * 14 13 3 16 16 C 1.53005 * 109.46957 * 87.46251 * 14 13 3 17 17 C 1.50700 * 109.47367 * 207.46240 * 14 13 3 18 18 C 1.38229 * 119.99998 * 140.00107 * 17 14 13 19 19 C 1.38230 * 120.00224 * 179.97438 * 18 17 14 20 20 C 1.38235 * 120.00109 * 359.97438 * 19 18 17 21 21 C 1.50697 * 120.00577 * 180.02562 * 20 19 18 22 22 C 1.53000 * 109.47060 * 89.99867 * 21 20 19 23 23 C 1.53001 * 109.47271 * 175.00221 * 22 21 20 24 24 C 1.53001 * 109.47329 * 295.00450 * 22 21 20 25 25 C 1.38238 * 119.99580 * 0.27942 * 20 19 18 26 26 C 1.38231 * 119.99600 * 319.97860 * 17 14 13 27 27 H 1.09000 * 109.47038 * 298.01668 * 1 2 3 28 28 H 1.08995 * 109.46899 * 58.01873 * 1 2 3 29 29 H 1.08999 * 109.47126 * 178.02128 * 1 2 3 30 30 H 1.09008 * 109.47013 * 239.99918 * 2 1 3 31 31 H 1.09003 * 109.47301 * 120.00628 * 2 1 3 32 32 H 0.96997 * 119.99838 * 180.02562 * 8 7 5 33 33 H 1.00898 * 110.99820 * 28.25081 * 13 3 2 34 34 H 1.08999 * 109.46897 * 59.99903 * 16 14 13 35 35 H 1.08997 * 109.47121 * 180.02562 * 16 14 13 36 36 H 1.09003 * 109.46867 * 300.00406 * 16 14 13 37 37 H 1.08005 * 119.99984 * 359.97438 * 18 17 14 38 38 H 1.08004 * 120.00044 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.46974 * 330.00269 * 21 20 19 40 40 H 1.08990 * 109.47486 * 210.00307 * 21 20 19 41 41 H 1.08999 * 109.47148 * 55.00256 * 22 21 20 42 42 H 1.08999 * 109.47005 * 59.99948 * 23 22 21 43 43 H 1.09001 * 109.47104 * 180.02562 * 23 22 21 44 44 H 1.09000 * 109.46725 * 300.00432 * 23 22 21 45 45 H 1.08999 * 109.46847 * 299.99991 * 24 22 21 46 46 H 1.09001 * 109.46981 * 60.00087 * 24 22 21 47 47 H 1.09001 * 109.47215 * 179.97438 * 24 22 21 48 48 H 1.07998 * 119.99861 * 179.72742 * 25 20 19 49 49 H 1.07994 * 120.00619 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6089 1.9803 0.8443 5 6 3.5424 1.4440 0.1177 6 1 4.1445 1.8897 -0.6602 7 6 4.1483 0.8765 1.2186 8 7 5.4594 0.8775 1.3212 9 14 3.1068 0.1051 2.5638 10 1 2.8847 -1.3305 2.2560 11 1 3.8093 0.2291 3.8663 12 1 1.7984 0.8035 2.6387 13 7 1.6463 2.1011 -1.2527 14 6 1.5039 3.5508 -1.0631 15 1 1.1526 3.7521 -0.0511 16 6 2.8588 4.2287 -1.2770 17 6 0.5089 4.0920 -2.0572 18 6 -0.3968 5.0620 -1.6703 19 6 -1.3091 5.5589 -2.5822 20 6 -1.3154 5.0862 -3.8812 21 6 -2.3096 5.6282 -4.8756 22 6 -1.7071 6.8393 -5.5906 23 6 -2.6646 7.3134 -6.6858 24 6 -1.4859 7.9688 -4.5825 25 6 -0.4131 4.1124 -4.2667 26 6 0.5023 3.6188 -3.3560 27 1 -0.3633 0.4827 0.9072 28 1 -0.3633 0.5443 -0.8717 29 1 -0.3633 -1.0270 -0.0355 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 5.8856 0.4779 2.0955 33 1 0.7972 1.6994 -1.6210 34 1 3.2100 4.0273 -2.2890 35 1 2.7532 5.3043 -1.1359 36 1 3.5784 3.8371 -0.5580 37 1 -0.3916 5.4317 -0.6555 38 1 -2.0170 6.3165 -2.2798 39 1 -3.2180 5.9292 -4.3539 40 1 -2.5494 4.8567 -5.6071 41 1 -0.7533 6.5597 -6.0380 42 1 -3.6184 7.5930 -6.2384 43 1 -2.2352 8.1759 -7.1954 44 1 -2.8222 6.5087 -7.4039 45 1 -2.4397 8.2484 -4.1351 46 1 -0.8037 7.6311 -3.8024 47 1 -1.0563 8.8315 -5.0918 48 1 -0.4209 3.7399 -5.2804 49 1 1.2099 2.8610 -3.6582 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183062.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:29 Heat of formation + Delta-G solvation = -14.297491 kcal Electronic energy + Delta-G solvation = -23352.322270 eV Core-core repulsion = 20277.523992 eV Total energy + Delta-G solvation = -3074.798279 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.73399 -38.74860 -37.08326 -35.03838 -34.00470 -31.91808 -31.58309 -29.98462 -28.89622 -27.96362 -27.08638 -24.42399 -23.66618 -23.32622 -21.62260 -21.12406 -20.73737 -18.78347 -17.58566 -17.14102 -16.40105 -16.25745 -15.79236 -15.53648 -15.39982 -15.11886 -14.85151 -14.61790 -14.31768 -14.17087 -14.12541 -13.73073 -13.63398 -13.28096 -13.00063 -12.96822 -12.83639 -12.78274 -12.61516 -12.45296 -12.41695 -12.13851 -11.96624 -11.78638 -11.66211 -11.59184 -11.45186 -11.38074 -11.18740 -11.11152 -10.62583 -9.72664 -9.33358 -9.07129 -8.23153 -6.22773 0.47691 0.58397 1.28278 1.33649 1.43007 2.33222 2.88955 3.08920 3.45261 3.80293 3.95213 3.99065 4.13939 4.15786 4.23381 4.25248 4.32796 4.39914 4.42362 4.46866 4.63270 4.65641 4.68882 4.82039 4.83101 4.85231 4.87887 4.92942 5.00657 5.03991 5.08051 5.10829 5.11682 5.14067 5.18833 5.21611 5.28464 5.37954 5.43068 5.47569 5.51420 5.54310 5.61892 5.73994 5.79406 5.81687 6.15002 6.20629 6.55104 6.84492 6.96077 7.40562 8.93595 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.030744 B = 0.003317 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.515596 B = 8439.806995 C = 8782.425675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C 0.195 3.805 4 H -0.008 1.008 5 C -0.487 4.487 6 H 0.044 0.956 7 C 0.007 3.993 8 N -0.952 5.952 9 Si 0.942 3.058 10 H -0.267 1.267 11 H -0.302 1.302 12 H -0.252 1.252 13 N -0.671 5.671 14 C 0.135 3.865 15 H 0.033 0.967 16 C -0.125 4.125 17 C -0.097 4.097 18 C -0.123 4.123 19 C -0.115 4.115 20 C -0.083 4.083 21 C -0.071 4.071 22 C -0.090 4.090 23 C -0.144 4.144 24 C -0.151 4.151 25 C -0.122 4.122 26 C -0.109 4.109 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.262 0.738 33 H 0.335 0.665 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.123 0.877 38 H 0.138 0.862 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.135 0.865 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.249 10.841 -12.271 26.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.086 3.914 4 H 0.010 0.990 5 C -0.526 4.526 6 H 0.062 0.938 7 C -0.189 4.189 8 N -0.593 5.593 9 Si 0.771 3.229 10 H -0.193 1.193 11 H -0.230 1.230 12 H -0.176 1.176 13 N -0.304 5.304 14 C 0.026 3.974 15 H 0.051 0.949 16 C -0.183 4.183 17 C -0.098 4.098 18 C -0.142 4.142 19 C -0.133 4.133 20 C -0.083 4.083 21 C -0.108 4.108 22 C -0.108 4.108 23 C -0.202 4.202 24 C -0.208 4.208 25 C -0.140 4.140 26 C -0.127 4.127 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.155 0.845 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.141 0.859 38 H 0.156 0.844 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.152 0.848 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.476 10.834 -12.409 25.508 hybrid contribution -0.058 -0.555 1.541 1.639 sum -19.534 10.280 -10.868 24.604 Atomic orbital electron populations 1.21827 0.94626 1.02491 1.01576 1.22036 0.96139 0.98395 1.00905 1.19492 0.93940 0.90904 0.87103 0.99033 1.21341 0.91338 1.35199 1.04727 0.93810 1.25761 0.95726 0.97020 1.00419 1.70042 1.10433 1.47889 1.30969 0.85948 0.79445 0.79600 0.77951 1.19322 1.23036 1.17601 1.60498 1.38059 1.02102 1.29781 1.20305 0.93810 0.88399 0.94908 0.94923 1.21721 0.96621 0.98502 1.01437 1.19994 0.96643 0.98082 0.95071 1.21161 0.95692 0.97054 1.00271 1.21151 0.99044 1.00193 0.92873 1.20079 0.97287 0.96042 0.94863 1.20690 0.96262 0.97489 0.96371 1.21057 0.99085 0.94684 0.96022 1.21824 0.99201 1.01271 0.97854 1.21919 1.01861 0.97948 0.99064 1.21219 0.95506 0.97507 0.99780 1.21067 0.98907 0.99948 0.92774 0.93452 0.91730 0.91088 0.91776 0.94222 0.92865 0.84508 0.93359 0.92386 0.93782 0.85941 0.84415 0.90129 0.90276 0.92165 0.92058 0.92494 0.92248 0.91923 0.93400 0.92758 0.84757 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 9.78 71.98 0.70 -3.98 16 2 C -0.14 -5.67 5.01 30.59 0.15 -5.51 16 3 C 0.19 9.06 1.63 44.17 0.07 9.13 16 4 H -0.01 -0.38 6.41 -2.39 -0.02 -0.39 16 5 C -0.49 -27.88 8.01 25.60 0.21 -27.68 16 6 H 0.04 2.81 7.09 -2.91 -0.02 2.79 16 7 C 0.01 0.40 5.45 84.65 0.46 0.86 16 8 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 9 Si 0.94 45.67 24.41 68.60 1.67 47.35 16 10 H -0.27 -12.31 6.83 99.48 0.68 -11.63 16 11 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 12 H -0.25 -11.39 6.53 99.48 0.65 -10.74 16 13 N -0.67 -27.06 5.57 -477.16 -2.66 -29.72 16 14 C 0.14 5.02 2.83 44.17 0.12 5.15 16 15 H 0.03 1.27 7.21 -2.38 -0.02 1.26 16 16 C -0.12 -4.95 9.07 71.98 0.65 -4.29 16 17 C -0.10 -2.95 4.71 -19.87 -0.09 -3.04 16 18 C -0.12 -3.20 9.67 22.27 0.22 -2.98 16 19 C -0.11 -2.43 7.96 22.27 0.18 -2.25 16 20 C -0.08 -1.66 4.71 -19.87 -0.09 -1.75 16 21 C -0.07 -1.03 4.84 29.85 0.14 -0.88 16 22 C -0.09 -1.26 2.91 -10.79 -0.03 -1.29 16 23 C -0.14 -1.56 9.19 71.98 0.66 -0.90 16 24 C -0.15 -2.19 8.76 71.98 0.63 -1.55 16 25 C -0.12 -2.79 9.70 22.27 0.22 -2.57 16 26 C -0.11 -3.06 8.95 22.27 0.20 -2.87 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.85 6.37 -2.39 -0.02 1.84 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 31 H 0.04 1.75 3.21 -2.39 -0.01 1.74 16 32 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.33 11.90 5.58 -89.70 -0.50 11.40 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.04 2.09 6.07 -2.39 -0.01 2.08 16 37 H 0.12 2.97 8.04 -2.91 -0.02 2.95 16 38 H 0.14 2.28 8.04 -2.91 -0.02 2.25 16 39 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 40 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.05 0.84 6.27 -2.39 -0.01 0.82 16 47 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 49 H 0.12 3.59 7.72 -2.91 -0.02 3.57 16 Total: -1.00 -65.59 371.70 4.03 -61.56 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.31 Total: 27.36 kcal Atomic # 6 Polarization: -50.82 SS G_CDS: 4.40 Total: -46.42 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -2.36 Total: -89.85 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.67 Total: 47.35 kcal Total: -65.59 4.03 -61.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183062.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.264 kcal (2) G-P(sol) polarization free energy of solvation -65.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds