Wall clock time and date at job start Tue Mar 31 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47110 * 2 1 4 4 H 1.09001 * 109.46530 * 305.05482 * 3 2 1 5 5 C 1.50698 * 109.47376 * 185.05611 * 3 2 1 6 6 H 1.07998 * 120.00148 * 240.00671 * 5 3 2 7 7 C 1.37883 * 119.99747 * 59.99437 * 5 3 2 8 8 N 1.31510 * 119.99944 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99715 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47240 * 60.00134 * 9 7 5 11 11 H 1.48493 * 109.47271 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46955 * 300.00359 * 9 7 5 13 13 N 1.46902 * 109.47046 * 65.05250 * 3 2 1 14 14 C 1.46897 * 110.99886 * 205.37779 * 13 3 2 15 15 H 1.08998 * 109.47530 * 326.17733 * 14 13 3 16 16 C 1.53002 * 109.46928 * 86.17470 * 14 13 3 17 17 C 1.50701 * 109.46975 * 206.17085 * 14 13 3 18 18 C 1.38240 * 119.99465 * 139.99768 * 17 14 13 19 19 C 1.38240 * 119.99689 * 179.97438 * 18 17 14 20 20 C 1.38232 * 119.99948 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.99880 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.47351 * 89.99786 * 21 20 19 23 23 C 1.53002 * 109.46899 * 174.99990 * 22 21 20 24 24 C 1.53000 * 109.46997 * 295.00068 * 22 21 20 25 25 C 1.38239 * 120.00105 * 0.26942 * 20 19 18 26 26 C 1.38227 * 120.00203 * 319.98143 * 17 14 13 27 27 H 1.09006 * 109.47103 * 183.86406 * 1 2 3 28 28 H 1.08997 * 109.47011 * 303.86148 * 1 2 3 29 29 H 1.09005 * 109.47252 * 63.86556 * 1 2 3 30 30 H 1.09000 * 109.46912 * 239.99620 * 2 1 3 31 31 H 1.08999 * 109.47101 * 119.99841 * 2 1 3 32 32 H 0.97009 * 119.99373 * 179.97438 * 8 7 5 33 33 H 1.00898 * 110.99856 * 81.42468 * 13 3 2 34 34 H 1.09001 * 109.47071 * 63.72646 * 16 14 13 35 35 H 1.09001 * 109.46890 * 183.72511 * 16 14 13 36 36 H 1.08997 * 109.47082 * 303.72549 * 16 14 13 37 37 H 1.08003 * 120.00320 * 359.97438 * 18 17 14 38 38 H 1.07999 * 119.99962 * 180.02562 * 19 18 17 39 39 H 1.09001 * 109.46833 * 329.99380 * 21 20 19 40 40 H 1.09004 * 109.46830 * 209.99929 * 21 20 19 41 41 H 1.08997 * 109.47019 * 54.99834 * 22 21 20 42 42 H 1.08997 * 109.46683 * 60.00228 * 23 22 21 43 43 H 1.09001 * 109.46881 * 180.02562 * 23 22 21 44 44 H 1.08992 * 109.46851 * 299.99959 * 23 22 21 45 45 H 1.08998 * 109.47498 * 59.99908 * 24 22 21 46 46 H 1.09001 * 109.46998 * 179.97438 * 24 22 21 47 47 H 1.09008 * 109.47016 * 300.00255 * 24 22 21 48 48 H 1.08002 * 119.99859 * 179.73165 * 25 20 19 49 49 H 1.07996 * 119.99989 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9817 -0.8413 5 6 3.5418 1.4444 -0.1252 6 1 4.1478 1.8887 0.6505 7 6 4.1422 0.8788 -1.2301 8 7 3.4042 0.3381 -2.1748 9 14 6.0037 0.8805 -1.3850 10 1 6.5965 0.1455 -0.2389 11 1 6.3954 0.2176 -2.6547 12 1 6.4991 2.2805 -1.3846 13 7 1.6525 2.0989 1.2558 14 6 1.5648 3.5551 1.0834 15 1 2.3161 3.8818 0.3645 16 6 0.1721 3.9248 0.5690 17 6 1.8077 4.2331 2.4072 18 6 2.5627 5.3898 2.4629 19 6 2.7851 6.0121 3.6771 20 6 2.2521 5.4781 4.8353 21 6 2.4940 6.1568 6.1589 22 6 1.3822 7.1747 6.4209 23 6 1.5580 7.7736 7.8178 24 6 1.4544 8.2893 5.3753 25 6 1.5013 4.3186 4.7802 26 6 1.2753 3.6987 3.5654 27 1 -0.3633 -1.0254 0.0693 28 1 -0.3633 0.5726 0.8533 29 1 -0.3634 0.4527 -0.9226 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8266 -0.0595 -2.9523 33 1 2.2906 1.8607 2.0002 34 1 -0.5743 3.6579 1.3173 35 1 0.1280 4.9970 0.3782 36 1 -0.0297 3.3827 -0.3549 37 1 2.9787 5.8073 1.5579 38 1 3.3745 6.9160 3.7207 39 1 3.4564 6.6681 6.1344 40 1 2.4989 5.4112 6.9540 41 1 0.4135 6.6791 6.3573 42 1 2.5267 8.2692 7.8813 43 1 0.7656 8.4985 8.0047 44 1 1.5065 6.9796 8.5627 45 1 1.3292 7.8626 4.3801 46 1 0.6620 9.0142 5.5617 47 1 2.4232 8.7849 5.4389 48 1 1.0886 3.8990 5.6857 49 1 0.6857 2.7950 3.5218 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183064.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:33 Heat of formation + Delta-G solvation = -13.225734 kcal Electronic energy + Delta-G solvation = -23291.271258 eV Core-core repulsion = 20216.519454 eV Total energy + Delta-G solvation = -3074.751804 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.55020 -37.11509 -35.78758 -33.47704 -31.59210 -30.71771 -30.30886 -28.72249 -27.31614 -26.28234 -25.81970 -22.95954 -22.47758 -21.88639 -20.14757 -19.68430 -19.31016 -16.73479 -16.06333 -15.52481 -15.07396 -14.80636 -14.50636 -14.41207 -13.95633 -13.58080 -13.40288 -13.12736 -13.02768 -12.72938 -12.53749 -12.38917 -12.09692 -11.95638 -11.71628 -11.62380 -11.42978 -11.24640 -11.09123 -10.96669 -10.91171 -10.85721 -10.75760 -10.63847 -10.57181 -10.21320 -10.04799 -9.56759 -9.47407 -9.03576 -8.60030 -8.35522 -8.16880 -7.25538 -5.98462 -4.11198 1.63208 1.71338 3.28685 3.33797 3.36662 4.02999 4.40448 4.68525 4.72376 4.82702 5.07850 5.15709 5.24010 5.26947 5.32609 5.36951 5.44104 5.52025 5.53185 5.66818 5.75398 5.77181 5.81612 5.92411 5.98569 6.02909 6.11154 6.15989 6.19742 6.30756 6.33296 6.41678 6.46409 6.53971 6.59421 6.72371 6.75073 6.82462 6.85365 7.05481 7.15906 7.20105 7.32832 7.47956 7.62040 7.79664 8.11260 8.18109 8.35821 8.68651 9.01919 9.56417 11.01523 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.003596 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.026250 B = 7783.955676 C = 8521.587893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.681 5.681 14 C 0.123 3.877 15 H 0.054 0.946 16 C -0.128 4.128 17 C -0.073 4.073 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.093 4.093 21 C -0.073 4.073 22 C -0.091 4.091 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.122 4.122 26 C -0.099 4.099 27 H 0.023 0.977 28 H 0.050 0.950 29 H 0.035 0.965 30 H 0.089 0.911 31 H 0.029 0.971 32 H 0.261 0.739 33 H 0.329 0.671 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.114 0.886 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.664 12.133 14.311 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.584 4.584 6 H 0.070 0.930 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.311 5.311 14 C 0.013 3.987 15 H 0.072 0.928 16 C -0.186 4.186 17 C -0.074 4.074 18 C -0.134 4.134 19 C -0.137 4.137 20 C -0.093 4.093 21 C -0.111 4.111 22 C -0.109 4.109 23 C -0.205 4.205 24 C -0.207 4.207 25 C -0.141 4.141 26 C -0.117 4.117 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.146 0.854 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.132 0.868 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.334 11.930 14.010 19.159 hybrid contribution 2.138 0.172 -0.292 2.164 sum -3.197 12.102 13.718 18.571 Atomic orbital electron populations 1.21714 0.99031 0.98396 1.00364 1.21489 0.92079 0.99271 1.01592 1.19163 0.92653 0.91187 0.86213 0.94872 1.21849 0.92833 1.38222 1.05500 0.92982 1.24919 0.97811 0.95005 0.95711 1.69869 1.34847 1.38250 1.09389 0.86738 0.86218 0.78185 0.77332 1.20297 1.21253 1.20424 1.61042 1.55236 1.04747 1.10100 1.20336 0.96853 0.89863 0.91626 0.92755 1.21736 0.96412 0.99218 1.01227 1.20224 0.96246 0.94994 0.95907 1.21079 0.98796 0.95837 0.97642 1.20895 1.00776 0.99821 0.92214 1.19722 0.98888 0.95864 0.94797 1.20633 0.98626 0.97504 0.94296 1.21077 0.99010 0.95943 0.94914 1.21855 1.01597 1.00649 0.96354 1.21917 1.01255 0.97944 0.99633 1.20981 0.99617 0.95732 0.97720 1.21077 0.99259 0.99841 0.91520 0.95754 0.93114 0.94597 0.89233 0.95203 0.92859 0.85378 0.92883 0.93842 0.92260 0.86448 0.86807 0.91397 0.91341 0.91147 0.92771 0.92800 0.92771 0.91854 0.93120 0.92939 0.86758 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.85 37.16 0.37 -2.45 16 2 C -0.11 -2.52 5.45 -26.73 -0.15 -2.66 16 3 C 0.22 5.24 1.77 -68.86 -0.12 5.12 16 4 H 0.03 0.89 7.19 -51.93 -0.37 0.52 16 5 C -0.54 -14.62 8.29 -34.44 -0.29 -14.91 16 6 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -24.94 11.29 55.43 0.63 -24.32 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.68 -13.96 4.85 -102.17 -0.50 -14.45 16 14 C 0.12 2.30 2.62 -68.86 -0.18 2.11 16 15 H 0.05 1.15 7.50 -51.93 -0.39 0.76 16 16 C -0.13 -2.16 9.40 37.16 0.35 -1.82 16 17 C -0.07 -1.20 4.71 -104.62 -0.49 -1.69 16 18 C -0.11 -1.74 9.67 -39.58 -0.38 -2.12 16 19 C -0.12 -1.57 7.96 -39.58 -0.32 -1.88 16 20 C -0.09 -1.15 4.71 -104.62 -0.49 -1.65 16 21 C -0.07 -0.72 4.84 -27.88 -0.13 -0.86 16 22 C -0.09 -0.81 2.91 -90.62 -0.26 -1.07 16 23 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 24 C -0.15 -1.35 8.76 37.16 0.33 -1.02 16 25 C -0.12 -1.62 9.70 -39.58 -0.38 -2.01 16 26 C -0.10 -1.49 8.98 -39.59 -0.36 -1.85 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.99 7.65 -51.93 -0.40 0.59 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 2.39 5.95 -51.93 -0.31 2.08 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.33 6.90 7.62 -39.29 -0.30 6.60 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 1.08 7.48 -51.93 -0.39 0.69 16 37 H 0.12 1.71 8.04 -52.48 -0.42 1.29 16 38 H 0.11 1.29 8.04 -52.49 -0.42 0.87 16 39 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.65 6.27 -51.93 -0.33 0.33 16 46 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.44 8.14 -51.92 -0.42 0.01 16 48 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 49 H 0.13 1.97 7.72 -52.49 -0.41 1.56 16 LS Contribution 384.41 15.07 5.79 5.79 Total: -1.00 -27.11 384.41 -10.55 -37.66 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -9.19 Total: 6.86 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: -2.27 Total: -27.74 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.13 Total: -38.77 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -27.11 -10.55 -37.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183064.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.430 kcal (2) G-P(sol) polarization free energy of solvation -27.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds