Wall clock time and date at job start Tue Mar 31 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47520 * 2 1 4 4 H 1.09007 * 109.46749 * 54.35742 * 3 2 1 5 5 C 1.50698 * 109.47548 * 174.35553 * 3 2 1 6 6 H 1.07996 * 120.00077 * 116.30092 * 5 3 2 7 7 C 1.37875 * 120.00153 * 296.30728 * 5 3 2 8 8 N 1.31516 * 120.00070 * 353.41473 * 7 5 3 9 9 Si 1.86795 * 120.00099 * 173.13973 * 7 5 3 10 10 H 1.48495 * 109.47202 * 270.27113 * 9 7 5 11 11 H 1.48497 * 109.47354 * 30.27655 * 9 7 5 12 12 H 1.48508 * 109.47127 * 150.27359 * 9 7 5 13 13 N 1.46897 * 109.47394 * 294.36087 * 3 2 1 14 14 C 1.46896 * 111.00327 * 154.22965 * 13 3 2 15 15 H 1.09002 * 109.46955 * 36.74055 * 14 13 3 16 16 C 1.53001 * 109.47239 * 276.73905 * 14 13 3 17 17 C 1.50700 * 109.47380 * 156.74051 * 14 13 3 18 18 C 1.38240 * 119.99879 * 39.72685 * 17 14 13 19 19 C 1.38231 * 119.99738 * 179.79311 * 18 17 14 20 20 C 1.38229 * 120.00428 * 0.45832 * 19 18 17 21 21 C 1.50700 * 120.00398 * 179.79309 * 20 19 18 22 22 C 1.52998 * 109.47182 * 269.98217 * 21 20 19 23 23 C 1.52999 * 109.47231 * 64.99647 * 22 21 20 24 24 C 1.52998 * 109.47392 * 184.99958 * 22 21 20 25 25 C 1.38237 * 119.99567 * 359.77500 * 20 19 18 26 26 C 1.38227 * 120.00005 * 220.00409 * 17 14 13 27 27 H 1.08998 * 109.47365 * 185.08443 * 1 2 3 28 28 H 1.08995 * 109.46925 * 305.08414 * 1 2 3 29 29 H 1.09003 * 109.47153 * 65.08028 * 1 2 3 30 30 H 1.09002 * 109.46800 * 240.00308 * 2 1 3 31 31 H 1.09001 * 109.47283 * 120.00787 * 2 1 3 32 32 H 0.97004 * 119.99732 * 354.92520 * 8 7 5 33 33 H 1.00901 * 111.00255 * 278.19119 * 13 3 2 34 34 H 1.09007 * 109.46627 * 65.20610 * 16 14 13 35 35 H 1.09005 * 109.47092 * 185.19945 * 16 14 13 36 36 H 1.08994 * 109.47051 * 305.20412 * 16 14 13 37 37 H 1.08001 * 119.99826 * 359.97438 * 18 17 14 38 38 H 1.08004 * 119.99967 * 180.25297 * 19 18 17 39 39 H 1.08995 * 109.47121 * 29.98246 * 21 20 19 40 40 H 1.09000 * 109.47224 * 149.98347 * 21 20 19 41 41 H 1.09005 * 109.46742 * 304.99747 * 22 21 20 42 42 H 1.08997 * 109.47233 * 300.00125 * 23 22 21 43 43 H 1.08998 * 109.46939 * 60.00681 * 23 22 21 44 44 H 1.09008 * 109.46920 * 179.97438 * 23 22 21 45 45 H 1.09005 * 109.46938 * 59.99775 * 24 22 21 46 46 H 1.08991 * 109.47489 * 179.97438 * 24 22 21 47 47 H 1.09004 * 109.46873 * 300.00404 * 24 22 21 48 48 H 1.08002 * 119.99974 * 179.97438 * 25 20 19 49 49 H 1.07996 * 120.00195 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9846 0.8352 5 6 3.5405 1.4448 0.1397 6 1 4.1566 1.8323 -0.6582 7 6 4.1269 0.9520 1.2862 8 7 3.3784 0.6005 2.3088 9 14 5.9840 0.7765 1.3842 10 1 6.3807 -0.5679 0.8942 11 1 6.6249 1.8190 0.5429 12 1 6.4230 0.9391 2.7936 13 7 1.6648 2.0946 -1.2616 14 6 1.5665 3.5505 -1.0928 15 1 2.3405 3.8895 -0.4043 16 6 0.1899 3.9067 -0.5281 17 6 1.7514 4.2247 -2.4279 18 6 1.1872 3.6749 -3.5639 19 6 1.3532 4.2956 -4.7878 20 6 2.0914 5.4609 -4.8773 21 6 2.2763 6.1351 -6.2124 22 6 3.5348 5.5888 -6.8896 23 6 3.3392 4.1054 -7.2088 24 6 3.7921 6.3599 -8.1858 25 6 2.6596 6.0080 -3.7421 26 6 2.4900 5.3897 -2.5175 27 1 -0.3634 -1.0236 0.0911 28 1 -0.3633 0.5907 0.8409 29 1 -0.3633 0.4330 -0.9320 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 2.4212 0.7560 2.2853 33 1 2.3135 1.8589 -1.9976 34 1 0.0921 3.4958 0.4769 35 1 0.0824 4.9908 -0.4893 36 1 -0.5855 3.4874 -1.1692 37 1 0.6142 2.7620 -3.4946 38 1 0.9090 3.8683 -5.6746 39 1 1.4094 5.9369 -6.8427 40 1 2.3804 7.2101 -6.0653 41 1 4.3876 5.7072 -6.2211 42 1 3.1559 3.5560 -6.2854 43 1 2.4865 3.9870 -7.8774 44 1 4.2357 3.7163 -7.6918 45 1 3.9315 7.4168 -7.9583 46 1 4.6888 5.9710 -8.6680 47 1 2.9392 6.2415 -8.8543 48 1 3.2367 6.9183 -3.8121 49 1 2.9342 5.8170 -1.6307 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:37 Heat of formation + Delta-G solvation = -17.160250 kcal Electronic energy + Delta-G solvation = -23414.914417 eV Core-core repulsion = 20339.991999 eV Total energy + Delta-G solvation = -3074.922417 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.59264 -37.21679 -35.94210 -33.70401 -31.54454 -30.72032 -30.47088 -28.78810 -27.28505 -26.30036 -25.38970 -23.06044 -22.61282 -21.88871 -20.22331 -19.79165 -19.54079 -17.11828 -16.17490 -15.57221 -15.24592 -14.72915 -14.41369 -14.09197 -13.84638 -13.72632 -13.60255 -13.19095 -13.03736 -12.80884 -12.67594 -12.35968 -12.17320 -12.08920 -11.98344 -11.77100 -11.57758 -11.19771 -11.07913 -10.98832 -10.89770 -10.78466 -10.70385 -10.63418 -10.45423 -10.21744 -10.14615 -9.78367 -9.64545 -8.87059 -8.63969 -8.32745 -8.21949 -7.28830 -6.32515 -4.10799 1.58776 1.67272 3.41901 3.43495 3.59517 3.98752 4.51252 4.68692 4.72244 4.84047 5.01453 5.15386 5.18765 5.25371 5.32439 5.34571 5.43835 5.50020 5.53973 5.68060 5.74289 5.77325 5.78343 5.89885 5.96880 5.98088 6.02333 6.18470 6.19710 6.21799 6.24883 6.27240 6.28832 6.38967 6.48268 6.52400 6.69065 6.73901 6.81538 6.88131 6.94649 6.99889 7.20855 7.28361 7.37125 7.58337 7.97911 8.08686 8.46267 8.62099 8.82584 9.61882 10.99402 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016110 B = 0.003929 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.659111 B = 7124.497994 C = 7898.127152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C 0.203 3.797 4 H 0.025 0.975 5 C -0.625 4.625 6 H 0.047 0.953 7 C 0.027 3.973 8 N -0.908 5.908 9 Si 1.062 2.938 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.285 1.285 13 N -0.675 5.675 14 C 0.124 3.876 15 H 0.053 0.947 16 C -0.129 4.129 17 C -0.074 4.074 18 C -0.099 4.099 19 C -0.120 4.120 20 C -0.092 4.092 21 C -0.073 4.073 22 C -0.092 4.092 23 C -0.151 4.151 24 C -0.147 4.147 25 C -0.121 4.121 26 C -0.114 4.114 27 H 0.028 0.972 28 H 0.037 0.963 29 H 0.052 0.948 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.273 0.727 33 H 0.331 0.669 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.114 0.886 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.368 10.188 -16.021 19.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.094 3.906 4 H 0.043 0.957 5 C -0.664 4.664 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.544 5.544 9 Si 0.891 3.109 10 H -0.214 1.214 11 H -0.217 1.217 12 H -0.211 1.211 13 N -0.305 5.305 14 C 0.014 3.986 15 H 0.071 0.929 16 C -0.186 4.186 17 C -0.074 4.074 18 C -0.117 4.117 19 C -0.138 4.138 20 C -0.092 4.092 21 C -0.110 4.110 22 C -0.110 4.110 23 C -0.208 4.208 24 C -0.204 4.204 25 C -0.139 4.139 26 C -0.132 4.132 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.148 0.852 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.147 0.853 38 H 0.133 0.867 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.132 0.868 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.824 9.537 -14.945 17.952 hybrid contribution -0.128 0.752 -0.839 1.134 sum -2.952 10.289 -15.784 19.072 Atomic orbital electron populations 1.21695 0.98295 0.98660 1.00821 1.21545 0.92834 0.99496 1.00935 1.19275 0.93753 0.90584 0.86943 0.95690 1.22657 0.92427 1.46386 1.04916 0.93469 1.25663 1.06479 0.93398 0.92277 1.70753 1.08130 1.44116 1.31388 0.83647 0.74970 0.76440 0.75835 1.21406 1.21707 1.21113 1.60958 1.54587 1.05155 1.09827 1.20308 0.97030 0.89702 0.91561 0.92861 1.21740 0.96630 0.99326 1.00953 1.20166 0.96437 0.94961 0.95848 1.21079 0.99189 0.99831 0.91610 1.20986 0.99769 0.95595 0.97467 1.19737 0.98616 0.96112 0.94710 1.20629 0.98010 0.99157 0.93189 1.21083 0.97753 0.95621 0.96568 1.21918 1.01214 0.95681 1.01981 1.21853 1.01446 0.99891 0.97225 1.20894 1.00618 1.00099 0.92316 1.21062 0.98846 0.95785 0.97520 0.95316 0.94371 0.92915 0.94022 0.91713 0.91576 0.85201 0.92665 0.93632 0.92551 0.85312 0.86685 0.91351 0.91435 0.91144 0.91757 0.92943 0.93029 0.92838 0.92740 0.92772 0.86774 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.75 37.16 0.36 -2.34 16 2 C -0.11 -2.53 5.29 -26.73 -0.14 -2.67 16 3 C 0.20 4.88 1.41 -68.87 -0.10 4.78 16 4 H 0.03 0.66 6.45 -51.92 -0.33 0.33 16 5 C -0.62 -16.94 8.26 -34.44 -0.28 -17.22 16 6 H 0.05 1.30 7.71 -52.49 -0.40 0.90 16 7 C 0.03 0.76 5.20 -17.82 -0.09 0.67 16 8 N -0.91 -26.62 12.76 55.43 0.71 -25.91 16 9 Si 1.06 25.07 29.91 -169.99 -5.08 19.99 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.68 -13.80 4.99 -102.17 -0.51 -14.31 16 14 C 0.12 2.32 2.64 -68.87 -0.18 2.14 16 15 H 0.05 1.15 7.54 -51.93 -0.39 0.75 16 16 C -0.13 -2.18 9.33 37.16 0.35 -1.84 16 17 C -0.07 -1.21 4.72 -104.63 -0.49 -1.70 16 18 C -0.10 -1.49 9.04 -39.58 -0.36 -1.84 16 19 C -0.12 -1.57 7.96 -39.59 -0.32 -1.88 16 20 C -0.09 -1.13 4.71 -104.63 -0.49 -1.63 16 21 C -0.07 -0.71 4.84 -27.88 -0.13 -0.84 16 22 C -0.09 -0.86 2.91 -90.62 -0.26 -1.13 16 23 C -0.15 -1.48 8.76 37.16 0.33 -1.15 16 24 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 25 C -0.12 -1.61 9.70 -39.58 -0.38 -1.99 16 26 C -0.11 -1.73 9.67 -39.59 -0.38 -2.11 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.99 7.91 -51.93 -0.41 0.58 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.67 6.14 -51.93 -0.32 1.35 16 32 H 0.27 7.96 6.16 -40.82 -0.25 7.71 16 33 H 0.33 6.97 7.70 -39.29 -0.30 6.66 16 34 H 0.05 1.00 7.39 -51.92 -0.38 0.62 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.13 1.95 7.71 -52.49 -0.40 1.55 16 38 H 0.12 1.29 8.04 -52.48 -0.42 0.87 16 39 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 40 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.73 6.27 -51.93 -0.33 0.41 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 49 H 0.12 1.73 8.04 -52.49 -0.42 1.30 16 LS Contribution 383.21 15.07 5.77 5.77 Total: -1.00 -28.05 383.21 -10.44 -38.49 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -9.08 Total: 7.54 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: -2.25 Total: -31.56 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.20 Total: -40.23 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.99 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.05 -10.44 -38.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.326 kcal (2) G-P(sol) polarization free energy of solvation -28.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds