Wall clock time and date at job start Tue Mar 31 2020 06:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47520 * 2 1 4 4 H 1.09007 * 109.46749 * 54.35742 * 3 2 1 5 5 C 1.50698 * 109.47548 * 174.35553 * 3 2 1 6 6 H 1.07996 * 120.00077 * 116.30092 * 5 3 2 7 7 C 1.37875 * 120.00153 * 296.30728 * 5 3 2 8 8 N 1.31516 * 120.00070 * 353.41473 * 7 5 3 9 9 Si 1.86795 * 120.00099 * 173.13973 * 7 5 3 10 10 H 1.48495 * 109.47202 * 270.27113 * 9 7 5 11 11 H 1.48497 * 109.47354 * 30.27655 * 9 7 5 12 12 H 1.48508 * 109.47127 * 150.27359 * 9 7 5 13 13 N 1.46897 * 109.47394 * 294.36087 * 3 2 1 14 14 C 1.46896 * 111.00327 * 154.22965 * 13 3 2 15 15 H 1.09002 * 109.46955 * 36.74055 * 14 13 3 16 16 C 1.53001 * 109.47239 * 276.73905 * 14 13 3 17 17 C 1.50700 * 109.47380 * 156.74051 * 14 13 3 18 18 C 1.38240 * 119.99879 * 39.72685 * 17 14 13 19 19 C 1.38231 * 119.99738 * 179.79311 * 18 17 14 20 20 C 1.38229 * 120.00428 * 0.45832 * 19 18 17 21 21 C 1.50700 * 120.00398 * 179.79309 * 20 19 18 22 22 C 1.52998 * 109.47182 * 269.98217 * 21 20 19 23 23 C 1.52999 * 109.47231 * 64.99647 * 22 21 20 24 24 C 1.52998 * 109.47392 * 184.99958 * 22 21 20 25 25 C 1.38237 * 119.99567 * 359.77500 * 20 19 18 26 26 C 1.38227 * 120.00005 * 220.00409 * 17 14 13 27 27 H 1.08998 * 109.47365 * 185.08443 * 1 2 3 28 28 H 1.08995 * 109.46925 * 305.08414 * 1 2 3 29 29 H 1.09003 * 109.47153 * 65.08028 * 1 2 3 30 30 H 1.09002 * 109.46800 * 240.00308 * 2 1 3 31 31 H 1.09001 * 109.47283 * 120.00787 * 2 1 3 32 32 H 0.97004 * 119.99732 * 354.92520 * 8 7 5 33 33 H 1.00901 * 111.00255 * 278.19119 * 13 3 2 34 34 H 1.09007 * 109.46627 * 65.20610 * 16 14 13 35 35 H 1.09005 * 109.47092 * 185.19945 * 16 14 13 36 36 H 1.08994 * 109.47051 * 305.20412 * 16 14 13 37 37 H 1.08001 * 119.99826 * 359.97438 * 18 17 14 38 38 H 1.08004 * 119.99967 * 180.25297 * 19 18 17 39 39 H 1.08995 * 109.47121 * 29.98246 * 21 20 19 40 40 H 1.09000 * 109.47224 * 149.98347 * 21 20 19 41 41 H 1.09005 * 109.46742 * 304.99747 * 22 21 20 42 42 H 1.08997 * 109.47233 * 300.00125 * 23 22 21 43 43 H 1.08998 * 109.46939 * 60.00681 * 23 22 21 44 44 H 1.09008 * 109.46920 * 179.97438 * 23 22 21 45 45 H 1.09005 * 109.46938 * 59.99775 * 24 22 21 46 46 H 1.08991 * 109.47489 * 179.97438 * 24 22 21 47 47 H 1.09004 * 109.46873 * 300.00404 * 24 22 21 48 48 H 1.08002 * 119.99974 * 179.97438 * 25 20 19 49 49 H 1.07996 * 120.00195 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9846 0.8352 5 6 3.5405 1.4448 0.1397 6 1 4.1566 1.8323 -0.6582 7 6 4.1269 0.9520 1.2862 8 7 3.3784 0.6005 2.3088 9 14 5.9840 0.7765 1.3842 10 1 6.3807 -0.5679 0.8942 11 1 6.6249 1.8190 0.5429 12 1 6.4230 0.9391 2.7936 13 7 1.6648 2.0946 -1.2616 14 6 1.5665 3.5505 -1.0928 15 1 2.3405 3.8895 -0.4043 16 6 0.1899 3.9067 -0.5281 17 6 1.7514 4.2247 -2.4279 18 6 1.1872 3.6749 -3.5639 19 6 1.3532 4.2956 -4.7878 20 6 2.0914 5.4609 -4.8773 21 6 2.2763 6.1351 -6.2124 22 6 3.5348 5.5888 -6.8896 23 6 3.3392 4.1054 -7.2088 24 6 3.7921 6.3599 -8.1858 25 6 2.6596 6.0080 -3.7421 26 6 2.4900 5.3897 -2.5175 27 1 -0.3634 -1.0236 0.0911 28 1 -0.3633 0.5907 0.8409 29 1 -0.3633 0.4330 -0.9320 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 2.4212 0.7560 2.2853 33 1 2.3135 1.8589 -1.9976 34 1 0.0921 3.4958 0.4769 35 1 0.0824 4.9908 -0.4893 36 1 -0.5855 3.4874 -1.1692 37 1 0.6142 2.7620 -3.4946 38 1 0.9090 3.8683 -5.6746 39 1 1.4094 5.9369 -6.8427 40 1 2.3804 7.2101 -6.0653 41 1 4.3876 5.7072 -6.2211 42 1 3.1559 3.5560 -6.2854 43 1 2.4865 3.9870 -7.8774 44 1 4.2357 3.7163 -7.6918 45 1 3.9315 7.4168 -7.9583 46 1 4.6888 5.9710 -8.6680 47 1 2.9392 6.2415 -8.8543 48 1 3.2367 6.9183 -3.8121 49 1 2.9342 5.8170 -1.6307 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:36 Heat of formation + Delta-G solvation = -29.420345 kcal Electronic energy + Delta-G solvation = -23415.446054 eV Core-core repulsion = 20339.991999 eV Total energy + Delta-G solvation = -3075.454055 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.72908 -38.67623 -37.12777 -35.27940 -33.44035 -31.86936 -31.70489 -30.28983 -27.98530 -27.56364 -27.05638 -24.94453 -23.75660 -23.14189 -21.58034 -21.22244 -20.70849 -19.15913 -17.41992 -16.88412 -16.41470 -15.83998 -15.72844 -15.51566 -15.26453 -15.13955 -14.90887 -14.62754 -14.24367 -14.17599 -13.99952 -13.88144 -13.48486 -13.14523 -13.00878 -12.97447 -12.79834 -12.62162 -12.52814 -12.50203 -12.32762 -12.02895 -11.94895 -11.87076 -11.72285 -11.61891 -11.58991 -11.47425 -11.25494 -10.86074 -10.47015 -9.74892 -9.35105 -9.15783 -8.51075 -6.34404 0.46285 0.56027 1.48299 1.55259 1.72627 2.53288 2.87210 3.16197 3.50824 3.78372 3.93949 3.95386 4.11288 4.15403 4.22059 4.38687 4.40775 4.44204 4.52793 4.56064 4.63751 4.65701 4.70562 4.80048 4.83495 4.84962 4.90758 4.96934 4.98632 5.01141 5.08916 5.09190 5.19185 5.21817 5.23477 5.26533 5.36378 5.40252 5.45816 5.47244 5.49561 5.57570 5.67126 5.77708 5.80179 5.96710 6.02656 6.18014 6.51798 6.57892 6.78186 7.46010 8.75770 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016110 B = 0.003929 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.659111 B = 7124.497994 C = 7898.127152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.210 3.790 4 H -0.002 1.002 5 C -0.633 4.633 6 H 0.037 0.963 7 C -0.020 4.020 8 N -0.929 5.929 9 Si 1.106 2.894 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.284 1.284 13 N -0.660 5.660 14 C 0.127 3.873 15 H 0.016 0.984 16 C -0.120 4.120 17 C -0.094 4.094 18 C -0.106 4.106 19 C -0.117 4.117 20 C -0.084 4.084 21 C -0.070 4.070 22 C -0.090 4.090 23 C -0.151 4.151 24 C -0.143 4.143 25 C -0.122 4.122 26 C -0.129 4.129 27 H 0.049 0.951 28 H 0.033 0.967 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.262 0.738 33 H 0.328 0.672 34 H 0.035 0.965 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.125 0.875 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.062 0.938 48 H 0.136 0.864 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.478 11.174 -18.700 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.101 3.899 4 H 0.016 0.984 5 C -0.672 4.672 6 H 0.055 0.945 7 C -0.220 4.220 8 N -0.566 5.566 9 Si 0.930 3.070 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.210 1.210 13 N -0.289 5.289 14 C 0.017 3.983 15 H 0.034 0.966 16 C -0.177 4.177 17 C -0.094 4.094 18 C -0.124 4.124 19 C -0.134 4.134 20 C -0.084 4.084 21 C -0.107 4.107 22 C -0.109 4.109 23 C -0.209 4.209 24 C -0.200 4.200 25 C -0.140 4.140 26 C -0.147 4.147 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.143 0.857 38 H 0.155 0.845 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.154 0.846 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.953 10.530 -17.640 20.755 hybrid contribution -0.100 0.511 -0.083 0.527 sum -3.052 11.041 -17.722 21.102 Atomic orbital electron populations 1.21556 0.95363 1.00066 1.01205 1.21403 0.95414 0.98146 0.99279 1.19069 0.92014 0.91245 0.87590 0.98426 1.22969 0.94122 1.45671 1.04430 0.94515 1.26940 1.10066 0.92963 0.92059 1.70858 1.07717 1.45826 1.32247 0.83061 0.70610 0.77318 0.76055 1.19981 1.20457 1.20973 1.60934 1.53675 1.06368 1.07898 1.20251 0.96798 0.88509 0.92712 0.96586 1.21653 0.95828 1.00459 0.99808 1.19954 0.98632 0.95956 0.94890 1.21077 0.99426 0.99921 0.92001 1.21221 0.99367 0.95550 0.97300 1.20085 0.96987 0.95547 0.95763 1.20685 0.98708 0.99631 0.91647 1.21058 0.97040 0.95560 0.97218 1.21922 1.01883 0.95787 1.01259 1.21816 1.01928 1.00006 0.96298 1.21149 1.00476 1.00656 0.91691 1.21141 0.99197 0.95886 0.98509 0.93219 0.94810 0.91774 0.94221 0.94657 0.92753 0.85572 0.94540 0.91842 0.91560 0.85727 0.84483 0.89973 0.90116 0.92408 0.93691 0.91739 0.92841 0.92117 0.92554 0.91915 0.84642 0.86920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.85 9.75 71.98 0.70 -4.15 16 2 C -0.10 -4.90 5.29 30.59 0.16 -4.74 16 3 C 0.21 10.48 1.41 44.17 0.06 10.54 16 4 H 0.00 -0.12 6.45 -2.38 -0.02 -0.13 16 5 C -0.63 -35.39 8.26 25.60 0.21 -35.18 16 6 H 0.04 2.08 7.71 -2.91 -0.02 2.06 16 7 C -0.02 -1.15 5.20 84.65 0.44 -0.71 16 8 N -0.93 -56.11 12.76 21.45 0.27 -55.84 16 9 Si 1.11 51.03 29.91 68.60 2.05 53.08 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 N -0.66 -27.67 4.99 -477.17 -2.38 -30.05 16 14 C 0.13 4.93 2.64 44.17 0.12 5.05 16 15 H 0.02 0.73 7.54 -2.39 -0.02 0.72 16 16 C -0.12 -4.13 9.33 71.98 0.67 -3.46 16 17 C -0.09 -3.10 4.72 -19.87 -0.09 -3.19 16 18 C -0.11 -3.10 9.04 22.27 0.20 -2.90 16 19 C -0.12 -2.80 7.96 22.27 0.18 -2.62 16 20 C -0.08 -1.87 4.71 -19.87 -0.09 -1.96 16 21 C -0.07 -1.12 4.84 29.85 0.14 -0.98 16 22 C -0.09 -1.45 2.91 -10.80 -0.03 -1.48 16 23 C -0.15 -2.61 8.76 71.98 0.63 -1.98 16 24 C -0.14 -1.76 9.19 71.98 0.66 -1.10 16 25 C -0.12 -3.03 9.70 22.27 0.22 -2.81 16 26 C -0.13 -3.91 9.67 22.27 0.22 -3.70 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 2.34 7.91 -2.39 -0.02 2.32 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.03 1.86 6.14 -2.39 -0.01 1.85 16 32 H 0.26 15.96 6.16 -92.71 -0.57 15.39 16 33 H 0.33 14.11 7.70 -89.69 -0.69 13.42 16 34 H 0.04 1.36 7.39 -2.38 -0.02 1.35 16 35 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.12 3.69 7.71 -2.91 -0.02 3.67 16 38 H 0.14 2.66 8.04 -2.91 -0.02 2.64 16 39 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 40 H 0.08 1.13 8.09 -2.39 -0.02 1.12 16 41 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.04 0.95 6.27 -2.39 -0.01 0.93 16 43 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 45 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 48 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 49 H 0.11 3.42 8.04 -2.91 -0.02 3.39 16 Total: -1.00 -61.77 383.21 4.73 -57.04 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.39 Total: 31.13 kcal Atomic # 6 Polarization: -59.76 SS G_CDS: 4.39 Total: -55.37 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -2.11 Total: -85.89 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal Total: -61.77 4.73 -57.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.622 kcal (2) G-P(sol) polarization free energy of solvation -61.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds