Wall clock time and date at job start Tue Mar 31 2020 06:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47211 * 2 1 4 4 H 1.08997 * 109.47365 * 182.32126 * 3 2 1 5 5 C 1.50702 * 109.46886 * 302.32089 * 3 2 1 6 6 H 1.07994 * 120.00657 * 115.71910 * 5 3 2 7 7 C 1.37883 * 119.99784 * 295.71685 * 5 3 2 8 8 N 1.31515 * 119.99905 * 353.89894 * 7 5 3 9 9 Si 1.86800 * 119.99735 * 173.61897 * 7 5 3 10 10 H 1.48506 * 109.46779 * 180.27670 * 9 7 5 11 11 H 1.48500 * 109.47261 * 300.27592 * 9 7 5 12 12 H 1.48497 * 109.47352 * 60.28145 * 9 7 5 13 13 N 1.46898 * 109.46847 * 62.31565 * 3 2 1 14 14 C 1.46898 * 110.99934 * 81.04829 * 13 3 2 15 15 H 1.09000 * 109.46976 * 329.17115 * 14 13 3 16 16 C 1.53009 * 109.47067 * 89.16421 * 14 13 3 17 17 C 1.50697 * 109.47353 * 209.16259 * 14 13 3 18 18 C 1.38233 * 120.00007 * 319.73227 * 17 14 13 19 19 C 1.38232 * 119.99894 * 179.78599 * 18 17 14 20 20 C 1.38235 * 120.00083 * 0.43469 * 19 18 17 21 21 C 1.50702 * 120.00294 * 179.83255 * 20 19 18 22 22 C 1.52996 * 109.47396 * 239.98358 * 21 20 19 23 23 C 1.53007 * 109.46908 * 359.97438 * 21 20 19 24 24 C 1.53001 * 109.47049 * 119.97934 * 21 20 19 25 25 C 1.38238 * 119.99850 * 359.81805 * 20 19 18 26 26 C 1.38230 * 119.99954 * 359.97432 * 25 20 19 27 27 H 1.09002 * 109.46810 * 65.15011 * 1 2 3 28 28 H 1.08993 * 109.46982 * 185.14457 * 1 2 3 29 29 H 1.08992 * 109.47130 * 305.14919 * 1 2 3 30 30 H 1.09003 * 109.47361 * 240.00052 * 2 1 3 31 31 H 1.08994 * 109.47500 * 119.99926 * 2 1 3 32 32 H 0.96993 * 120.00186 * 354.01988 * 8 7 5 33 33 H 1.00898 * 110.99683 * 205.00073 * 13 3 2 34 34 H 1.09004 * 109.46922 * 180.02562 * 16 14 13 35 35 H 1.08998 * 109.46779 * 299.99890 * 16 14 13 36 36 H 1.09002 * 109.46587 * 59.99950 * 16 14 13 37 37 H 1.07998 * 120.00244 * 359.97438 * 18 17 14 38 38 H 1.07998 * 120.00249 * 180.27129 * 19 18 17 39 39 H 1.09000 * 109.47241 * 59.99993 * 22 21 20 40 40 H 1.09003 * 109.47132 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.47069 * 299.99748 * 22 21 20 42 42 H 1.08992 * 109.47512 * 59.99598 * 23 21 20 43 43 H 1.08997 * 109.47111 * 180.02562 * 23 21 20 44 44 H 1.09009 * 109.46653 * 299.99537 * 23 21 20 45 45 H 1.08996 * 109.47045 * 60.00479 * 24 21 20 46 46 H 1.09003 * 109.47085 * 180.02562 * 24 21 20 47 47 H 1.09001 * 109.46968 * 300.00435 * 24 21 20 48 48 H 1.07999 * 119.99666 * 179.97438 * 25 20 19 49 49 H 1.08005 * 119.99877 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1292 1.4429 -0.0416 5 6 1.4913 2.1693 -1.2007 6 1 0.8190 3.0038 -1.0662 7 6 1.8475 1.7689 -2.4711 8 7 2.7569 0.8331 -2.6348 9 14 1.0327 2.5502 -3.9595 10 1 1.5822 1.9449 -5.1992 11 1 -0.4326 2.3158 -3.9016 12 1 1.3007 4.0107 -3.9609 13 7 1.5966 2.1186 1.2264 14 6 2.4705 1.7824 2.3583 15 1 2.8656 0.7752 2.2256 16 6 3.6287 2.7801 2.4225 17 6 1.6801 1.8472 3.6398 18 6 0.7589 2.8595 3.8332 19 6 0.0307 2.9164 5.0068 20 6 0.2303 1.9662 5.9908 21 6 -0.5608 2.0304 7.2718 22 6 0.3969 2.1776 8.4559 23 6 -1.5058 3.2329 7.2279 24 6 -1.3767 0.7460 7.4323 25 6 1.1554 0.9569 5.7995 26 6 1.8804 0.8975 4.6241 27 1 -0.3633 0.4319 -0.9325 28 1 -0.3633 -1.0235 0.0921 29 1 -0.3633 0.5916 0.8402 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.2392 0.4861 -1.8682 33 1 1.5480 3.1173 1.0914 34 1 4.2774 2.5303 3.2621 35 1 4.2004 2.7332 1.4956 36 1 3.2336 3.7873 2.5551 37 1 0.6057 3.6041 3.0661 38 1 -0.6922 3.7047 5.1561 39 1 0.9781 3.0926 8.3416 40 1 -0.1754 2.2244 9.3824 41 1 1.0702 1.3210 8.4872 42 1 -2.1881 3.1284 6.3844 43 1 -2.0777 3.2797 8.1547 44 1 -0.9244 4.1479 7.1137 45 1 -0.7034 -0.1105 7.4637 46 1 -1.9492 0.7926 8.3587 47 1 -2.0589 0.6412 6.5887 48 1 1.3116 0.2148 6.5685 49 1 2.6029 0.1088 4.4746 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183098.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:44 Heat of formation + Delta-G solvation = -6.491268 kcal Electronic energy + Delta-G solvation = -23652.001549 eV Core-core repulsion = 20577.541773 eV Total energy + Delta-G solvation = -3074.459776 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.85060 -37.56969 -35.92486 -33.58418 -31.15195 -30.89838 -29.48876 -28.04780 -27.45667 -27.38063 -25.33343 -23.54331 -23.38794 -22.05005 -20.74655 -19.22120 -18.87670 -17.19943 -16.30424 -15.22058 -14.92537 -14.40744 -14.33569 -14.27478 -13.85326 -13.71354 -13.49042 -13.25355 -13.16465 -12.88357 -12.65555 -12.44593 -12.23080 -12.04566 -11.99669 -11.83368 -11.55247 -11.42271 -11.19155 -11.02042 -10.95927 -10.84768 -10.76596 -10.38868 -10.35489 -10.15137 -10.09032 -9.83321 -9.66272 -8.62419 -8.47353 -8.37306 -8.18692 -7.35216 -6.33315 -4.04797 1.63771 1.70427 3.43626 3.46254 3.64133 4.01716 4.52518 4.55082 4.67063 4.88955 5.00580 5.19541 5.23684 5.27410 5.33303 5.40146 5.43734 5.46769 5.59871 5.61681 5.68513 5.71146 5.72662 5.74763 5.84286 5.90811 5.93792 6.05634 6.17157 6.17774 6.21123 6.29506 6.33447 6.36796 6.47957 6.49540 6.65168 6.75685 6.84096 6.98814 7.04092 7.11610 7.29219 7.32441 7.49510 7.58780 7.90725 8.13822 8.52630 8.59510 8.88220 9.65071 11.02792 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.026378 B = 0.003458 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.233357 B = 8095.592034 C = 8246.265663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.106 4.106 3 C 0.206 3.794 4 H -0.009 1.009 5 C -0.590 4.590 6 H 0.053 0.947 7 C 0.024 3.976 8 N -0.911 5.911 9 Si 1.063 2.937 10 H -0.284 1.284 11 H -0.287 1.287 12 H -0.290 1.290 13 N -0.669 5.669 14 C 0.116 3.884 15 H 0.076 0.924 16 C -0.171 4.171 17 C -0.053 4.053 18 C -0.093 4.093 19 C -0.124 4.124 20 C -0.085 4.085 21 C -0.027 4.027 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.138 4.138 25 C -0.118 4.118 26 C -0.120 4.120 27 H 0.055 0.945 28 H 0.014 0.986 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.017 0.983 32 H 0.270 0.730 33 H 0.333 0.667 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.113 0.887 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.211 2.553 19.732 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.145 4.145 3 C 0.098 3.902 4 H 0.008 0.992 5 C -0.628 4.628 6 H 0.071 0.929 7 C -0.181 4.181 8 N -0.548 5.548 9 Si 0.891 3.109 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.216 1.216 13 N -0.299 5.299 14 C 0.005 3.995 15 H 0.094 0.906 16 C -0.229 4.229 17 C -0.054 4.054 18 C -0.112 4.112 19 C -0.142 4.142 20 C -0.085 4.085 21 C -0.027 4.027 22 C -0.194 4.194 23 C -0.200 4.200 24 C -0.195 4.195 25 C -0.136 4.136 26 C -0.138 4.138 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.152 0.848 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.131 0.869 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.768 1.991 18.202 18.921 hybrid contribution 0.926 0.490 1.395 1.745 sum -3.842 2.481 19.597 20.123 Atomic orbital electron populations 1.21399 0.96500 0.97440 1.02145 1.21497 0.96386 0.98308 0.98275 1.19223 0.92641 0.91538 0.86772 0.99175 1.21916 1.31228 1.17966 0.91715 0.92903 1.25669 0.96213 0.95672 1.00520 1.70778 1.22559 1.26519 1.34904 0.83636 0.75861 0.75457 0.75903 1.20926 1.21401 1.21615 1.60658 1.50758 1.13566 1.04931 1.20476 0.90493 0.98932 0.89604 0.90562 1.22437 0.99119 0.99681 1.01704 1.19971 0.96333 0.94210 0.94844 1.20933 0.95426 0.98400 0.96396 1.21108 1.00174 0.99110 0.93764 1.19651 0.97587 0.95960 0.95347 1.19448 0.94596 0.96030 0.92667 1.21876 0.98840 1.01995 0.96678 1.21951 0.98971 0.97389 1.01697 1.21882 0.99706 0.96408 1.01489 1.20789 0.97044 0.98376 0.97379 1.20960 1.00148 0.98896 0.93801 0.92570 0.96649 0.92947 0.92228 0.96405 0.91859 0.84849 0.93031 0.92182 0.92703 0.86151 0.86253 0.92603 0.92686 0.92546 0.92186 0.92712 0.92338 0.92528 0.92696 0.92426 0.86898 0.86744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.46 37.16 0.35 -2.31 16 2 C -0.11 -2.52 5.44 -26.73 -0.15 -2.66 16 3 C 0.21 4.98 1.77 -68.86 -0.12 4.86 16 4 H -0.01 -0.24 6.84 -51.93 -0.36 -0.60 16 5 C -0.59 -15.78 7.24 -34.44 -0.25 -16.03 16 6 H 0.05 1.42 7.73 -52.49 -0.41 1.02 16 7 C 0.02 0.66 5.26 -17.82 -0.09 0.56 16 8 N -0.91 -26.70 12.84 55.43 0.71 -25.99 16 9 Si 1.06 24.81 29.91 -169.99 -5.08 19.72 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.67 -13.64 4.69 -102.17 -0.48 -14.12 16 14 C 0.12 2.03 2.57 -68.86 -0.18 1.86 16 15 H 0.08 1.43 6.69 -51.93 -0.35 1.08 16 16 C -0.17 -2.72 9.13 37.16 0.34 -2.38 16 17 C -0.05 -0.84 4.95 -104.63 -0.52 -1.36 16 18 C -0.09 -1.42 9.32 -39.59 -0.37 -1.79 16 19 C -0.12 -1.65 8.98 -39.58 -0.36 -2.01 16 20 C -0.09 -1.06 4.76 -104.62 -0.50 -1.56 16 21 C -0.03 -0.27 0.85 -155.66 -0.13 -0.40 16 22 C -0.14 -1.19 8.29 37.16 0.31 -0.89 16 23 C -0.14 -1.28 7.13 37.16 0.27 -1.01 16 24 C -0.14 -1.28 8.29 37.16 0.31 -0.97 16 25 C -0.12 -1.52 8.71 -39.58 -0.34 -1.87 16 26 C -0.12 -1.74 9.67 -39.59 -0.38 -2.12 16 27 H 0.06 1.37 7.35 -51.93 -0.38 0.98 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 1.17 7.52 -51.93 -0.39 0.78 16 30 H 0.06 1.55 6.24 -51.93 -0.32 1.22 16 31 H 0.02 0.39 7.16 -51.93 -0.37 0.02 16 32 H 0.27 7.90 6.08 -40.82 -0.25 7.66 16 33 H 0.33 6.76 7.58 -39.29 -0.30 6.47 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 1.05 7.70 -51.93 -0.40 0.65 16 36 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 37 H 0.12 1.83 7.40 -52.49 -0.39 1.44 16 38 H 0.12 1.39 5.90 -52.49 -0.31 1.08 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.49 7.39 -51.93 -0.38 0.10 16 42 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.51 7.52 -51.92 -0.39 0.12 16 45 H 0.06 0.52 7.39 -51.93 -0.38 0.14 16 46 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.11 1.24 7.10 -52.49 -0.37 0.87 16 49 H 0.11 1.53 8.04 -52.48 -0.42 1.11 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -28.39 374.81 -9.76 -38.15 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -8.74 Total: 6.66 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: -1.82 Total: -30.07 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.23 Total: -40.11 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.08 Total: 19.72 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.39 -9.76 -38.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183098.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.656 kcal (2) G-P(sol) polarization free energy of solvation -28.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds