Wall clock time and date at job start Tue Mar 31 2020 06:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47211 * 2 1 4 4 H 1.08997 * 109.47365 * 182.32126 * 3 2 1 5 5 C 1.50702 * 109.46886 * 302.32089 * 3 2 1 6 6 H 1.07994 * 120.00657 * 115.71910 * 5 3 2 7 7 C 1.37883 * 119.99784 * 295.71685 * 5 3 2 8 8 N 1.31515 * 119.99905 * 353.89894 * 7 5 3 9 9 Si 1.86800 * 119.99735 * 173.61897 * 7 5 3 10 10 H 1.48506 * 109.46779 * 180.27670 * 9 7 5 11 11 H 1.48500 * 109.47261 * 300.27592 * 9 7 5 12 12 H 1.48497 * 109.47352 * 60.28145 * 9 7 5 13 13 N 1.46898 * 109.46847 * 62.31565 * 3 2 1 14 14 C 1.46898 * 110.99934 * 81.04829 * 13 3 2 15 15 H 1.09000 * 109.46976 * 329.17115 * 14 13 3 16 16 C 1.53009 * 109.47067 * 89.16421 * 14 13 3 17 17 C 1.50697 * 109.47353 * 209.16259 * 14 13 3 18 18 C 1.38233 * 120.00007 * 319.73227 * 17 14 13 19 19 C 1.38232 * 119.99894 * 179.78599 * 18 17 14 20 20 C 1.38235 * 120.00083 * 0.43469 * 19 18 17 21 21 C 1.50702 * 120.00294 * 179.83255 * 20 19 18 22 22 C 1.52996 * 109.47396 * 239.98358 * 21 20 19 23 23 C 1.53007 * 109.46908 * 359.97438 * 21 20 19 24 24 C 1.53001 * 109.47049 * 119.97934 * 21 20 19 25 25 C 1.38238 * 119.99850 * 359.81805 * 20 19 18 26 26 C 1.38230 * 119.99954 * 359.97432 * 25 20 19 27 27 H 1.09002 * 109.46810 * 65.15011 * 1 2 3 28 28 H 1.08993 * 109.46982 * 185.14457 * 1 2 3 29 29 H 1.08992 * 109.47130 * 305.14919 * 1 2 3 30 30 H 1.09003 * 109.47361 * 240.00052 * 2 1 3 31 31 H 1.08994 * 109.47500 * 119.99926 * 2 1 3 32 32 H 0.96993 * 120.00186 * 354.01988 * 8 7 5 33 33 H 1.00898 * 110.99683 * 205.00073 * 13 3 2 34 34 H 1.09004 * 109.46922 * 180.02562 * 16 14 13 35 35 H 1.08998 * 109.46779 * 299.99890 * 16 14 13 36 36 H 1.09002 * 109.46587 * 59.99950 * 16 14 13 37 37 H 1.07998 * 120.00244 * 359.97438 * 18 17 14 38 38 H 1.07998 * 120.00249 * 180.27129 * 19 18 17 39 39 H 1.09000 * 109.47241 * 59.99993 * 22 21 20 40 40 H 1.09003 * 109.47132 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.47069 * 299.99748 * 22 21 20 42 42 H 1.08992 * 109.47512 * 59.99598 * 23 21 20 43 43 H 1.08997 * 109.47111 * 180.02562 * 23 21 20 44 44 H 1.09009 * 109.46653 * 299.99537 * 23 21 20 45 45 H 1.08996 * 109.47045 * 60.00479 * 24 21 20 46 46 H 1.09003 * 109.47085 * 180.02562 * 24 21 20 47 47 H 1.09001 * 109.46968 * 300.00435 * 24 21 20 48 48 H 1.07999 * 119.99666 * 179.97438 * 25 20 19 49 49 H 1.08005 * 119.99877 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1292 1.4429 -0.0416 5 6 1.4913 2.1693 -1.2007 6 1 0.8190 3.0038 -1.0662 7 6 1.8475 1.7689 -2.4711 8 7 2.7569 0.8331 -2.6348 9 14 1.0327 2.5502 -3.9595 10 1 1.5822 1.9449 -5.1992 11 1 -0.4326 2.3158 -3.9016 12 1 1.3007 4.0107 -3.9609 13 7 1.5966 2.1186 1.2264 14 6 2.4705 1.7824 2.3583 15 1 2.8656 0.7752 2.2256 16 6 3.6287 2.7801 2.4225 17 6 1.6801 1.8472 3.6398 18 6 0.7589 2.8595 3.8332 19 6 0.0307 2.9164 5.0068 20 6 0.2303 1.9662 5.9908 21 6 -0.5608 2.0304 7.2718 22 6 0.3969 2.1776 8.4559 23 6 -1.5058 3.2329 7.2279 24 6 -1.3767 0.7460 7.4323 25 6 1.1554 0.9569 5.7995 26 6 1.8804 0.8975 4.6241 27 1 -0.3633 0.4319 -0.9325 28 1 -0.3633 -1.0235 0.0921 29 1 -0.3633 0.5916 0.8402 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.2392 0.4861 -1.8682 33 1 1.5480 3.1173 1.0914 34 1 4.2774 2.5303 3.2621 35 1 4.2004 2.7332 1.4956 36 1 3.2336 3.7873 2.5551 37 1 0.6057 3.6041 3.0661 38 1 -0.6922 3.7047 5.1561 39 1 0.9781 3.0926 8.3416 40 1 -0.1754 2.2244 9.3824 41 1 1.0702 1.3210 8.4872 42 1 -2.1881 3.1284 6.3844 43 1 -2.0777 3.2797 8.1547 44 1 -0.9244 4.1479 7.1137 45 1 -0.7034 -0.1105 7.4637 46 1 -1.9492 0.7926 8.3587 47 1 -2.0589 0.6412 6.5887 48 1 1.3116 0.2148 6.5685 49 1 2.6029 0.1088 4.4746 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183098.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:43 Heat of formation + Delta-G solvation = -19.144609 kcal Electronic energy + Delta-G solvation = -23652.550239 eV Core-core repulsion = 20577.541773 eV Total energy + Delta-G solvation = -3075.008466 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.90373 -38.98423 -37.24424 -35.19365 -33.08319 -31.95978 -30.95432 -29.37208 -28.19562 -28.06002 -27.26060 -25.46986 -24.64176 -23.14178 -22.14265 -20.84381 -19.95240 -19.06568 -17.47208 -16.59599 -16.15494 -15.87642 -15.62533 -15.56740 -15.20154 -15.08813 -14.84358 -14.48392 -14.34811 -14.11841 -14.01673 -13.82906 -13.58111 -13.35597 -13.10473 -12.77847 -12.73360 -12.64368 -12.54410 -12.49377 -12.25327 -12.12260 -11.98103 -11.94968 -11.78465 -11.68629 -11.60276 -11.35403 -11.28667 -10.53172 -10.43391 -9.71283 -9.32988 -9.05785 -8.54014 -6.25548 0.53883 0.61331 1.54620 1.61370 1.80105 2.58868 2.91536 3.23356 3.52546 3.72462 3.87260 3.98135 4.11018 4.16909 4.20244 4.33203 4.34531 4.43396 4.44962 4.54713 4.62773 4.65812 4.70523 4.77256 4.82065 4.86965 4.89625 4.93343 5.04040 5.04754 5.06428 5.10343 5.11834 5.19520 5.22936 5.27215 5.32754 5.39024 5.41787 5.48224 5.52825 5.67316 5.68600 5.81437 5.83980 5.95566 6.14793 6.21814 6.52851 6.65272 6.84922 7.52598 8.82228 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.026378 B = 0.003458 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.233357 B = 8095.592034 C = 8246.265663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.100 4.100 3 C 0.213 3.787 4 H -0.040 1.040 5 C -0.593 4.593 6 H 0.049 0.951 7 C -0.024 4.024 8 N -0.936 5.936 9 Si 1.107 2.893 10 H -0.289 1.289 11 H -0.274 1.274 12 H -0.272 1.272 13 N -0.664 5.664 14 C 0.119 3.881 15 H 0.060 0.940 16 C -0.162 4.162 17 C -0.071 4.071 18 C -0.106 4.106 19 C -0.127 4.127 20 C -0.081 4.081 21 C -0.028 4.028 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.137 4.137 25 C -0.117 4.117 26 C -0.129 4.129 27 H 0.034 0.966 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.258 0.742 33 H 0.333 0.667 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.062 0.938 37 H 0.113 0.887 38 H 0.136 0.864 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.072 0.928 47 H 0.045 0.955 48 H 0.135 0.865 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.643 3.017 21.954 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.139 4.139 3 C 0.104 3.896 4 H -0.022 1.022 5 C -0.631 4.631 6 H 0.068 0.932 7 C -0.223 4.223 8 N -0.574 5.574 9 Si 0.930 3.070 10 H -0.214 1.214 11 H -0.200 1.200 12 H -0.198 1.198 13 N -0.294 5.294 14 C 0.009 3.991 15 H 0.078 0.922 16 C -0.221 4.221 17 C -0.072 4.072 18 C -0.125 4.125 19 C -0.145 4.145 20 C -0.081 4.081 21 C -0.028 4.028 22 C -0.192 4.192 23 C -0.200 4.200 24 C -0.194 4.194 25 C -0.135 4.135 26 C -0.147 4.147 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.151 0.849 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.132 0.868 38 H 0.153 0.847 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.065 0.935 48 H 0.152 0.848 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.202 2.464 20.456 21.517 hybrid contribution 1.366 0.342 0.837 1.638 sum -4.837 2.806 21.294 22.016 Atomic orbital electron populations 1.21265 0.95268 0.98712 1.01027 1.21384 0.97307 0.97728 0.97493 1.19004 0.90665 0.92089 0.87825 1.02224 1.22192 1.30475 1.17718 0.92723 0.93241 1.26956 0.96121 0.95557 1.03625 1.70888 1.23998 1.28162 1.34360 0.83059 0.75665 0.75588 0.72714 1.21435 1.19968 1.19752 1.60597 1.51438 1.13211 1.04115 1.20434 0.90880 0.98312 0.89465 0.92173 1.22329 0.98643 0.99761 1.01321 1.19794 0.97335 0.95664 0.94384 1.20967 0.95982 0.98331 0.97192 1.21322 1.00075 0.99834 0.93259 1.20027 0.97014 0.94953 0.96120 1.19528 0.94780 0.96836 0.91655 1.21863 0.98729 1.01818 0.96782 1.21955 0.98814 0.96896 1.02362 1.21881 0.99585 0.95991 1.01955 1.21042 0.96456 0.98845 0.97169 1.21110 1.00710 0.98740 0.94173 0.94641 0.94431 0.92649 0.94896 0.95195 0.93180 0.84916 0.91062 0.94366 0.91878 0.86849 0.84652 0.93077 0.91002 0.92415 0.92761 0.91085 0.92340 0.92459 0.90909 0.93541 0.84754 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.73 9.46 71.98 0.68 -4.05 16 2 C -0.10 -4.86 5.44 30.60 0.17 -4.69 16 3 C 0.21 10.59 1.77 44.17 0.08 10.67 16 4 H -0.04 -2.19 6.84 -2.39 -0.02 -2.20 16 5 C -0.59 -32.25 7.24 25.60 0.19 -32.06 16 6 H 0.05 2.68 7.73 -2.91 -0.02 2.66 16 7 C -0.02 -1.34 5.26 84.66 0.45 -0.89 16 8 N -0.94 -56.36 12.84 21.45 0.28 -56.08 16 9 Si 1.11 50.06 29.91 68.60 2.05 52.11 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 N -0.66 -27.52 4.69 -477.14 -2.24 -29.76 16 14 C 0.12 4.25 2.57 44.17 0.11 4.36 16 15 H 0.06 2.31 6.69 -2.39 -0.02 2.30 16 16 C -0.16 -5.22 9.13 71.99 0.66 -4.56 16 17 C -0.07 -2.23 4.95 -19.87 -0.10 -2.33 16 18 C -0.11 -3.16 9.32 22.27 0.21 -2.95 16 19 C -0.13 -3.20 8.98 22.27 0.20 -3.00 16 20 C -0.08 -1.84 4.76 -19.86 -0.09 -1.94 16 21 C -0.03 -0.47 0.85 -52.93 -0.05 -0.52 16 22 C -0.13 -1.93 8.29 71.98 0.60 -1.33 16 23 C -0.14 -2.16 7.13 71.98 0.51 -1.64 16 24 C -0.14 -2.15 8.29 71.98 0.60 -1.55 16 25 C -0.12 -2.78 8.71 22.27 0.19 -2.59 16 26 C -0.13 -3.59 9.67 22.27 0.22 -3.38 16 27 H 0.03 1.71 7.35 -2.39 -0.02 1.69 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 29 H 0.05 2.43 7.52 -2.39 -0.02 2.41 16 30 H 0.03 1.76 6.24 -2.39 -0.01 1.74 16 31 H 0.03 1.34 7.16 -2.39 -0.02 1.32 16 32 H 0.26 15.75 6.08 -92.71 -0.56 15.19 16 33 H 0.33 13.74 7.58 -89.70 -0.68 13.06 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.04 1.37 7.70 -2.39 -0.02 1.35 16 36 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 37 H 0.11 3.44 7.40 -2.91 -0.02 3.42 16 38 H 0.14 2.90 5.90 -2.91 -0.02 2.88 16 39 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 0.81 7.39 -2.39 -0.02 0.80 16 42 H 0.05 0.88 7.51 -2.39 -0.02 0.86 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 0.88 7.52 -2.38 -0.02 0.86 16 45 H 0.06 0.89 7.39 -2.39 -0.02 0.87 16 46 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.13 2.57 7.10 -2.91 -0.02 2.55 16 49 H 0.12 3.12 8.04 -2.91 -0.02 3.10 16 Total: -1.00 -61.37 374.81 5.13 -56.24 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.43 Total: 29.95 kcal Atomic # 6 Polarization: -57.08 SS G_CDS: 4.61 Total: -52.47 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -1.96 Total: -85.84 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 2.05 Total: 52.11 kcal Total: -61.37 5.13 -56.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183098.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.095 kcal (2) G-P(sol) polarization free energy of solvation -61.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds