Wall clock time and date at job start Tue Mar 31 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46980 * 2 1 4 4 H 1.08997 * 109.47017 * 174.27697 * 3 2 1 5 5 C 1.50704 * 109.46684 * 54.28288 * 3 2 1 6 6 H 1.08002 * 119.99778 * 239.99438 * 5 3 2 7 7 C 1.37871 * 120.00298 * 60.00079 * 5 3 2 8 8 N 1.31514 * 120.00261 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00325 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47018 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47045 * 119.99708 * 9 7 5 12 12 H 1.48496 * 109.47465 * 239.99728 * 9 7 5 13 13 N 1.46897 * 109.47559 * 294.28335 * 3 2 1 14 14 C 1.46904 * 110.99740 * 274.37852 * 13 3 2 15 15 H 1.09003 * 109.47152 * 36.01486 * 14 13 3 16 16 C 1.52996 * 109.47402 * 276.01273 * 14 13 3 17 17 C 1.50699 * 109.47182 * 156.01377 * 14 13 3 18 18 C 1.38235 * 119.99777 * 39.72138 * 17 14 13 19 19 C 1.38239 * 119.99780 * 179.81121 * 18 17 14 20 20 C 1.38238 * 119.99960 * 0.42312 * 19 18 17 21 21 C 1.50696 * 119.99764 * 179.78912 * 20 19 18 22 22 C 1.52998 * 109.47022 * 240.02341 * 21 20 19 23 23 C 1.52999 * 109.47342 * 0.02562 * 21 20 19 24 24 C 1.53000 * 109.47183 * 120.02400 * 21 20 19 25 25 C 1.38234 * 119.99936 * 359.81336 * 20 19 18 26 26 C 1.38231 * 120.00079 * 220.00557 * 17 14 13 27 27 H 1.08992 * 109.47466 * 58.84471 * 1 2 3 28 28 H 1.09001 * 109.47132 * 178.84411 * 1 2 3 29 29 H 1.08998 * 109.47171 * 298.84031 * 1 2 3 30 30 H 1.08998 * 109.47350 * 120.00627 * 2 1 3 31 31 H 1.09002 * 109.46849 * 240.00270 * 2 1 3 32 32 H 0.96993 * 120.00609 * 179.97438 * 8 7 5 33 33 H 1.00900 * 110.99695 * 38.33195 * 13 3 2 34 34 H 1.08992 * 109.47474 * 179.97438 * 16 14 13 35 35 H 1.09003 * 109.47141 * 300.00220 * 16 14 13 36 36 H 1.09008 * 109.46938 * 59.99818 * 16 14 13 37 37 H 1.07998 * 120.00068 * 0.02562 * 18 17 14 38 38 H 1.08000 * 120.00041 * 180.21134 * 19 18 17 39 39 H 1.08997 * 109.47488 * 60.00189 * 22 21 20 40 40 H 1.09005 * 109.47237 * 180.02562 * 22 21 20 41 41 H 1.09004 * 109.47028 * 299.99798 * 22 21 20 42 42 H 1.08991 * 109.47400 * 60.00057 * 23 21 20 43 43 H 1.09005 * 109.47080 * 180.02562 * 23 21 20 44 44 H 1.08997 * 109.46807 * 299.99590 * 23 21 20 45 45 H 1.09005 * 109.46841 * 59.99794 * 24 21 20 46 46 H 1.08997 * 109.47599 * 179.97438 * 24 21 20 47 47 H 1.08996 * 109.47270 * 300.00135 * 24 21 20 48 48 H 1.07996 * 119.99839 * 179.97438 * 25 20 19 49 49 H 1.08003 * 120.00201 * 359.97032 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1251 1.4442 0.1025 5 6 1.4253 2.1925 1.1536 6 1 0.8178 3.0658 0.9676 7 6 1.6385 1.7638 2.4465 8 7 2.3779 0.7001 2.6732 9 14 0.8773 2.6938 3.8765 10 1 0.0955 3.8452 3.3582 11 1 -0.0218 1.7868 4.6345 12 1 1.9521 3.1885 4.7738 13 7 1.6662 2.0941 -1.2624 14 6 2.6611 1.8238 -2.3089 15 1 3.0429 0.8093 -2.1941 16 6 3.8154 2.8202 -2.1849 17 6 2.0168 1.9676 -3.6637 18 6 1.1101 2.9855 -3.8932 19 6 0.5220 3.1198 -5.1370 20 6 0.8341 2.2309 -6.1487 21 6 0.1894 2.3745 -7.5032 22 6 -0.5974 1.1039 -7.8308 23 6 -0.7606 3.5738 -7.4914 24 6 1.2716 2.5916 -8.5627 25 6 1.7371 1.2101 -5.9177 26 6 2.3281 1.0782 -4.6750 27 1 -0.3634 0.5316 -0.8794 28 1 -0.3633 -1.0275 -0.0207 29 1 -0.3633 0.4957 0.9002 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.5283 0.3987 3.5827 33 1 0.7444 1.8089 -1.5574 34 1 4.5538 2.6194 -2.9611 35 1 3.4336 3.8347 -2.2998 36 1 4.2815 2.7162 -1.2050 37 1 0.8638 3.6779 -3.1018 38 1 -0.1838 3.9171 -5.3174 39 1 -1.3684 0.9491 -7.0761 40 1 -1.0633 1.2075 -8.8108 41 1 0.0795 0.2495 -7.8393 42 1 -0.2001 4.4790 -7.2581 43 1 -1.2272 3.6773 -8.4711 44 1 -1.5316 3.4190 -6.7367 45 1 1.9485 1.7372 -8.5711 46 1 0.8055 2.6950 -9.5425 47 1 1.8322 3.4968 -8.3294 48 1 1.9806 0.5154 -6.7079 49 1 3.0334 0.2804 -4.4944 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183106.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:54 Heat of formation + Delta-G solvation = -1.642313 kcal Electronic energy + Delta-G solvation = -23589.420611 eV Core-core repulsion = 20515.171101 eV Total energy + Delta-G solvation = -3074.249509 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.88836 -37.51784 -35.84525 -33.29929 -31.29055 -30.91648 -29.18493 -28.00200 -27.46645 -27.39560 -26.00626 -23.58042 -23.06867 -22.05779 -20.59568 -19.16537 -18.80209 -16.81716 -15.90711 -15.44526 -14.96979 -14.58399 -14.49000 -14.39389 -13.93821 -13.53036 -13.27512 -13.21334 -13.15802 -12.66843 -12.64196 -12.43150 -12.06270 -12.03102 -11.92119 -11.82972 -11.42734 -11.37166 -11.22431 -11.01581 -10.94161 -10.85685 -10.70322 -10.48792 -10.43614 -10.27040 -9.87694 -9.72859 -9.50317 -8.93237 -8.65624 -8.31507 -8.24862 -7.18789 -5.94663 -3.95654 1.58081 1.66550 3.32955 3.41280 3.46164 3.98540 4.46837 4.52898 4.65506 4.87555 5.07224 5.16751 5.21854 5.26662 5.36147 5.37453 5.43447 5.45177 5.60566 5.68745 5.71118 5.71575 5.83079 5.88657 5.90992 5.93492 6.05243 6.14698 6.15884 6.25276 6.28815 6.37477 6.40693 6.40814 6.53379 6.59608 6.70849 6.81074 6.83520 6.94219 6.98337 7.27229 7.32458 7.35433 7.53540 7.74287 7.93582 8.33063 8.59956 8.66830 9.10494 9.67940 11.12543 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.026788 B = 0.003398 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.979636 B = 8238.163983 C = 8337.100860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.034 0.966 5 C -0.485 4.485 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.676 5.676 14 C 0.120 3.880 15 H 0.041 0.959 16 C -0.129 4.129 17 C -0.077 4.077 18 C -0.097 4.097 19 C -0.124 4.124 20 C -0.083 4.083 21 C -0.028 4.028 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.137 4.137 25 C -0.119 4.119 26 C -0.117 4.117 27 H 0.029 0.971 28 H 0.021 0.979 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.009 0.991 32 H 0.258 0.742 33 H 0.328 0.672 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.114 0.886 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.796 1.732 -20.026 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.107 3.893 4 H 0.052 0.948 5 C -0.524 4.524 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.308 5.308 14 C 0.010 3.990 15 H 0.058 0.942 16 C -0.187 4.187 17 C -0.077 4.077 18 C -0.115 4.115 19 C -0.142 4.142 20 C -0.083 4.083 21 C -0.028 4.028 22 C -0.195 4.195 23 C -0.200 4.200 24 C -0.194 4.194 25 C -0.137 4.137 26 C -0.135 4.135 27 H 0.048 0.952 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.147 0.853 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.150 0.850 38 H 0.139 0.861 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.132 0.868 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.451 2.244 -19.689 19.967 hybrid contribution -0.512 -0.664 0.716 1.103 sum -2.963 1.579 -18.972 19.267 Atomic orbital electron populations 1.21553 0.97723 0.97953 1.01176 1.22101 0.95007 1.01249 1.00081 1.19236 0.96064 0.88512 0.85455 0.94807 1.21100 1.30219 1.11386 0.89680 0.92017 1.24908 0.95632 0.95185 0.98693 1.69891 1.39382 1.24164 1.20227 0.86543 0.78993 0.79916 0.82571 1.19776 1.21310 1.21254 1.60994 1.03469 1.63077 1.03278 1.20409 0.93704 0.97355 0.87577 0.94151 1.21730 0.96479 0.99355 1.01101 1.20190 0.96749 0.94989 0.95785 1.21150 0.95780 0.97890 0.96673 1.21164 1.00609 0.99425 0.93038 1.19697 0.97757 0.96036 0.94776 1.19456 0.95053 0.96004 0.92282 1.21883 0.99961 0.96530 1.01114 1.21953 0.99021 0.97419 1.01651 1.21878 0.98037 1.01970 0.97533 1.20814 0.97825 0.98302 0.96784 1.21025 1.00237 0.99165 0.93094 0.95213 0.96001 0.91557 0.89008 0.97210 0.93247 0.85284 0.93907 0.92426 0.92001 0.85011 0.86082 0.92452 0.92653 0.92531 0.92253 0.92686 0.92193 0.92541 0.92659 0.92531 0.86817 0.86596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.39 37.16 0.35 -2.40 16 2 C -0.14 -3.41 5.48 -26.73 -0.15 -3.56 16 3 C 0.22 5.25 2.14 -68.87 -0.15 5.10 16 4 H 0.03 0.92 7.04 -51.93 -0.37 0.55 16 5 C -0.48 -13.00 7.35 -34.44 -0.25 -13.26 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.53 5.23 -17.82 -0.09 1.43 16 8 N -0.90 -25.26 11.38 55.43 0.63 -24.63 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.68 -14.07 5.41 -102.17 -0.55 -14.62 16 14 C 0.12 2.17 2.62 -68.87 -0.18 1.99 16 15 H 0.04 0.78 7.00 -51.93 -0.36 0.41 16 16 C -0.13 -2.22 9.37 37.16 0.35 -1.88 16 17 C -0.08 -1.22 4.72 -104.63 -0.49 -1.71 16 18 C -0.10 -1.46 9.02 -39.58 -0.36 -1.82 16 19 C -0.12 -1.63 8.98 -39.58 -0.36 -1.98 16 20 C -0.08 -1.00 4.76 -104.63 -0.50 -1.50 16 21 C -0.03 -0.27 0.85 -155.66 -0.13 -0.40 16 22 C -0.14 -1.23 8.29 37.16 0.31 -0.92 16 23 C -0.14 -1.24 7.13 37.16 0.26 -0.98 16 24 C -0.14 -1.18 8.29 37.16 0.31 -0.87 16 25 C -0.12 -1.50 8.71 -39.58 -0.34 -1.84 16 26 C -0.12 -1.66 9.67 -39.58 -0.38 -2.05 16 27 H 0.03 0.59 6.42 -51.93 -0.33 0.26 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 1.57 7.05 -51.93 -0.37 1.20 16 30 H 0.09 2.42 6.24 -51.93 -0.32 2.10 16 31 H 0.01 0.21 7.41 -51.93 -0.38 -0.18 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.33 6.72 5.87 -39.29 -0.23 6.49 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 1.17 7.36 -51.92 -0.38 0.79 16 37 H 0.13 2.08 7.71 -52.49 -0.40 1.67 16 38 H 0.12 1.37 5.90 -52.49 -0.31 1.06 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.50 7.39 -51.93 -0.38 0.11 16 42 H 0.06 0.51 7.51 -51.93 -0.39 0.12 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.53 7.51 -51.93 -0.39 0.14 16 45 H 0.06 0.48 7.39 -51.93 -0.38 0.09 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.11 1.21 7.10 -52.49 -0.37 0.84 16 49 H 0.12 1.54 8.04 -52.48 -0.42 1.11 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -27.42 373.85 -9.85 -37.27 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -8.73 Total: 6.65 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: -1.81 Total: -26.63 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.08 Total: -39.25 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.42 -9.85 -37.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183106.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.628 kcal (2) G-P(sol) polarization free energy of solvation -27.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds