Wall clock time and date at job start Tue Mar 31 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47208 * 2 1 4 4 C 1.52997 * 109.47353 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47422 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47109 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.47077 * 304.99494 * 6 5 4 8 8 N 1.46904 * 109.47576 * 64.99634 * 6 5 4 9 9 C 1.46901 * 110.99879 * 207.35102 * 8 6 5 10 10 H 1.08996 * 109.47486 * 32.13696 * 9 8 6 11 11 C 1.50703 * 109.46509 * 272.13943 * 9 8 6 12 12 H 1.08001 * 120.00359 * 0.02562 * 11 9 8 13 13 C 1.37878 * 119.99530 * 179.97438 * 11 9 8 14 14 N 1.31511 * 120.00385 * 0.02562 * 13 11 9 15 15 Si 1.86810 * 119.99974 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46704 * 90.00553 * 15 13 11 17 17 H 1.48500 * 109.47128 * 210.00565 * 15 13 11 18 18 H 1.48500 * 109.46745 * 330.00383 * 15 13 11 19 19 C 1.52999 * 109.46890 * 152.14326 * 9 8 6 20 20 C 1.52995 * 109.46977 * 295.20517 * 19 9 8 21 21 C 1.50706 * 109.47151 * 185.00057 * 6 5 4 22 22 C 1.38236 * 119.99385 * 279.86515 * 21 6 5 23 23 C 1.38242 * 119.99316 * 180.02562 * 22 21 6 24 24 C 1.38232 * 120.00010 * 0.06178 * 23 22 21 25 25 C 1.38232 * 120.00148 * 0.02562 * 24 23 22 26 26 C 1.38229 * 120.00019 * 99.99683 * 21 6 5 27 27 H 1.08997 * 109.46960 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46734 * 299.99874 * 1 2 3 29 29 H 1.09000 * 109.46909 * 59.99877 * 1 2 3 30 30 H 1.09000 * 109.46734 * 240.00126 * 2 1 3 31 31 H 1.09000 * 109.46909 * 120.00122 * 2 1 3 32 32 H 1.09006 * 109.47088 * 59.99969 * 3 2 1 33 33 H 1.09000 * 109.47286 * 299.99892 * 3 2 1 34 34 H 1.08998 * 109.47330 * 59.99969 * 4 3 2 35 35 H 1.09003 * 109.47337 * 300.00439 * 4 3 2 36 36 H 1.08992 * 109.47242 * 59.99962 * 5 4 3 37 37 H 1.09000 * 109.46985 * 299.99821 * 5 4 3 38 38 H 1.00903 * 110.99442 * 331.29948 * 8 6 5 39 39 H 0.96998 * 120.00598 * 180.02562 * 14 13 11 40 40 H 1.08999 * 109.46987 * 55.21019 * 19 9 8 41 41 H 1.09000 * 109.46841 * 175.20219 * 19 9 8 42 42 H 1.08999 * 109.46897 * 178.06977 * 20 19 9 43 43 H 1.08996 * 109.47236 * 298.06918 * 20 19 9 44 44 H 1.08996 * 109.47116 * 58.06966 * 20 19 9 45 45 H 1.07992 * 120.00401 * 0.10440 * 22 21 6 46 46 H 1.08002 * 119.99280 * 180.34186 * 23 22 21 47 47 H 1.08005 * 119.99721 * 179.97438 * 24 23 22 48 48 H 1.08000 * 119.99455 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.00055 * 359.97438 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8850 0.0013 6 6 5.6101 2.8849 0.0013 7 1 5.9734 2.2951 0.8429 8 7 6.0999 2.3001 -1.2542 9 6 7.4238 1.6908 -1.0698 10 1 7.5048 1.2972 -0.0566 11 6 8.4909 2.7317 -1.2911 12 1 8.2133 3.7446 -1.5430 13 6 9.8215 2.3911 -1.1709 14 7 10.1595 1.1579 -0.8636 15 14 11.1444 3.6812 -1.4458 16 1 11.4563 4.3523 -0.1584 17 1 12.3696 3.0291 -1.9738 18 1 10.6586 4.6876 -2.4238 19 6 7.6057 0.5522 -2.0755 20 6 6.5982 -0.5594 -1.7750 21 6 6.1125 4.3003 0.1258 22 6 6.1495 5.1208 -0.9862 23 6 6.6108 6.4189 -0.8721 24 6 7.0363 6.8960 0.3536 25 6 7.0010 6.0749 1.4650 26 6 6.5388 4.7771 1.3512 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9338 0.9285 -0.8891 35 1 3.9331 0.9287 0.8908 36 1 3.7164 3.3985 0.8912 37 1 3.7171 3.3990 -0.8887 38 1 5.4413 1.6297 -1.6218 39 1 11.0956 0.9184 -0.7787 40 1 7.4406 0.9291 -3.0848 41 1 8.6181 0.1561 -1.9967 42 1 6.7047 -1.3552 -2.5122 43 1 6.7853 -0.9597 -0.7786 44 1 5.5870 -0.1552 -1.8202 45 1 5.8168 4.7481 -1.9436 46 1 6.6345 7.0617 -1.7397 47 1 7.3971 7.9101 0.4426 48 1 7.3338 6.4477 2.4225 49 1 6.5115 4.1355 2.2195 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183716.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:53 Heat of formation + Delta-G solvation = -8.194027 kcal Electronic energy + Delta-G solvation = -23937.897208 eV Core-core repulsion = 20863.363595 eV Total energy + Delta-G solvation = -3074.533613 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.99350 -36.99402 -35.63456 -33.68713 -31.66931 -30.98152 -30.25192 -29.45701 -27.40694 -25.86236 -23.78030 -22.72191 -21.91755 -21.48857 -20.82347 -19.54492 -19.47780 -16.40968 -16.03584 -15.78552 -14.96692 -14.88404 -14.62809 -14.25901 -13.90194 -13.58875 -13.47878 -13.32872 -12.82281 -12.71652 -12.51018 -12.33763 -12.12777 -11.77236 -11.68713 -11.60353 -11.32816 -11.10987 -10.90680 -10.85393 -10.76285 -10.71186 -10.58600 -10.42793 -10.31337 -10.05075 -9.80989 -9.60075 -9.54046 -9.00117 -8.27460 -8.21492 -7.92344 -7.22633 -5.88231 -3.89408 2.04842 2.11526 3.38183 3.44144 3.49681 4.44704 4.53534 4.74751 4.90308 5.05618 5.15156 5.27107 5.35404 5.43751 5.48343 5.52173 5.58273 5.64559 5.71432 5.74117 5.77605 5.89732 5.93327 6.02261 6.08697 6.13366 6.15384 6.17521 6.19750 6.25050 6.28293 6.36038 6.42499 6.51176 6.61882 6.65008 6.75769 6.85487 7.06828 7.10926 7.16164 7.22404 7.35973 7.57777 7.69767 7.83252 8.03590 8.35994 8.46488 8.81961 9.19404 9.74924 11.17717 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.005588 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.539082 B = 5009.729882 C = 6758.600312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.117 4.117 4 C -0.123 4.123 5 C -0.117 4.117 6 C 0.132 3.868 7 H 0.044 0.956 8 N -0.680 5.680 9 C 0.221 3.779 10 H 0.001 0.999 11 C -0.480 4.480 12 H 0.067 0.933 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.887 3.113 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.274 1.274 19 C -0.127 4.127 20 C -0.150 4.150 21 C -0.038 4.038 22 C -0.074 4.074 23 C -0.133 4.133 24 C -0.135 4.135 25 C -0.129 4.129 26 C -0.117 4.117 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.321 0.679 39 H 0.257 0.743 40 H 0.040 0.960 41 H 0.099 0.901 42 H 0.036 0.964 43 H 0.041 0.959 44 H 0.035 0.965 45 H 0.126 0.874 46 H 0.110 0.890 47 H 0.108 0.892 48 H 0.110 0.890 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.327 2.222 2.566 14.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.154 4.154 4 C -0.161 4.161 5 C -0.154 4.154 6 C 0.021 3.979 7 H 0.062 0.938 8 N -0.313 5.313 9 C 0.114 3.886 10 H 0.019 0.981 11 C -0.519 4.519 12 H 0.085 0.915 13 C -0.145 4.145 14 N -0.541 5.541 15 Si 0.716 3.284 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.199 1.199 19 C -0.166 4.166 20 C -0.207 4.207 21 C -0.039 4.039 22 C -0.092 4.092 23 C -0.151 4.151 24 C -0.153 4.153 25 C -0.147 4.147 26 C -0.136 4.136 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.141 0.859 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.117 0.883 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.143 0.857 46 H 0.129 0.871 47 H 0.126 0.874 48 H 0.128 0.872 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.911 2.691 2.347 14.362 hybrid contribution 0.889 -0.178 0.422 1.000 sum -13.022 2.513 2.769 13.549 Atomic orbital electron populations 1.21778 0.96238 1.01291 1.01618 1.21551 0.95471 0.97324 1.02066 1.21593 0.95673 0.96345 1.01802 1.21684 0.94935 0.97257 1.02226 1.21787 0.95091 0.96377 1.02187 1.20349 0.92122 0.92225 0.93205 0.93783 1.60738 1.05637 1.39221 1.25734 1.19211 0.84428 0.91506 0.93439 0.98099 1.21304 0.89558 0.96376 1.44661 0.91484 1.24915 0.98589 0.95113 0.95912 1.69865 1.16876 1.17248 1.50136 0.86650 0.81436 0.81956 0.78346 1.21009 1.21599 1.19935 1.21800 1.00954 0.95046 0.98797 1.21901 0.99197 0.99435 1.00200 1.19736 0.96578 0.94958 0.92640 1.20913 0.97457 0.92184 0.98638 1.21069 1.00668 0.96393 0.96936 1.20929 1.01748 0.99256 0.93413 1.20896 1.01228 0.94481 0.98113 1.20912 0.99830 0.95489 0.97364 0.93042 0.92947 0.92851 0.91987 0.92178 0.92314 0.92076 0.91640 0.92223 0.92025 0.91342 0.85877 0.93347 0.94152 0.88255 0.94513 0.93936 0.94630 0.85653 0.87146 0.87357 0.87216 0.87177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.93 16 2 C -0.13 -1.24 5.93 -26.73 -0.16 -1.40 16 3 C -0.12 -1.24 5.21 -26.74 -0.14 -1.38 16 4 C -0.12 -1.57 5.05 -26.73 -0.14 -1.70 16 5 C -0.12 -1.65 4.77 -26.73 -0.13 -1.78 16 6 C 0.13 2.37 2.25 -68.86 -0.15 2.21 16 7 H 0.04 0.87 7.21 -51.93 -0.37 0.50 16 8 N -0.68 -13.55 5.40 -102.16 -0.55 -14.10 16 9 C 0.22 5.33 2.04 -68.86 -0.14 5.19 16 10 H 0.00 0.04 7.35 -51.93 -0.38 -0.34 16 11 C -0.48 -13.00 8.09 -34.44 -0.28 -13.28 16 12 H 0.07 1.86 6.10 -52.49 -0.32 1.54 16 13 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 14 N -0.90 -25.77 11.29 55.43 0.63 -25.15 16 15 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 16 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 18 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 19 C -0.13 -2.94 5.34 -26.73 -0.14 -3.08 16 20 C -0.15 -2.83 9.78 37.15 0.36 -2.46 16 21 C -0.04 -0.72 3.99 -104.62 -0.42 -1.14 16 22 C -0.07 -1.37 7.92 -39.58 -0.31 -1.68 16 23 C -0.13 -2.28 10.05 -39.58 -0.40 -2.68 16 24 C -0.14 -2.23 10.05 -39.59 -0.40 -2.63 16 25 C -0.13 -2.17 10.05 -39.59 -0.40 -2.56 16 26 C -0.12 -2.12 9.67 -39.59 -0.38 -2.50 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.88 5.77 -51.93 -0.30 0.58 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.32 5.83 4.24 -39.29 -0.17 5.67 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.10 2.61 5.96 -51.93 -0.31 2.30 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.03 0.59 5.71 -51.93 -0.30 0.30 16 45 H 0.13 2.34 7.71 -52.49 -0.40 1.94 16 46 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 47 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 48 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 49 H 0.11 1.84 8.04 -52.49 -0.42 1.42 16 LS Contribution 379.36 15.07 5.72 5.72 Total: -1.00 -28.37 379.36 -11.05 -39.42 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -8.87 Total: 7.37 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: -2.95 Total: -30.39 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.07 Total: -39.24 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.37 -11.05 -39.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183716.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.225 kcal (2) G-P(sol) polarization free energy of solvation -28.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds