Wall clock time and date at job start Tue Mar 31 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47208 * 2 1 4 4 C 1.52997 * 109.47353 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47422 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47109 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.47077 * 304.99494 * 6 5 4 8 8 N 1.46904 * 109.47576 * 64.99634 * 6 5 4 9 9 C 1.46901 * 110.99879 * 207.35102 * 8 6 5 10 10 H 1.08996 * 109.47486 * 32.13696 * 9 8 6 11 11 C 1.50703 * 109.46509 * 272.13943 * 9 8 6 12 12 H 1.08001 * 120.00359 * 0.02562 * 11 9 8 13 13 C 1.37878 * 119.99530 * 179.97438 * 11 9 8 14 14 N 1.31511 * 120.00385 * 0.02562 * 13 11 9 15 15 Si 1.86810 * 119.99974 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46704 * 90.00553 * 15 13 11 17 17 H 1.48500 * 109.47128 * 210.00565 * 15 13 11 18 18 H 1.48500 * 109.46745 * 330.00383 * 15 13 11 19 19 C 1.52999 * 109.46890 * 152.14326 * 9 8 6 20 20 C 1.52995 * 109.46977 * 295.20517 * 19 9 8 21 21 C 1.50706 * 109.47151 * 185.00057 * 6 5 4 22 22 C 1.38236 * 119.99385 * 279.86515 * 21 6 5 23 23 C 1.38242 * 119.99316 * 180.02562 * 22 21 6 24 24 C 1.38232 * 120.00010 * 0.06178 * 23 22 21 25 25 C 1.38232 * 120.00148 * 0.02562 * 24 23 22 26 26 C 1.38229 * 120.00019 * 99.99683 * 21 6 5 27 27 H 1.08997 * 109.46960 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46734 * 299.99874 * 1 2 3 29 29 H 1.09000 * 109.46909 * 59.99877 * 1 2 3 30 30 H 1.09000 * 109.46734 * 240.00126 * 2 1 3 31 31 H 1.09000 * 109.46909 * 120.00122 * 2 1 3 32 32 H 1.09006 * 109.47088 * 59.99969 * 3 2 1 33 33 H 1.09000 * 109.47286 * 299.99892 * 3 2 1 34 34 H 1.08998 * 109.47330 * 59.99969 * 4 3 2 35 35 H 1.09003 * 109.47337 * 300.00439 * 4 3 2 36 36 H 1.08992 * 109.47242 * 59.99962 * 5 4 3 37 37 H 1.09000 * 109.46985 * 299.99821 * 5 4 3 38 38 H 1.00903 * 110.99442 * 331.29948 * 8 6 5 39 39 H 0.96998 * 120.00598 * 180.02562 * 14 13 11 40 40 H 1.08999 * 109.46987 * 55.21019 * 19 9 8 41 41 H 1.09000 * 109.46841 * 175.20219 * 19 9 8 42 42 H 1.08999 * 109.46897 * 178.06977 * 20 19 9 43 43 H 1.08996 * 109.47236 * 298.06918 * 20 19 9 44 44 H 1.08996 * 109.47116 * 58.06966 * 20 19 9 45 45 H 1.07992 * 120.00401 * 0.10440 * 22 21 6 46 46 H 1.08002 * 119.99280 * 180.34186 * 23 22 21 47 47 H 1.08005 * 119.99721 * 179.97438 * 24 23 22 48 48 H 1.08000 * 119.99455 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.00055 * 359.97438 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8850 0.0013 6 6 5.6101 2.8849 0.0013 7 1 5.9734 2.2951 0.8429 8 7 6.0999 2.3001 -1.2542 9 6 7.4238 1.6908 -1.0698 10 1 7.5048 1.2972 -0.0566 11 6 8.4909 2.7317 -1.2911 12 1 8.2133 3.7446 -1.5430 13 6 9.8215 2.3911 -1.1709 14 7 10.1595 1.1579 -0.8636 15 14 11.1444 3.6812 -1.4458 16 1 11.4563 4.3523 -0.1584 17 1 12.3696 3.0291 -1.9738 18 1 10.6586 4.6876 -2.4238 19 6 7.6057 0.5522 -2.0755 20 6 6.5982 -0.5594 -1.7750 21 6 6.1125 4.3003 0.1258 22 6 6.1495 5.1208 -0.9862 23 6 6.6108 6.4189 -0.8721 24 6 7.0363 6.8960 0.3536 25 6 7.0010 6.0749 1.4650 26 6 6.5388 4.7771 1.3512 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9338 0.9285 -0.8891 35 1 3.9331 0.9287 0.8908 36 1 3.7164 3.3985 0.8912 37 1 3.7171 3.3990 -0.8887 38 1 5.4413 1.6297 -1.6218 39 1 11.0956 0.9184 -0.7787 40 1 7.4406 0.9291 -3.0848 41 1 8.6181 0.1561 -1.9967 42 1 6.7047 -1.3552 -2.5122 43 1 6.7853 -0.9597 -0.7786 44 1 5.5870 -0.1552 -1.8202 45 1 5.8168 4.7481 -1.9436 46 1 6.6345 7.0617 -1.7397 47 1 7.3971 7.9101 0.4426 48 1 7.3338 6.4477 2.4225 49 1 6.5115 4.1355 2.2195 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183716.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:53 Heat of formation + Delta-G solvation = -20.482696 kcal Electronic energy + Delta-G solvation = -23938.430085 eV Core-core repulsion = 20863.363595 eV Total energy + Delta-G solvation = -3075.066489 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.39240 -38.38946 -36.89147 -35.14606 -33.60831 -32.09625 -31.61101 -30.98213 -28.84351 -27.48681 -25.03650 -24.50575 -23.27073 -22.54517 -21.77064 -21.34587 -20.91724 -18.32680 -17.51143 -16.98084 -16.49575 -16.44583 -16.04471 -15.78907 -15.22262 -14.84565 -14.70896 -14.58845 -14.34460 -14.06125 -13.78482 -13.65548 -13.51373 -13.31395 -13.08059 -12.96674 -12.70626 -12.63038 -12.52840 -12.38626 -12.05293 -11.87359 -11.82842 -11.76324 -11.64559 -11.49220 -11.36626 -11.21863 -11.16460 -10.91280 -10.37364 -9.58886 -9.32231 -8.96177 -8.00462 -6.07379 0.68375 0.74799 1.38050 1.39832 1.49401 2.46470 3.08940 3.25679 3.60378 3.84463 4.03742 4.09014 4.23075 4.24518 4.31703 4.36669 4.44051 4.49425 4.52222 4.55451 4.59058 4.71694 4.72993 4.82787 4.84918 4.90042 4.95729 4.98373 5.07245 5.13678 5.16069 5.22732 5.24761 5.28447 5.33763 5.38269 5.41947 5.42379 5.49646 5.56201 5.63695 5.74854 5.79717 5.83796 5.97052 6.02583 6.34977 6.45360 6.60714 7.06988 7.08506 7.60046 9.03295 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.005588 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.539082 B = 5009.729882 C = 6758.600312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.110 4.110 4 C -0.119 4.119 5 C -0.104 4.104 6 C 0.133 3.867 7 H 0.021 0.979 8 N -0.674 5.674 9 C 0.232 3.768 10 H -0.036 1.036 11 C -0.485 4.485 12 H 0.059 0.941 13 C 0.009 3.991 14 N -0.924 5.924 15 Si 0.938 3.062 16 H -0.284 1.284 17 H -0.286 1.286 18 H -0.271 1.271 19 C -0.123 4.123 20 C -0.138 4.138 21 C -0.057 4.057 22 C -0.091 4.091 23 C -0.139 4.139 24 C -0.139 4.139 25 C -0.133 4.133 26 C -0.138 4.138 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.332 0.668 39 H 0.255 0.745 40 H 0.036 0.964 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.034 0.966 44 H 0.057 0.943 45 H 0.118 0.882 46 H 0.132 0.868 47 H 0.139 0.861 48 H 0.135 0.865 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.599 3.280 2.408 16.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.148 4.148 4 C -0.156 4.156 5 C -0.142 4.142 6 C 0.023 3.977 7 H 0.039 0.961 8 N -0.308 5.308 9 C 0.123 3.877 10 H -0.018 1.018 11 C -0.524 4.524 12 H 0.077 0.923 13 C -0.188 4.188 14 N -0.566 5.566 15 Si 0.766 3.234 16 H -0.211 1.211 17 H -0.212 1.212 18 H -0.196 1.196 19 C -0.162 4.162 20 C -0.196 4.196 21 C -0.058 4.058 22 C -0.110 4.110 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.151 4.151 26 C -0.157 4.157 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.153 0.847 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.076 0.924 45 H 0.136 0.864 46 H 0.150 0.850 47 H 0.156 0.844 48 H 0.153 0.847 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.202 3.753 2.183 15.810 hybrid contribution 1.275 -0.461 0.500 1.445 sum -13.927 3.292 2.683 14.560 Atomic orbital electron populations 1.21759 0.95065 1.01900 1.02009 1.21548 0.96512 0.96600 1.01818 1.21537 0.93739 0.97129 1.02356 1.21637 0.96625 0.95912 1.01475 1.21686 0.92066 0.97615 1.02832 1.20368 0.94624 0.91545 0.91169 0.96148 1.60597 1.04372 1.38843 1.26984 1.18921 0.85939 0.91233 0.91565 1.01844 1.21565 0.90490 0.96602 1.43792 0.92291 1.25547 1.00442 0.96611 0.96226 1.69994 1.16941 1.18504 1.51150 0.85843 0.79447 0.80055 0.78055 1.21088 1.21194 1.19590 1.21622 1.00414 0.95993 0.98170 1.21759 0.98975 0.98523 1.00307 1.19884 0.97388 0.95234 0.93246 1.20958 0.98637 0.93150 0.98227 1.21391 0.99988 0.96098 0.98249 1.21317 1.00902 1.00606 0.92833 1.21257 1.00332 0.93925 0.99565 1.21137 1.00594 0.96568 0.97402 0.92380 0.92525 0.92497 0.92283 0.92452 0.91682 0.91563 0.92387 0.92951 0.91010 0.90927 0.84717 0.93570 0.94505 0.91595 0.92467 0.94687 0.92398 0.86385 0.85044 0.84356 0.84715 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 71.98 0.71 -1.54 16 2 C -0.13 -2.29 5.93 30.59 0.18 -2.11 16 3 C -0.11 -2.14 5.21 30.59 0.16 -1.98 16 4 C -0.12 -2.90 5.05 30.59 0.15 -2.75 16 5 C -0.10 -2.88 4.77 30.60 0.15 -2.73 16 6 C 0.13 4.86 2.25 44.17 0.10 4.96 16 7 H 0.02 0.85 7.21 -2.39 -0.02 0.83 16 8 N -0.67 -27.12 5.40 -477.13 -2.58 -29.70 16 9 C 0.23 11.44 2.04 44.17 0.09 11.53 16 10 H -0.04 -2.02 7.35 -2.39 -0.02 -2.04 16 11 C -0.49 -26.77 8.09 25.60 0.21 -26.56 16 12 H 0.06 3.30 6.10 -2.91 -0.02 3.29 16 13 C 0.01 0.49 5.29 84.66 0.45 0.93 16 14 N -0.92 -54.14 11.29 21.45 0.24 -53.90 16 15 Si 0.94 45.73 29.54 68.60 2.03 47.75 16 16 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 17 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 18 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 19 C -0.12 -5.77 5.34 30.59 0.16 -5.61 16 20 C -0.14 -5.12 9.78 71.98 0.70 -4.41 16 21 C -0.06 -2.14 3.99 -19.87 -0.08 -2.22 16 22 C -0.09 -3.37 7.92 22.27 0.18 -3.19 16 23 C -0.14 -4.58 10.05 22.27 0.22 -4.36 16 24 C -0.14 -4.26 10.05 22.27 0.22 -4.03 16 25 C -0.13 -4.25 10.05 22.27 0.22 -4.03 16 26 C -0.14 -4.98 9.67 22.27 0.22 -4.76 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.50 5.77 -2.39 -0.01 1.48 16 35 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.33 11.91 4.24 -89.69 -0.38 11.53 16 39 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 3.56 5.96 -2.39 -0.01 3.55 16 42 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.06 1.86 5.71 -2.39 -0.01 1.85 16 45 H 0.12 4.41 7.71 -2.91 -0.02 4.39 16 46 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 47 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 48 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 49 H 0.11 3.85 8.04 -2.91 -0.02 3.83 16 Total: -1.00 -61.62 379.36 4.25 -57.37 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.51 Total: 31.34 kcal Atomic # 6 Polarization: -56.92 SS G_CDS: 4.05 Total: -52.87 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -2.34 Total: -83.60 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -61.62 4.25 -57.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183716.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.888 kcal (2) G-P(sol) polarization free energy of solvation -61.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds