Wall clock time and date at job start Tue Mar 31 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47291 * 2 1 4 4 C 1.53001 * 109.47291 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47291 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47291 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47114 * 305.00206 * 6 5 4 8 8 N 1.46901 * 109.47091 * 64.99600 * 6 5 4 9 9 C 1.46897 * 110.99967 * 203.77170 * 8 6 5 10 10 H 1.08994 * 109.47563 * 324.71566 * 9 8 6 11 11 C 1.50696 * 109.47201 * 84.71735 * 9 8 6 12 12 H 1.08008 * 119.99887 * 0.02562 * 11 9 8 13 13 C 1.37880 * 120.00591 * 179.97438 * 11 9 8 14 14 N 1.31518 * 119.99357 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00425 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47012 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47341 * 120.00170 * 15 13 11 18 18 H 1.48504 * 109.47059 * 239.99931 * 15 13 11 19 19 C 1.53008 * 109.47175 * 204.71524 * 9 8 6 20 20 C 1.52993 * 109.46897 * 65.46632 * 19 9 8 21 21 C 1.50698 * 109.47154 * 184.99925 * 6 5 4 22 22 C 1.38236 * 120.00002 * 286.22524 * 21 6 5 23 23 C 1.38239 * 120.00050 * 179.80917 * 22 21 6 24 24 C 1.38239 * 119.99709 * 0.40494 * 23 22 21 25 25 C 1.38237 * 119.99882 * 359.85446 * 24 23 22 26 26 C 1.38231 * 120.00183 * 359.95723 * 25 24 23 27 27 H 1.08999 * 109.47242 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47190 * 300.00615 * 1 2 3 29 29 H 1.09006 * 109.47039 * 60.00468 * 1 2 3 30 30 H 1.09000 * 109.46986 * 239.99934 * 2 1 3 31 31 H 1.09001 * 109.46879 * 120.00255 * 2 1 3 32 32 H 1.08991 * 109.47506 * 59.99578 * 3 2 1 33 33 H 1.09005 * 109.47163 * 299.99487 * 3 2 1 34 34 H 1.09000 * 109.46986 * 59.99934 * 4 3 2 35 35 H 1.09001 * 109.46879 * 300.00255 * 4 3 2 36 36 H 1.09001 * 109.47455 * 59.99579 * 5 4 3 37 37 H 1.09005 * 109.47163 * 299.99487 * 5 4 3 38 38 H 1.00900 * 111.00160 * 79.81974 * 8 6 5 39 39 H 0.97004 * 119.99566 * 180.02562 * 14 13 11 40 40 H 1.09000 * 109.46976 * 185.46988 * 19 9 8 41 41 H 1.08998 * 109.46818 * 305.46763 * 19 9 8 42 42 H 1.09007 * 109.47174 * 62.40145 * 20 19 9 43 43 H 1.09008 * 109.47047 * 182.39816 * 20 19 9 44 44 H 1.09000 * 109.47735 * 302.39847 * 20 19 9 45 45 H 1.08002 * 120.00273 * 0.02562 * 22 21 6 46 46 H 1.07999 * 120.00189 * 180.23531 * 23 22 21 47 47 H 1.07996 * 119.99464 * 179.83078 * 24 23 22 48 48 H 1.08002 * 119.99606 * 179.97438 * 25 24 23 49 49 H 1.07996 * 119.99773 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8848 0.0000 6 6 5.6101 2.8848 0.0013 7 1 5.9727 2.2960 0.8438 8 7 6.1008 2.2985 -1.2531 9 6 7.4594 1.7647 -1.0885 10 1 8.0189 2.4001 -0.4021 11 6 7.3857 0.3664 -0.5315 12 1 6.4254 -0.0812 -0.3212 13 6 8.5439 -0.3421 -0.2914 14 7 9.7130 0.2023 -0.5489 15 14 8.4524 -2.0752 0.3997 16 1 7.0306 -2.4534 0.6009 17 1 9.0871 -3.0218 -0.5521 18 1 9.1670 -2.1277 1.7005 19 6 8.1641 1.7362 -2.4463 20 6 8.3607 3.1678 -2.9489 21 6 6.1123 4.3003 0.1245 22 6 6.0282 5.1599 -0.9548 23 6 6.4853 6.4596 -0.8406 24 6 7.0342 6.8970 0.3503 25 6 7.1231 6.0358 1.4280 26 6 6.6625 4.7374 1.3149 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8898 33 1 1.6768 1.9563 -0.8901 34 1 3.9337 0.9284 -0.8891 35 1 3.9330 0.9287 0.8909 36 1 3.7163 3.3993 0.8895 37 1 3.7172 3.3982 -0.8905 38 1 6.0650 2.9706 -2.0048 39 1 10.5279 -0.2963 -0.3803 40 1 9.1347 1.2513 -2.3418 41 1 7.5555 1.1810 -3.1600 42 1 9.0045 3.7107 -2.2567 43 1 8.8243 3.1462 -3.9353 44 1 7.3937 3.6666 -3.0128 45 1 5.6023 4.8173 -1.8863 46 1 6.4162 7.1323 -1.6827 47 1 7.3937 7.9115 0.4387 48 1 7.5523 6.3775 2.3583 49 1 6.7316 4.0647 2.1570 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183718.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:57 Heat of formation + Delta-G solvation = -12.142905 kcal Electronic energy + Delta-G solvation = -23834.923925 eV Core-core repulsion = 20760.219076 eV Total energy + Delta-G solvation = -3074.704849 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.32041 -36.77488 -35.57633 -33.65859 -31.75308 -30.86277 -30.59895 -29.56719 -27.25595 -25.99327 -23.67815 -22.77712 -22.18907 -21.45943 -20.56374 -19.62076 -19.45040 -16.78497 -16.12385 -15.57711 -15.04380 -14.94136 -14.45304 -14.25210 -13.84407 -13.77239 -13.38043 -13.10282 -13.03337 -12.93952 -12.61446 -12.38448 -12.18521 -11.81804 -11.67271 -11.35163 -11.18168 -11.15197 -10.92378 -10.84469 -10.70867 -10.57315 -10.53846 -10.30326 -10.17203 -10.00341 -9.91528 -9.62487 -9.53609 -9.01907 -8.61270 -8.34727 -8.28960 -7.19784 -5.92795 -3.96415 1.69216 1.71105 3.32605 3.40990 3.45621 4.11337 4.47491 4.93732 5.12215 5.15266 5.18379 5.25979 5.27961 5.32758 5.39707 5.40940 5.58437 5.71663 5.75048 5.85133 5.88645 5.91629 5.96120 6.08324 6.14468 6.20702 6.22020 6.27532 6.29394 6.32410 6.38745 6.44393 6.46413 6.53440 6.56073 6.77064 6.78100 6.81866 6.89609 7.03488 7.05171 7.15311 7.23828 7.32829 7.58463 7.82659 7.96647 8.35235 8.44445 8.79990 9.12345 9.68330 11.12548 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.007534 B = 0.007396 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3715.629642 B = 3784.941709 C = 6442.208199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.110 4.110 5 C -0.095 4.095 6 C 0.127 3.873 7 H 0.089 0.911 8 N -0.671 5.671 9 C 0.220 3.780 10 H 0.003 0.997 11 C -0.489 4.489 12 H 0.063 0.937 13 C 0.054 3.946 14 N -0.896 5.896 15 Si 0.890 3.110 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.287 1.287 19 C -0.125 4.125 20 C -0.147 4.147 21 C -0.090 4.090 22 C -0.115 4.115 23 C -0.121 4.121 24 C -0.134 4.134 25 C -0.121 4.121 26 C -0.112 4.112 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.317 0.683 39 H 0.257 0.743 40 H 0.098 0.902 41 H 0.039 0.961 42 H 0.041 0.959 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.118 0.882 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.115 0.885 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.705 8.627 0.967 13.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.155 4.155 4 C -0.148 4.148 5 C -0.133 4.133 6 C 0.016 3.984 7 H 0.108 0.892 8 N -0.302 5.302 9 C 0.113 3.887 10 H 0.021 0.979 11 C -0.528 4.528 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.214 1.214 19 C -0.164 4.164 20 C -0.205 4.205 21 C -0.092 4.092 22 C -0.134 4.134 23 C -0.139 4.139 24 C -0.152 4.152 25 C -0.139 4.139 26 C -0.130 4.130 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.136 0.864 39 H 0.067 0.933 40 H 0.116 0.884 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.132 0.868 48 H 0.133 0.867 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.818 7.936 1.068 13.459 hybrid contribution 0.785 -0.016 0.406 0.884 sum -10.033 7.919 1.475 12.866 Atomic orbital electron populations 1.21782 0.96594 1.01091 1.01371 1.21537 0.95011 0.97593 1.02222 1.21634 0.96888 0.96003 1.01018 1.21479 0.93019 0.96757 1.03534 1.21500 0.94404 0.96999 1.00401 1.20647 0.93977 0.87792 0.95983 0.89242 1.60944 1.28419 1.37228 1.03623 1.19130 0.82293 0.94610 0.92707 0.97907 1.21262 0.92469 0.98828 1.40204 0.91915 1.24951 0.95538 0.97976 0.96101 1.69894 0.97199 1.37148 1.49337 0.86558 0.78026 0.85003 0.78523 1.19762 1.21240 1.21368 1.21758 1.03914 0.93348 0.97356 1.21873 0.99353 0.99900 0.99376 1.21022 0.96936 0.97858 0.93387 1.20922 1.00447 0.93521 0.98469 1.21036 0.99429 0.96015 0.97459 1.21013 1.01084 0.99388 0.93738 1.21090 1.00192 0.94125 0.98541 1.21123 0.98508 0.95666 0.97728 0.93189 0.93120 0.93024 0.91885 0.92190 0.92958 0.92613 0.89962 0.92501 0.93120 0.92763 0.86395 0.93266 0.88354 0.94233 0.93983 0.94659 0.94665 0.86452 0.86698 0.86816 0.86660 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.13 -1.54 5.93 -26.73 -0.16 -1.70 16 3 C -0.12 -1.51 5.21 -26.73 -0.14 -1.65 16 4 C -0.11 -1.70 5.10 -26.73 -0.14 -1.84 16 5 C -0.09 -1.45 4.80 -26.73 -0.13 -1.58 16 6 C 0.13 2.29 2.04 -68.86 -0.14 2.15 16 7 H 0.09 1.84 7.43 -51.93 -0.39 1.46 16 8 N -0.67 -13.48 5.49 -102.17 -0.56 -14.05 16 9 C 0.22 5.31 1.84 -68.86 -0.13 5.18 16 10 H 0.00 0.09 7.59 -51.93 -0.39 -0.31 16 11 C -0.49 -13.09 8.48 -34.44 -0.29 -13.38 16 12 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 13 C 0.05 1.49 5.29 -17.82 -0.09 1.40 16 14 N -0.90 -25.40 11.29 55.43 0.63 -24.78 16 15 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 C -0.13 -2.94 5.36 -26.73 -0.14 -3.08 16 20 C -0.15 -2.91 9.78 37.15 0.36 -2.55 16 21 C -0.09 -1.52 4.53 -104.63 -0.47 -2.00 16 22 C -0.12 -1.79 8.92 -39.58 -0.35 -2.14 16 23 C -0.12 -1.70 10.05 -39.58 -0.40 -2.09 16 24 C -0.13 -1.83 10.05 -39.58 -0.40 -2.22 16 25 C -0.12 -1.75 10.05 -39.58 -0.40 -2.15 16 26 C -0.11 -1.82 9.67 -39.59 -0.38 -2.20 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.45 7.75 -51.93 -0.40 1.05 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.32 5.96 4.42 -39.29 -0.17 5.79 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 43 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 44 H 0.03 0.62 6.32 -51.93 -0.33 0.30 16 45 H 0.12 1.72 6.87 -52.49 -0.36 1.36 16 46 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 47 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 48 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 49 H 0.12 1.87 7.99 -52.49 -0.42 1.45 16 LS Contribution 385.11 15.07 5.80 5.80 Total: -1.00 -27.69 385.11 -11.27 -38.95 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -9.08 Total: 8.75 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: -3.03 Total: -31.04 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.07 Total: -38.82 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -27.69 -11.27 -38.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183718.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.808 kcal (2) G-P(sol) polarization free energy of solvation -27.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds