Wall clock time and date at job start Tue Mar 31 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47291 * 2 1 4 4 C 1.53001 * 109.47291 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47291 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47291 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47114 * 305.00206 * 6 5 4 8 8 N 1.46901 * 109.47091 * 64.99600 * 6 5 4 9 9 C 1.46897 * 110.99967 * 203.77170 * 8 6 5 10 10 H 1.08994 * 109.47563 * 324.71566 * 9 8 6 11 11 C 1.50696 * 109.47201 * 84.71735 * 9 8 6 12 12 H 1.08008 * 119.99887 * 0.02562 * 11 9 8 13 13 C 1.37880 * 120.00591 * 179.97438 * 11 9 8 14 14 N 1.31518 * 119.99357 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00425 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47012 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47341 * 120.00170 * 15 13 11 18 18 H 1.48504 * 109.47059 * 239.99931 * 15 13 11 19 19 C 1.53008 * 109.47175 * 204.71524 * 9 8 6 20 20 C 1.52993 * 109.46897 * 65.46632 * 19 9 8 21 21 C 1.50698 * 109.47154 * 184.99925 * 6 5 4 22 22 C 1.38236 * 120.00002 * 286.22524 * 21 6 5 23 23 C 1.38239 * 120.00050 * 179.80917 * 22 21 6 24 24 C 1.38239 * 119.99709 * 0.40494 * 23 22 21 25 25 C 1.38237 * 119.99882 * 359.85446 * 24 23 22 26 26 C 1.38231 * 120.00183 * 359.95723 * 25 24 23 27 27 H 1.08999 * 109.47242 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47190 * 300.00615 * 1 2 3 29 29 H 1.09006 * 109.47039 * 60.00468 * 1 2 3 30 30 H 1.09000 * 109.46986 * 239.99934 * 2 1 3 31 31 H 1.09001 * 109.46879 * 120.00255 * 2 1 3 32 32 H 1.08991 * 109.47506 * 59.99578 * 3 2 1 33 33 H 1.09005 * 109.47163 * 299.99487 * 3 2 1 34 34 H 1.09000 * 109.46986 * 59.99934 * 4 3 2 35 35 H 1.09001 * 109.46879 * 300.00255 * 4 3 2 36 36 H 1.09001 * 109.47455 * 59.99579 * 5 4 3 37 37 H 1.09005 * 109.47163 * 299.99487 * 5 4 3 38 38 H 1.00900 * 111.00160 * 79.81974 * 8 6 5 39 39 H 0.97004 * 119.99566 * 180.02562 * 14 13 11 40 40 H 1.09000 * 109.46976 * 185.46988 * 19 9 8 41 41 H 1.08998 * 109.46818 * 305.46763 * 19 9 8 42 42 H 1.09007 * 109.47174 * 62.40145 * 20 19 9 43 43 H 1.09008 * 109.47047 * 182.39816 * 20 19 9 44 44 H 1.09000 * 109.47735 * 302.39847 * 20 19 9 45 45 H 1.08002 * 120.00273 * 0.02562 * 22 21 6 46 46 H 1.07999 * 120.00189 * 180.23531 * 23 22 21 47 47 H 1.07996 * 119.99464 * 179.83078 * 24 23 22 48 48 H 1.08002 * 119.99606 * 179.97438 * 25 24 23 49 49 H 1.07996 * 119.99773 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8848 0.0000 6 6 5.6101 2.8848 0.0013 7 1 5.9727 2.2960 0.8438 8 7 6.1008 2.2985 -1.2531 9 6 7.4594 1.7647 -1.0885 10 1 8.0189 2.4001 -0.4021 11 6 7.3857 0.3664 -0.5315 12 1 6.4254 -0.0812 -0.3212 13 6 8.5439 -0.3421 -0.2914 14 7 9.7130 0.2023 -0.5489 15 14 8.4524 -2.0752 0.3997 16 1 7.0306 -2.4534 0.6009 17 1 9.0871 -3.0218 -0.5521 18 1 9.1670 -2.1277 1.7005 19 6 8.1641 1.7362 -2.4463 20 6 8.3607 3.1678 -2.9489 21 6 6.1123 4.3003 0.1245 22 6 6.0282 5.1599 -0.9548 23 6 6.4853 6.4596 -0.8406 24 6 7.0342 6.8970 0.3503 25 6 7.1231 6.0358 1.4280 26 6 6.6625 4.7374 1.3149 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8898 33 1 1.6768 1.9563 -0.8901 34 1 3.9337 0.9284 -0.8891 35 1 3.9330 0.9287 0.8909 36 1 3.7163 3.3993 0.8895 37 1 3.7172 3.3982 -0.8905 38 1 6.0650 2.9706 -2.0048 39 1 10.5279 -0.2963 -0.3803 40 1 9.1347 1.2513 -2.3418 41 1 7.5555 1.1810 -3.1600 42 1 9.0045 3.7107 -2.2567 43 1 8.8243 3.1462 -3.9353 44 1 7.3937 3.6666 -3.0128 45 1 5.6023 4.8173 -1.8863 46 1 6.4162 7.1323 -1.6827 47 1 7.3937 7.9115 0.4387 48 1 7.5523 6.3775 2.3583 49 1 6.7316 4.0647 2.1570 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183718.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:56 Heat of formation + Delta-G solvation = -23.918049 kcal Electronic energy + Delta-G solvation = -23835.434533 eV Core-core repulsion = 20760.219076 eV Total energy + Delta-G solvation = -3075.215457 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.59694 -38.21357 -36.91851 -35.17571 -33.66066 -32.06023 -31.76461 -31.05659 -28.72199 -27.66587 -25.00757 -24.48699 -23.42337 -22.55055 -21.69892 -21.34340 -20.97151 -18.35707 -17.82706 -17.00746 -16.50741 -16.22279 -16.01859 -15.62327 -15.33786 -14.94161 -14.73212 -14.61007 -14.28075 -14.17555 -14.03746 -13.64379 -13.52489 -13.27867 -13.17742 -12.95055 -12.72961 -12.51528 -12.47444 -12.27453 -12.12206 -11.97243 -11.78962 -11.74248 -11.57283 -11.53149 -11.37768 -11.29303 -11.18362 -10.90662 -10.41078 -9.77383 -9.54156 -8.92203 -8.03854 -6.14478 0.52225 0.54659 1.38138 1.40863 1.52057 2.44410 2.94286 3.21664 3.69640 3.75002 4.04701 4.13282 4.13536 4.21050 4.29236 4.30965 4.42804 4.50701 4.55899 4.58166 4.61843 4.68794 4.72060 4.77460 4.81582 4.94860 4.97661 5.02172 5.09063 5.15604 5.16886 5.20712 5.24208 5.28597 5.31269 5.33908 5.40374 5.49008 5.57921 5.61314 5.63430 5.64706 5.73203 5.75750 5.83998 5.95030 6.18363 6.41514 6.57239 7.00702 7.06179 7.54211 8.99429 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.007534 B = 0.007396 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3715.629642 B = 3784.941709 C = 6442.208199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C -0.109 4.109 4 C -0.105 4.105 5 C -0.084 4.084 6 C 0.132 3.868 7 H 0.052 0.948 8 N -0.667 5.667 9 C 0.233 3.767 10 H -0.035 1.035 11 C -0.501 4.501 12 H 0.051 0.949 13 C 0.009 3.991 14 N -0.921 5.921 15 Si 0.948 3.052 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.285 1.285 19 C -0.122 4.122 20 C -0.134 4.134 21 C -0.110 4.110 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.132 4.132 25 C -0.125 4.125 26 C -0.137 4.137 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.037 0.963 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.326 0.674 39 H 0.257 0.743 40 H 0.065 0.935 41 H 0.036 0.964 42 H 0.029 0.971 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.125 0.875 46 H 0.145 0.855 47 H 0.146 0.854 48 H 0.137 0.863 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.065 10.341 0.397 15.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.147 4.147 4 C -0.143 4.143 5 C -0.122 4.122 6 C 0.021 3.979 7 H 0.070 0.930 8 N -0.299 5.299 9 C 0.125 3.875 10 H -0.018 1.018 11 C -0.540 4.540 12 H 0.070 0.930 13 C -0.189 4.189 14 N -0.562 5.562 15 Si 0.775 3.225 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.211 1.211 19 C -0.160 4.160 20 C -0.191 4.191 21 C -0.111 4.111 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.150 4.150 25 C -0.143 4.143 26 C -0.155 4.155 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.146 0.854 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.143 0.857 46 H 0.163 0.837 47 H 0.164 0.836 48 H 0.155 0.845 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.196 9.658 0.499 15.565 hybrid contribution 1.223 -0.495 0.617 1.456 sum -10.973 9.163 1.116 14.339 Atomic orbital electron populations 1.21741 0.94665 1.01864 1.02114 1.21543 0.96716 0.96974 1.01368 1.21560 0.94419 0.96700 1.02010 1.21394 0.95255 0.96378 1.01281 1.21419 0.92224 0.97049 1.01526 1.20520 0.95620 0.88313 0.93458 0.93006 1.60836 1.25773 1.38205 1.05056 1.18793 0.83858 0.92775 0.92081 1.01790 1.21516 0.91984 1.00201 1.40275 0.93035 1.25635 0.95305 1.01404 0.96538 1.70025 0.97603 1.38379 1.50161 0.85648 0.78007 0.80953 0.77886 1.19446 1.20730 1.21074 1.21593 1.01840 0.95654 0.96944 1.21714 1.00498 0.97040 0.99893 1.20897 0.98440 0.97265 0.94546 1.21056 1.00956 0.94228 0.98103 1.21417 0.98136 0.95621 0.98609 1.21437 0.99869 1.00641 0.93039 1.21384 0.99590 0.93318 1.00034 1.21231 0.99810 0.96885 0.97611 0.92477 0.92309 0.92317 0.92934 0.92975 0.91778 0.91627 0.92536 0.94429 0.91843 0.91493 0.85360 0.93337 0.91645 0.94519 0.95212 0.92485 0.92522 0.85728 0.83693 0.83587 0.84534 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.91 71.98 0.71 -2.03 16 2 C -0.13 -3.06 5.93 30.59 0.18 -2.88 16 3 C -0.11 -2.69 5.21 30.59 0.16 -2.53 16 4 C -0.11 -3.32 5.10 30.59 0.16 -3.17 16 5 C -0.08 -2.57 4.80 30.59 0.15 -2.43 16 6 C 0.13 4.91 2.04 44.17 0.09 5.00 16 7 H 0.05 2.30 7.43 -2.39 -0.02 2.28 16 8 N -0.67 -27.49 5.49 -477.16 -2.62 -30.10 16 9 C 0.23 11.71 1.84 44.17 0.08 11.79 16 10 H -0.04 -2.04 7.59 -2.39 -0.02 -2.05 16 11 C -0.50 -27.95 8.48 25.60 0.22 -27.73 16 12 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 13 C 0.01 0.50 5.29 84.65 0.45 0.94 16 14 N -0.92 -53.93 11.29 21.45 0.24 -53.68 16 15 Si 0.95 44.99 29.54 68.60 2.03 47.02 16 16 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 19 C -0.12 -5.83 5.36 30.59 0.16 -5.66 16 20 C -0.13 -5.18 9.78 71.98 0.70 -4.47 16 21 C -0.11 -3.74 4.53 -19.87 -0.09 -3.83 16 22 C -0.13 -3.68 8.92 22.27 0.20 -3.48 16 23 C -0.12 -3.00 10.05 22.27 0.22 -2.77 16 24 C -0.13 -3.20 10.05 22.27 0.22 -2.97 16 25 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 26 C -0.14 -4.53 9.67 22.27 0.22 -4.32 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.06 2.06 7.75 -2.39 -0.02 2.05 16 35 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.33 12.18 4.42 -89.69 -0.40 11.79 16 39 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 40 H 0.07 3.59 5.94 -2.39 -0.01 3.58 16 41 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 44 H 0.06 1.92 6.32 -2.39 -0.02 1.91 16 45 H 0.12 3.40 6.87 -2.91 -0.02 3.38 16 46 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 47 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 48 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 49 H 0.11 3.68 7.99 -2.91 -0.02 3.65 16 Total: -1.00 -61.95 385.11 4.19 -57.76 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.48 Total: 32.77 kcal Atomic # 6 Polarization: -57.82 SS G_CDS: 4.06 Total: -53.76 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -2.38 Total: -83.79 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -61.95 4.19 -57.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183718.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.838 kcal (2) G-P(sol) polarization free energy of solvation -61.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds