Wall clock time and date at job start Tue Mar 31 2020 06:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86812 * 120.00051 * 2 1 4 4 H 1.48500 * 109.46787 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46853 * 299.99922 * 3 2 1 6 6 H 1.48492 * 109.46722 * 59.99761 * 3 2 1 7 7 C 1.37881 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00350 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99737 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47059 * 180.02562 * 9 7 2 11 11 S 1.81405 * 109.47267 * 180.02562 * 10 9 7 12 12 C 1.81394 * 103.00152 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47135 * 179.97438 * 12 11 10 14 14 C 1.38335 * 120.01238 * 89.99671 * 13 12 11 15 15 Cl 1.73594 * 120.00730 * 359.70413 * 14 13 12 16 16 C 1.38366 * 119.98539 * 179.97438 * 14 13 12 17 17 C 1.38221 * 120.00990 * 0.02562 * 16 14 13 18 18 C 1.38216 * 120.03026 * 359.97438 * 17 16 14 19 19 C 1.38329 * 120.01281 * 269.97334 * 13 12 11 20 20 Cl 1.73600 * 120.00459 * 0.02562 * 19 13 12 21 21 H 0.97008 * 119.99957 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46919 * 59.99914 * 9 7 2 23 23 H 1.09001 * 109.46792 * 300.00234 * 9 7 2 24 24 H 1.08996 * 109.47300 * 59.99554 * 10 9 7 25 25 H 1.09007 * 109.47019 * 299.99928 * 10 9 7 26 26 H 1.08995 * 109.47524 * 59.99441 * 12 11 10 27 27 H 1.09010 * 109.47160 * 299.99684 * 12 11 10 28 28 H 1.07991 * 119.98945 * 179.97438 * 16 14 13 29 29 H 1.07998 * 119.98223 * 180.02562 * 17 16 14 30 30 H 1.08002 * 119.99587 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0018 11 16 1.3383 -5.2331 0.0011 12 6 2.6649 -6.4701 0.0019 13 6 2.0634 -7.8519 0.0020 14 6 1.7876 -8.4865 -1.1958 15 17 2.1273 -7.6885 -2.6995 16 6 1.2357 -9.7554 -1.1950 17 6 0.9596 -10.3884 0.0023 18 6 1.2349 -9.7548 1.1994 19 6 1.7872 -8.4862 1.1999 20 17 2.1329 -7.6904 2.7035 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5566 0.8903 24 1 2.8713 -3.6038 0.8922 25 1 2.8726 -3.6046 -0.8878 26 1 3.2805 -6.3422 0.8923 27 1 3.2818 -6.3421 -0.8877 28 1 1.0200 -10.2508 -2.1301 29 1 0.5292 -11.3790 0.0023 30 1 1.0185 -10.2498 2.1345 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058263041.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:37 Heat of formation + Delta-G solvation = -8.100108 kcal Electronic energy + Delta-G solvation = -15457.733210 eV Core-core repulsion = 12623.181815 eV Total energy + Delta-G solvation = -2834.551394 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.75849 -36.84361 -36.35040 -33.66519 -33.12003 -30.84520 -30.84090 -27.34965 -25.19234 -23.06237 -22.14101 -20.93116 -17.51984 -16.49737 -16.40571 -15.88818 -15.54001 -14.52615 -14.50913 -14.33873 -13.84543 -13.66763 -12.99885 -12.86657 -12.40631 -12.40251 -11.91018 -11.82739 -11.49563 -11.24417 -11.03286 -10.98409 -10.90366 -10.58197 -10.17712 -9.71810 -9.63351 -9.03520 -8.92575 -8.82322 -8.40889 -7.08086 -6.04494 -4.08871 0.68533 0.75690 1.73805 2.16086 2.25992 3.20202 3.29284 3.31834 3.36928 3.40787 4.30797 4.43248 4.54489 4.56617 4.91863 5.12401 5.19714 5.25273 5.31199 5.67822 5.78772 5.89332 5.91808 6.02518 6.21037 6.27734 6.75300 7.58939 7.67636 7.92097 8.29311 8.96320 9.54948 11.06326 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.023461 B = 0.003854 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.190049 B = 7262.978231 C = 8049.697764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.038 3.962 10 C -0.061 4.061 11 S -0.258 6.258 12 C -0.067 4.067 13 C -0.045 4.045 14 C -0.014 4.014 15 Cl -0.045 7.045 16 C -0.108 4.108 17 C -0.098 4.098 18 C -0.108 4.108 19 C -0.014 4.014 20 Cl -0.045 7.045 21 H 0.262 0.738 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.097 -22.878 0.004 23.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.209 4.209 11 S -0.028 6.028 12 C -0.215 4.215 13 C -0.048 4.048 14 C -0.043 4.043 15 Cl -0.016 7.016 16 C -0.127 4.127 17 C -0.118 4.118 18 C -0.127 4.127 19 C -0.043 4.043 20 Cl -0.016 7.016 21 H 0.071 0.929 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.930 -22.745 0.004 22.933 hybrid contribution 1.763 1.289 0.001 2.184 sum 4.694 -21.456 0.005 21.964 Atomic orbital electron populations 1.69983 1.06069 1.26719 1.50129 1.25008 0.94878 0.99271 0.95074 0.86479 0.80027 0.83496 0.77670 1.19690 1.20893 1.20898 1.21135 0.93036 0.90233 1.51583 0.92403 1.18899 0.93411 0.89201 0.98562 1.23719 1.01525 0.92453 1.03169 1.87105 1.15415 1.02190 1.98040 1.22357 1.00245 0.92459 1.06390 1.19021 0.99917 0.95268 0.90601 1.20682 1.02292 0.94091 0.87202 1.98401 1.93381 1.79776 1.30047 1.21135 0.98761 0.93122 0.99637 1.21051 0.99438 1.00293 0.90973 1.21133 0.98778 0.93104 0.99640 1.20679 1.02277 0.94105 0.87195 1.98401 1.93246 1.79901 1.30069 0.92852 0.95507 0.95514 0.91344 0.91351 0.88699 0.88697 0.84235 0.84136 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.04 1.00 4.98 -27.89 -0.14 0.86 16 10 C -0.06 -1.30 5.88 37.15 0.22 -1.08 16 11 S -0.26 -4.89 21.72 -107.50 -2.33 -7.22 16 12 C -0.07 -1.00 5.27 36.01 0.19 -0.81 16 13 C -0.05 -0.60 5.15 -104.55 -0.54 -1.14 16 14 C -0.01 -0.17 6.31 -39.50 -0.25 -0.42 16 15 Cl -0.05 -0.57 27.30 -51.86 -1.42 -1.98 16 16 C -0.11 -1.01 9.83 -39.54 -0.39 -1.40 16 17 C -0.10 -0.79 10.04 -39.60 -0.40 -1.19 16 18 C -0.11 -1.01 9.83 -39.54 -0.39 -1.40 16 19 C -0.01 -0.17 6.31 -39.50 -0.25 -0.42 16 20 Cl -0.05 -0.57 27.30 -51.86 -1.42 -1.98 16 21 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 22 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 26 H 0.09 1.36 6.90 -51.93 -0.36 1.00 16 27 H 0.09 1.36 6.91 -51.92 -0.36 1.00 16 28 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 30 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 305.24 15.07 4.60 4.60 Total: -1.00 -30.54 305.24 -10.42 -40.96 By element: Atomic # 1 Polarization: -1.19 SS G_CDS: -3.22 Total: -4.41 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -2.35 Total: -20.39 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.74 Total: -26.13 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -4.89 SS G_CDS: -2.33 Total: -7.22 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -2.83 Total: -3.97 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.54 -10.42 -40.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058263041.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.863 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds