Wall clock time and date at job start Tue Mar 31 2020 06:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86812 * 120.00051 * 2 1 4 4 H 1.48500 * 109.46787 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46853 * 299.99922 * 3 2 1 6 6 H 1.48492 * 109.46722 * 59.99761 * 3 2 1 7 7 C 1.37881 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00350 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99737 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47059 * 180.02562 * 9 7 2 11 11 S 1.81405 * 109.47267 * 180.02562 * 10 9 7 12 12 C 1.81394 * 103.00152 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47135 * 179.97438 * 12 11 10 14 14 C 1.38335 * 120.01238 * 89.99671 * 13 12 11 15 15 Cl 1.73594 * 120.00730 * 359.70413 * 14 13 12 16 16 C 1.38366 * 119.98539 * 179.97438 * 14 13 12 17 17 C 1.38221 * 120.00990 * 0.02562 * 16 14 13 18 18 C 1.38216 * 120.03026 * 359.97438 * 17 16 14 19 19 C 1.38329 * 120.01281 * 269.97334 * 13 12 11 20 20 Cl 1.73600 * 120.00459 * 0.02562 * 19 13 12 21 21 H 0.97008 * 119.99957 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46919 * 59.99914 * 9 7 2 23 23 H 1.09001 * 109.46792 * 300.00234 * 9 7 2 24 24 H 1.08996 * 109.47300 * 59.99554 * 10 9 7 25 25 H 1.09007 * 109.47019 * 299.99928 * 10 9 7 26 26 H 1.08995 * 109.47524 * 59.99441 * 12 11 10 27 27 H 1.09010 * 109.47160 * 299.99684 * 12 11 10 28 28 H 1.07991 * 119.98945 * 179.97438 * 16 14 13 29 29 H 1.07998 * 119.98223 * 180.02562 * 17 16 14 30 30 H 1.08002 * 119.99587 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0018 11 16 1.3383 -5.2331 0.0011 12 6 2.6649 -6.4701 0.0019 13 6 2.0634 -7.8519 0.0020 14 6 1.7876 -8.4865 -1.1958 15 17 2.1273 -7.6885 -2.6995 16 6 1.2357 -9.7554 -1.1950 17 6 0.9596 -10.3884 0.0023 18 6 1.2349 -9.7548 1.1994 19 6 1.7872 -8.4862 1.1999 20 17 2.1329 -7.6904 2.7035 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5566 0.8903 24 1 2.8713 -3.6038 0.8922 25 1 2.8726 -3.6046 -0.8878 26 1 3.2805 -6.3422 0.8923 27 1 3.2818 -6.3421 -0.8877 28 1 1.0200 -10.2508 -2.1301 29 1 0.5292 -11.3790 0.0023 30 1 1.0185 -10.2498 2.1345 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058263041.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:37 Heat of formation + Delta-G solvation = -23.121003 kcal Electronic energy + Delta-G solvation = -15458.384564 eV Core-core repulsion = 12623.181815 eV Total energy + Delta-G solvation = -2835.202749 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.58670 -37.76008 -37.24968 -35.78714 -34.04942 -32.91736 -31.63898 -28.40093 -27.23844 -23.87382 -23.45431 -22.51706 -18.68563 -18.35187 -17.30866 -17.13036 -16.54135 -16.49849 -15.61575 -15.56079 -15.36134 -14.66598 -14.49107 -14.05947 -13.84401 -13.46766 -13.34354 -13.14868 -12.95861 -12.61051 -12.42785 -12.18785 -12.09594 -11.93485 -11.86062 -11.66446 -11.40529 -10.87057 -10.62177 -9.80097 -9.75088 -8.61497 -8.23842 -6.37457 -0.24137 -0.03866 0.83917 0.95766 1.27168 1.40346 1.40730 1.54303 1.70884 2.39731 2.48010 3.09433 3.37404 3.62032 3.85388 4.18382 4.24231 4.29201 4.32814 4.37085 4.38235 4.60546 4.85654 5.03806 5.07928 5.19228 5.37095 5.48614 5.57606 5.72920 6.10310 6.76712 7.32047 8.88179 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.023461 B = 0.003854 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.190049 B = 7262.978231 C = 8049.697764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.046 3.954 10 C -0.051 4.051 11 S -0.283 6.283 12 C -0.048 4.048 13 C -0.073 4.073 14 C -0.027 4.027 15 Cl -0.059 7.059 16 C -0.106 4.106 17 C -0.079 4.079 18 C -0.106 4.106 19 C -0.027 4.027 20 Cl -0.059 7.059 21 H 0.266 0.734 22 H -0.004 1.004 23 H -0.004 1.004 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.165 0.835 29 H 0.184 0.816 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.838 -24.756 0.005 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.008 3.992 10 C -0.199 4.199 11 S -0.053 6.053 12 C -0.195 4.195 13 C -0.076 4.076 14 C -0.056 4.056 15 Cl -0.029 7.029 16 C -0.124 4.124 17 C -0.098 4.098 18 C -0.124 4.124 19 C -0.056 4.056 20 Cl -0.030 7.030 21 H 0.074 0.926 22 H 0.015 0.985 23 H 0.015 0.985 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.182 0.818 29 H 0.201 0.799 30 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.681 -24.622 0.005 24.895 hybrid contribution 1.480 1.657 0.001 2.222 sum 5.161 -22.965 0.006 23.537 Atomic orbital electron populations 1.70122 1.07970 1.27991 1.51003 1.26015 0.95775 1.03493 0.94319 0.85303 0.79051 0.78237 0.77869 1.18322 1.20239 1.20251 1.21570 0.93673 0.91353 1.51535 0.91538 1.18655 0.93630 0.91351 0.95571 1.23346 1.00294 0.92551 1.03738 1.87089 1.17840 1.02264 1.98118 1.22287 0.98459 0.92057 1.06694 1.18956 1.02250 0.94597 0.91809 1.20895 1.03201 0.95196 0.86270 1.98395 1.93564 1.80265 1.30725 1.21528 0.97424 0.91971 1.01487 1.21569 0.97168 1.01457 0.89601 1.21526 0.97442 0.91953 1.01490 1.20893 1.03183 0.95213 0.86265 1.98395 1.93430 1.80387 1.30742 0.92554 0.98522 0.98531 0.90694 0.90700 0.88372 0.88369 0.81766 0.79908 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.54 -31.24 9.11 25.60 0.23 -31.01 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 9 C 0.05 2.56 4.98 29.85 0.15 2.71 16 10 C -0.05 -2.25 5.88 71.98 0.42 -1.83 16 11 S -0.28 -10.98 21.72 -56.49 -1.23 -12.21 16 12 C -0.05 -1.42 5.27 71.24 0.38 -1.04 16 13 C -0.07 -1.88 5.15 -19.82 -0.10 -1.98 16 14 C -0.03 -0.61 6.31 22.32 0.14 -0.46 16 15 Cl -0.06 -1.43 27.30 -2.72 -0.07 -1.51 16 16 C -0.11 -1.64 9.83 22.30 0.22 -1.42 16 17 C -0.08 -0.93 10.04 22.26 0.22 -0.70 16 18 C -0.11 -1.64 9.83 22.29 0.22 -1.42 16 19 C -0.03 -0.60 6.31 22.32 0.14 -0.46 16 20 Cl -0.06 -1.43 27.30 -2.72 -0.07 -1.51 16 21 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 22 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 23 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 24 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 25 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 26 H 0.10 2.80 6.90 -2.39 -0.02 2.79 16 27 H 0.10 2.80 6.91 -2.39 -0.02 2.79 16 28 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 29 H 0.18 0.65 8.06 -2.91 -0.02 0.62 16 30 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -67.97 305.24 4.57 -63.40 By element: Atomic # 1 Polarization: -1.45 SS G_CDS: 1.15 Total: -0.31 kcal Atomic # 6 Polarization: -39.50 SS G_CDS: 2.48 Total: -37.01 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.28 Total: -57.31 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -10.98 SS G_CDS: -1.23 Total: -12.21 kcal Atomic # 17 Polarization: -2.86 SS G_CDS: -0.15 Total: -3.01 kcal Total: -67.97 4.57 -63.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058263041.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.280 kcal (2) G-P(sol) polarization free energy of solvation -67.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds