Wall clock time and date at job start Tue Mar 31 2020 06:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00239 * 2 1 4 4 H 1.48494 * 109.47309 * 239.99977 * 3 2 1 5 5 H 1.48496 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46797 * 119.99990 * 3 2 1 7 7 C 1.37878 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00396 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99731 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46960 * 180.02562 * 9 7 2 11 11 S 1.81396 * 109.47322 * 180.02562 * 10 9 7 12 12 C 1.81396 * 103.00506 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47434 * 179.97438 * 12 11 10 14 14 C 1.38249 * 119.99590 * 270.25226 * 13 12 11 15 15 C 1.38191 * 120.03041 * 180.29819 * 14 13 12 16 16 C 1.38386 * 120.00945 * 359.72592 * 15 14 13 17 17 Cl 1.73606 * 120.00614 * 180.02562 * 16 15 14 18 18 C 1.38306 * 119.99041 * 0.02562 * 16 15 14 19 19 C 1.38337 * 119.99277 * 89.99909 * 13 12 11 20 20 Cl 1.73599 * 120.00976 * 359.97438 * 19 13 12 21 21 H 0.97000 * 119.99283 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47111 * 60.00156 * 9 7 2 23 23 H 1.08998 * 109.47162 * 300.00048 * 9 7 2 24 24 H 1.08998 * 109.47205 * 60.00062 * 10 9 7 25 25 H 1.09003 * 109.47505 * 300.00144 * 10 9 7 26 26 H 1.08998 * 109.47103 * 59.99335 * 12 11 10 27 27 H 1.09004 * 109.46857 * 300.00003 * 12 11 10 28 28 H 1.08002 * 119.98459 * 0.02562 * 14 13 12 29 29 H 1.07992 * 120.00056 * 179.70138 * 15 14 13 30 30 H 1.08002 * 120.01552 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 16 1.3381 -5.2331 -0.0013 12 6 2.6646 -6.4703 -0.0020 13 6 2.0630 -7.8519 -0.0020 14 6 1.7826 -8.4837 1.1952 15 6 1.2366 -9.7532 1.1961 16 6 0.9649 -10.3905 -0.0019 17 17 0.2783 -11.9851 -0.0007 18 6 1.2403 -9.7570 -1.2000 19 6 1.7865 -8.4857 -1.2002 20 17 2.1318 -7.6894 -2.7036 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.8718 -3.6044 0.8894 25 1 2.8718 -3.6045 -0.8905 26 1 3.2809 -6.3427 0.8879 27 1 3.2808 -6.3419 -0.8920 28 1 1.9945 -7.9867 2.1304 29 1 1.0223 -10.2482 2.1316 30 1 1.0280 -10.2538 -2.1352 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058263047.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:29 Heat of formation + Delta-G solvation = -10.628485 kcal Electronic energy + Delta-G solvation = -15186.409571 eV Core-core repulsion = 12351.748538 eV Total energy + Delta-G solvation = -2834.661033 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.78139 -37.01511 -36.46695 -33.69868 -32.90011 -31.18134 -30.87947 -27.23661 -25.22110 -23.24924 -22.09382 -20.95906 -17.62217 -16.53093 -16.36848 -15.90931 -15.52343 -14.57332 -14.47416 -14.21577 -13.96961 -13.85341 -13.25741 -12.96927 -12.49623 -12.34262 -11.92633 -11.86224 -11.54544 -11.25860 -11.23217 -11.02609 -10.97554 -10.64097 -10.20656 -9.72439 -9.67237 -9.19410 -9.09293 -8.72015 -8.43069 -7.17316 -6.07053 -4.11904 0.57967 0.81920 1.60114 2.07828 2.17428 3.14356 3.29438 3.30426 3.34338 3.36584 4.37046 4.39942 4.41549 4.62204 4.84031 5.03455 5.21872 5.28398 5.41129 5.54981 5.66644 5.81568 5.96833 6.02953 6.15398 6.26656 6.70409 7.54807 7.63563 7.88883 8.25880 8.92840 9.51995 11.03666 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.035927 B = 0.002973 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.162924 B = 9414.965893 C = 9751.663223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.039 3.961 10 C -0.061 4.061 11 S -0.264 6.264 12 C -0.064 4.064 13 C -0.046 4.046 14 C -0.079 4.079 15 C -0.105 4.105 16 C -0.027 4.027 17 Cl -0.063 7.063 18 C -0.103 4.103 19 C -0.013 4.013 20 Cl -0.044 7.044 21 H 0.263 0.737 22 H 0.027 0.973 23 H 0.026 0.974 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.247 -22.549 0.087 22.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.209 4.209 11 S -0.034 6.034 12 C -0.211 4.211 13 C -0.048 4.048 14 C -0.099 4.099 15 C -0.124 4.124 16 C -0.054 4.054 17 Cl -0.034 7.034 18 C -0.123 4.123 19 C -0.042 4.042 20 Cl -0.015 7.015 21 H 0.073 0.927 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.163 0.837 29 H 0.158 0.842 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.975 -22.634 -0.057 22.829 hybrid contribution 1.673 1.055 -0.165 1.985 sum 4.647 -21.579 -0.222 22.075 Atomic orbital electron populations 1.69965 1.06072 1.27000 1.49842 1.25011 0.94898 0.99289 0.95026 0.86581 0.79529 0.82784 0.78667 1.20147 1.21151 1.20150 1.21054 0.92956 0.90250 1.51970 0.92502 1.18890 0.93386 0.89173 0.98558 1.23732 1.01513 0.92433 1.03211 1.87183 1.15718 1.02430 1.98040 1.22330 0.99970 0.92681 1.06167 1.19332 0.98785 0.94895 0.91830 1.21018 0.97333 0.93812 0.97786 1.21121 0.99089 0.95024 0.97163 1.20735 1.02003 0.88161 0.94537 1.98381 1.83228 1.22918 1.98922 1.20850 0.99835 0.93467 0.98109 1.20650 1.02154 0.93497 0.87867 1.98403 1.93176 1.79516 1.30391 0.92699 0.95504 0.95550 0.91307 0.91296 0.88966 0.88755 0.83702 0.84151 0.83822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.00 4.98 -27.88 -0.14 0.86 16 10 C -0.06 -1.25 5.88 37.16 0.22 -1.03 16 11 S -0.26 -4.74 21.72 -107.50 -2.33 -7.08 16 12 C -0.06 -0.86 5.67 36.00 0.20 -0.66 16 13 C -0.05 -0.56 5.14 -104.58 -0.54 -1.10 16 14 C -0.08 -0.81 9.70 -39.59 -0.38 -1.20 16 15 C -0.11 -0.97 9.83 -39.54 -0.39 -1.36 16 16 C -0.03 -0.26 6.32 -39.50 -0.25 -0.51 16 17 Cl -0.06 -0.56 28.96 -51.86 -1.50 -2.07 16 18 C -0.10 -1.08 9.62 -39.51 -0.38 -1.46 16 19 C -0.01 -0.15 6.31 -39.50 -0.25 -0.40 16 20 Cl -0.04 -0.55 27.30 -51.86 -1.42 -1.96 16 21 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 22 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 25 H 0.07 1.37 8.14 -51.92 -0.42 0.94 16 26 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 27 H 0.09 1.24 6.90 -51.92 -0.36 0.88 16 28 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 30 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 307.92 15.07 4.64 4.64 Total: -1.00 -29.54 307.92 -10.49 -40.03 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -3.28 Total: -3.93 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -2.32 Total: -20.09 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -4.74 SS G_CDS: -2.33 Total: -7.08 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -2.92 Total: -4.03 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.54 -10.49 -40.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058263047.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.405 kcal (2) G-P(sol) polarization free energy of solvation -29.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds