Wall clock time and date at job start Tue Mar 31 2020 06:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00239 * 2 1 4 4 H 1.48494 * 109.47309 * 239.99977 * 3 2 1 5 5 H 1.48496 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46797 * 119.99990 * 3 2 1 7 7 C 1.37878 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00396 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99731 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46960 * 180.02562 * 9 7 2 11 11 S 1.81396 * 109.47322 * 180.02562 * 10 9 7 12 12 C 1.81396 * 103.00506 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47434 * 179.97438 * 12 11 10 14 14 C 1.38249 * 119.99590 * 270.25226 * 13 12 11 15 15 C 1.38191 * 120.03041 * 180.29819 * 14 13 12 16 16 C 1.38386 * 120.00945 * 359.72592 * 15 14 13 17 17 Cl 1.73606 * 120.00614 * 180.02562 * 16 15 14 18 18 C 1.38306 * 119.99041 * 0.02562 * 16 15 14 19 19 C 1.38337 * 119.99277 * 89.99909 * 13 12 11 20 20 Cl 1.73599 * 120.00976 * 359.97438 * 19 13 12 21 21 H 0.97000 * 119.99283 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47111 * 60.00156 * 9 7 2 23 23 H 1.08998 * 109.47162 * 300.00048 * 9 7 2 24 24 H 1.08998 * 109.47205 * 60.00062 * 10 9 7 25 25 H 1.09003 * 109.47505 * 300.00144 * 10 9 7 26 26 H 1.08998 * 109.47103 * 59.99335 * 12 11 10 27 27 H 1.09004 * 109.46857 * 300.00003 * 12 11 10 28 28 H 1.08002 * 119.98459 * 0.02562 * 14 13 12 29 29 H 1.07992 * 120.00056 * 179.70138 * 15 14 13 30 30 H 1.08002 * 120.01552 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 16 1.3381 -5.2331 -0.0013 12 6 2.6646 -6.4703 -0.0020 13 6 2.0630 -7.8519 -0.0020 14 6 1.7826 -8.4837 1.1952 15 6 1.2366 -9.7532 1.1961 16 6 0.9649 -10.3905 -0.0019 17 17 0.2783 -11.9851 -0.0007 18 6 1.2403 -9.7570 -1.2000 19 6 1.7865 -8.4857 -1.2002 20 17 2.1318 -7.6894 -2.7036 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.8718 -3.6044 0.8894 25 1 2.8718 -3.6045 -0.8905 26 1 3.2809 -6.3427 0.8879 27 1 3.2808 -6.3419 -0.8920 28 1 1.9945 -7.9867 2.1304 29 1 1.0223 -10.2482 2.1316 30 1 1.0280 -10.2538 -2.1352 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058263047.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:29 Heat of formation + Delta-G solvation = -24.337939 kcal Electronic energy + Delta-G solvation = -15187.004057 eV Core-core repulsion = 12351.748538 eV Total energy + Delta-G solvation = -2835.255519 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.60354 -37.82017 -37.32496 -35.76691 -33.79961 -32.89543 -31.98035 -28.25289 -27.20218 -24.05456 -23.41626 -22.47232 -18.66511 -18.44669 -17.23647 -17.13338 -16.51921 -16.47107 -15.59924 -15.52930 -15.17250 -14.74917 -14.63426 -14.07667 -13.98578 -13.53533 -13.24178 -13.05747 -12.91860 -12.70880 -12.47788 -12.14633 -12.09020 -11.99643 -11.92192 -11.66243 -11.34953 -10.84059 -10.59624 -10.01393 -9.63468 -8.61004 -8.22561 -6.36198 -0.32930 0.02183 0.78971 0.92535 1.23715 1.41391 1.44438 1.52588 1.73767 2.40683 2.45254 3.10674 3.46820 3.55988 3.86800 4.01947 4.20469 4.28128 4.32298 4.39738 4.56163 4.66157 4.84006 4.89450 5.03535 5.19515 5.38911 5.48541 5.50847 5.74390 6.11603 6.78208 7.33318 8.88953 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.035927 B = 0.002973 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.162924 B = 9414.965893 C = 9751.663223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.046 3.954 10 C -0.051 4.051 11 S -0.294 6.294 12 C -0.045 4.045 13 C -0.066 4.066 14 C -0.077 4.077 15 C -0.100 4.100 16 C -0.027 4.027 17 Cl -0.053 7.053 18 C -0.107 4.107 19 C -0.023 4.023 20 Cl -0.057 7.057 21 H 0.265 0.735 22 H -0.006 1.006 23 H -0.003 1.003 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.163 0.837 29 H 0.166 0.834 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.565 -23.605 0.854 24.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.007 3.993 10 C -0.199 4.199 11 S -0.064 6.064 12 C -0.192 4.192 13 C -0.068 4.068 14 C -0.097 4.097 15 C -0.119 4.119 16 C -0.055 4.055 17 Cl -0.024 7.024 18 C -0.127 4.127 19 C -0.052 4.052 20 Cl -0.027 7.027 21 H 0.074 0.926 22 H 0.012 0.988 23 H 0.015 0.985 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.131 0.869 27 H 0.114 0.886 28 H 0.181 0.819 29 H 0.184 0.816 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.304 -23.694 0.710 24.092 hybrid contribution 1.215 1.177 -0.388 1.736 sum 5.520 -22.517 0.322 23.186 Atomic orbital electron populations 1.70113 1.07978 1.28097 1.50951 1.26021 0.95770 1.03521 0.94388 0.85417 0.78186 0.77611 0.79344 1.19048 1.20913 1.18833 1.21533 0.93721 0.91384 1.51590 0.91409 1.18652 0.93679 0.91429 0.95505 1.23345 1.00181 0.92387 1.03973 1.87210 1.18391 1.02646 1.98160 1.22324 0.98093 0.91504 1.07305 1.19337 1.00392 0.94395 0.92700 1.21268 0.96518 0.94121 0.97765 1.21421 0.97858 0.94584 0.98002 1.20889 1.01422 0.88586 0.94606 1.98390 1.82988 1.22104 1.98904 1.20995 0.99556 0.93066 0.99044 1.20779 1.02899 0.94128 0.87417 1.98397 1.93325 1.79831 1.31188 0.92586 0.98792 0.98450 0.90119 0.90799 0.86883 0.88612 0.81920 0.81614 0.82742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.05 2.44 4.98 29.85 0.15 2.59 16 10 C -0.05 -2.10 5.88 71.98 0.42 -1.68 16 11 S -0.29 -10.54 21.72 -56.49 -1.23 -11.76 16 12 C -0.05 -1.14 5.67 71.23 0.40 -0.74 16 13 C -0.07 -1.49 5.14 -19.84 -0.10 -1.59 16 14 C -0.08 -1.37 9.70 22.26 0.22 -1.16 16 15 C -0.10 -1.56 9.83 22.29 0.22 -1.34 16 16 C -0.03 -0.47 6.32 22.32 0.14 -0.33 16 17 Cl -0.05 -0.82 28.96 -2.72 -0.08 -0.90 16 18 C -0.11 -2.07 9.62 22.32 0.21 -1.86 16 19 C -0.02 -0.53 6.31 22.32 0.14 -0.39 16 20 Cl -0.06 -1.38 27.30 -2.72 -0.07 -1.46 16 21 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 22 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 23 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 24 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 25 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 26 H 0.11 2.38 8.09 -2.39 -0.02 2.36 16 27 H 0.10 2.40 6.90 -2.39 -0.02 2.39 16 28 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 29 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 30 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -64.45 307.92 4.58 -59.88 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: 1.14 Total: 1.50 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 2.50 Total: -36.24 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.28 Total: -56.66 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -10.54 SS G_CDS: -1.23 Total: -11.76 kcal Atomic # 17 Polarization: -2.20 SS G_CDS: -0.15 Total: -2.36 kcal Total: -64.45 4.58 -59.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058263047.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.538 kcal (2) G-P(sol) polarization free energy of solvation -64.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds