Wall clock time and date at job start Tue Mar 31 2020 06:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00117 * 2 1 4 4 H 1.48494 * 109.46962 * 269.99780 * 3 2 1 5 5 H 1.48505 * 109.47045 * 29.99373 * 3 2 1 6 6 H 1.48502 * 109.47301 * 149.99386 * 3 2 1 7 7 C 1.37879 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00165 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99959 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47326 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.47171 * 180.02562 * 10 9 7 12 12 C 1.81403 * 103.00047 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47169 * 180.02562 * 12 11 10 14 14 C 1.38264 * 119.97788 * 270.01994 * 13 12 11 15 15 C 1.38212 * 120.03625 * 180.02562 * 14 13 12 16 16 C 1.38344 * 119.99792 * 359.95605 * 15 14 13 17 17 Cl 1.73605 * 120.01708 * 180.29711 * 16 15 14 18 18 C 1.38445 * 119.96254 * 0.02562 * 16 15 14 19 19 Cl 1.73601 * 120.01534 * 180.02562 * 18 16 15 20 20 C 1.38196 * 119.98121 * 90.00438 * 13 12 11 21 21 H 0.96998 * 119.99875 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47132 * 60.00485 * 9 7 2 23 23 H 1.09004 * 109.47160 * 300.00986 * 9 7 2 24 24 H 1.09002 * 109.47168 * 60.00742 * 10 9 7 25 25 H 1.09004 * 109.47594 * 300.00460 * 10 9 7 26 26 H 1.09008 * 109.47107 * 60.00232 * 12 11 10 27 27 H 1.09002 * 109.47191 * 300.00115 * 12 11 10 28 28 H 1.07999 * 119.98547 * 0.02562 * 14 13 12 29 29 H 1.08000 * 119.99868 * 180.02562 * 15 14 13 30 30 H 1.08002 * 120.00416 * 0.02562 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0010 11 16 5.8355 -2.6365 0.0025 12 6 6.2436 -4.4041 0.0013 13 6 7.7410 -4.5739 0.0030 14 6 8.4290 -4.6502 -1.1938 15 6 9.8023 -4.8065 -1.1937 16 6 10.4893 -4.8858 0.0045 17 17 12.2151 -5.0743 0.0053 18 6 9.8004 -4.8089 1.2029 19 17 10.6611 -4.9075 2.7073 20 6 8.4257 -4.6529 1.2009 21 1 -0.4850 0.8400 -0.0004 22 1 3.8745 -0.6802 0.8912 23 1 3.8752 -0.6803 -0.8888 24 1 3.6586 -3.1502 -0.8893 25 1 3.6578 -3.1507 0.8907 26 1 5.8254 -4.8730 -0.8895 27 1 5.8240 -4.8744 0.8906 28 1 7.8931 -4.5877 -2.1294 29 1 10.3391 -4.8657 -2.1289 30 1 7.8877 -4.5934 2.1354 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058263060.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:53 Heat of formation + Delta-G solvation = -8.588247 kcal Electronic energy + Delta-G solvation = -15079.982749 eV Core-core repulsion = 12245.410187 eV Total energy + Delta-G solvation = -2834.572561 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.82974 -36.92653 -36.80570 -33.76482 -32.88345 -31.28689 -31.23582 -27.40233 -25.53418 -23.31445 -22.09176 -20.72689 -17.63783 -17.02748 -16.38725 -16.06459 -15.68457 -14.55785 -14.40833 -14.29518 -14.10509 -14.04460 -13.22967 -13.05814 -12.79376 -12.21349 -12.16779 -12.00326 -11.78673 -11.51477 -11.29917 -11.20029 -11.15103 -10.35801 -10.11468 -10.07584 -9.63308 -9.25815 -9.24141 -8.81823 -8.63383 -7.38441 -6.14291 -4.14730 0.50252 0.76799 1.53891 1.89241 2.02019 2.96067 3.25182 3.27383 3.35048 3.40043 4.26532 4.31918 4.38117 4.70422 4.78711 4.89325 5.13189 5.19735 5.38082 5.46354 5.59350 5.70863 5.80280 5.92311 6.06479 6.24624 6.46794 7.05566 7.17819 7.61637 8.38602 8.87008 9.46282 10.98374 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.032701 B = 0.002863 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.026925 B = 9778.592098 C = 9901.524385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.074 0.926 9 C 0.003 3.997 10 C -0.053 4.053 11 S -0.277 6.277 12 C -0.055 4.055 13 C -0.044 4.044 14 C -0.087 4.087 15 C -0.098 4.098 16 C -0.033 4.033 17 Cl -0.054 7.054 18 C -0.029 4.029 19 Cl -0.050 7.050 20 C -0.083 4.083 21 H 0.265 0.735 22 H 0.026 0.974 23 H 0.022 0.978 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.231 -12.620 -0.131 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.092 0.908 9 C -0.036 4.036 10 C -0.201 4.201 11 S -0.047 6.047 12 C -0.202 4.202 13 C -0.046 4.046 14 C -0.107 4.107 15 C -0.117 4.117 16 C -0.061 4.061 17 Cl -0.025 7.025 18 C -0.057 4.057 19 Cl -0.021 7.021 20 C -0.104 4.104 21 H 0.075 0.925 22 H 0.045 0.955 23 H 0.040 0.960 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 22.960 -11.659 0.016 25.751 hybrid contribution -0.304 -0.133 0.126 0.355 sum 22.656 -11.793 0.142 25.542 Atomic orbital electron populations 1.69895 1.06281 1.27173 1.50362 1.24964 0.94744 0.99190 0.94188 0.86788 0.80483 0.83431 0.78775 1.20060 1.21158 1.18777 1.20947 0.88409 0.94766 1.52053 0.90807 1.19364 0.97146 0.89489 0.97600 1.23528 0.87728 1.04669 1.04142 1.87149 1.12801 1.06679 1.98102 1.22262 0.93655 0.98131 1.06185 1.19364 0.94487 0.97994 0.92724 1.21165 0.93266 0.97719 0.98503 1.21020 0.94201 0.99952 0.96495 1.20786 0.85748 1.05989 0.93600 1.98386 1.09484 1.95719 1.98885 1.20702 0.92618 1.05762 0.86621 1.98392 1.76644 1.96472 1.30632 1.20954 0.91141 0.98895 0.99386 0.92485 0.95547 0.96003 0.90623 0.90606 0.88760 0.88892 0.83984 0.83839 0.83674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C 0.00 0.07 4.05 -27.89 -0.11 -0.04 16 10 C -0.05 -1.00 5.88 37.15 0.22 -0.78 16 11 S -0.28 -4.49 21.72 -107.50 -2.33 -6.83 16 12 C -0.06 -0.63 6.07 36.01 0.22 -0.41 16 13 C -0.04 -0.47 5.14 -104.63 -0.54 -1.01 16 14 C -0.09 -0.81 9.70 -39.58 -0.38 -1.20 16 15 C -0.10 -0.87 9.83 -39.55 -0.39 -1.26 16 16 C -0.03 -0.33 6.32 -39.47 -0.25 -0.58 16 17 Cl -0.05 -0.51 27.96 -51.86 -1.45 -1.96 16 18 C -0.03 -0.31 6.32 -39.47 -0.25 -0.56 16 19 Cl -0.05 -0.52 27.96 -51.86 -1.45 -1.97 16 20 C -0.08 -0.88 9.48 -39.56 -0.38 -1.26 16 21 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 23 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 24 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 25 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 26 H 0.09 0.96 8.09 -51.92 -0.42 0.54 16 27 H 0.09 0.98 8.08 -51.92 -0.42 0.56 16 28 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 29 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 305.45 15.07 4.60 4.60 Total: -1.00 -29.64 305.45 -10.12 -39.76 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: -3.31 Total: -4.06 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -2.29 Total: -19.96 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.77 Total: -26.37 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: -4.49 SS G_CDS: -2.33 Total: -6.83 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -2.90 Total: -3.93 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.64 -10.12 -39.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058263060.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.173 kcal (2) G-P(sol) polarization free energy of solvation -29.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds