Wall clock time and date at job start Tue Mar 31 2020 06:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47059 * 2 1 4 4 C 1.50706 * 109.46976 * 119.99979 * 2 1 3 5 5 H 1.08003 * 119.99862 * 114.91292 * 4 2 1 6 6 C 1.37876 * 119.99870 * 294.91006 * 4 2 1 7 7 N 1.31512 * 120.00019 * 351.06200 * 6 4 2 8 8 Si 1.86805 * 119.99812 * 171.06481 * 6 4 2 9 9 H 1.48506 * 109.46967 * 269.99957 * 8 6 4 10 10 H 1.48498 * 109.47161 * 29.99872 * 8 6 4 11 11 H 1.48498 * 109.46910 * 150.00035 * 8 6 4 12 12 N 1.46501 * 109.47150 * 239.99781 * 2 1 3 13 13 S 1.65597 * 119.99697 * 95.15851 * 12 2 1 14 14 O 1.42101 * 106.40078 * 177.31395 * 13 12 2 15 15 O 1.42099 * 106.40531 * 310.23633 * 13 12 2 16 16 C 1.76200 * 107.21809 * 63.77835 * 13 12 2 17 17 C 1.38165 * 120.42697 * 244.48093 * 16 13 12 18 18 N 1.31873 * 120.78157 * 179.97438 * 17 16 13 19 19 C 1.31912 * 121.75751 * 359.97438 * 18 17 16 20 20 C 1.38127 * 120.77625 * 0.02855 * 19 18 17 21 21 C 1.38776 * 120.42859 * 64.20232 * 16 13 12 22 22 Cl 1.73594 * 120.80479 * 0.02562 * 21 16 13 23 23 H 1.08998 * 109.46762 * 295.96475 * 1 2 3 24 24 H 1.08992 * 109.47393 * 55.96960 * 1 2 3 25 25 H 1.09004 * 109.46996 * 175.97104 * 1 2 3 26 26 H 0.96991 * 120.00263 * 354.65949 * 7 6 4 27 27 H 0.96994 * 120.00111 * 275.15930 * 12 2 1 28 28 H 1.08005 * 119.60942 * 359.97438 * 17 16 13 29 29 H 1.07998 * 119.60764 * 179.97438 * 19 18 17 30 30 H 1.07996 * 120.42281 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5838 -1.6340 1.1335 6 6 1.7879 -0.1813 2.4800 7 7 1.2745 1.0240 2.5948 8 14 2.1862 -1.1766 4.0099 9 1 1.0030 -1.9873 4.3949 10 1 3.3333 -2.0770 3.7300 11 1 2.5386 -0.2565 5.1210 12 7 2.0184 -0.6907 -1.1961 13 16 2.4159 0.1775 -2.5491 14 8 2.9076 -0.7599 -3.4972 15 8 1.3183 1.0420 -2.8082 16 6 3.7757 1.2139 -2.1230 17 6 3.6383 2.5886 -2.1348 18 7 4.6512 3.3708 -1.8166 19 6 5.8273 2.8799 -1.4762 20 6 6.0406 1.5157 -1.4416 21 6 4.9968 0.6597 -1.7656 22 17 5.2153 -1.0620 -1.7299 23 1 -0.3633 0.4499 0.9239 24 1 -0.3634 0.5751 -0.8516 25 1 -0.3633 -1.0252 -0.0722 26 1 1.1398 1.5710 1.8053 27 1 2.1088 -1.6564 -1.1956 28 1 2.6901 3.0278 -2.4078 29 1 6.6331 3.5527 -1.2224 30 1 7.0059 1.1200 -1.1625 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070588210.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:58 Heat of formation + Delta-G solvation = -47.513366 kcal Electronic energy + Delta-G solvation = -19430.512527 eV Core-core repulsion = 16185.835633 eV Total energy + Delta-G solvation = -3244.676895 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.23540 -37.11918 -36.71069 -35.80403 -35.53261 -32.42993 -32.29719 -31.68887 -28.33704 -24.95680 -24.24439 -23.85489 -21.25121 -19.36787 -18.08172 -17.69600 -17.16545 -16.86958 -16.48096 -15.09435 -14.59570 -14.42960 -14.05237 -14.01760 -13.75556 -13.20499 -12.93090 -12.40440 -12.22980 -12.07756 -11.80228 -11.75785 -11.50690 -11.11096 -10.98662 -10.90720 -10.73039 -10.46212 -10.21985 -9.87854 -9.79397 -9.51982 -9.15553 -8.48754 -8.41592 -6.52005 -4.26855 0.38811 0.78591 0.87549 1.72095 3.27737 3.35831 3.36842 3.47884 3.53501 3.98289 4.23102 4.36111 4.40796 4.58246 4.96116 5.05042 5.18601 5.36230 5.42036 5.56260 6.02919 6.25179 6.43293 6.68693 6.74272 7.24307 7.34613 7.59492 7.60043 8.00944 8.29453 8.65052 9.42448 10.83962 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.007568 C = 0.006910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.078639 B = 3698.738484 C = 4051.280487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.265 3.735 3 H 0.029 0.971 4 C -0.605 4.605 5 H 0.060 0.940 6 C 0.028 3.972 7 N -0.903 5.903 8 Si 1.068 2.932 9 H -0.285 1.285 10 H -0.288 1.288 11 H -0.285 1.285 12 N -1.087 6.087 13 S 2.690 3.310 14 O -0.963 6.963 15 O -0.957 6.957 16 C -0.723 4.723 17 C 0.212 3.788 18 N -0.494 5.494 19 C 0.160 3.840 20 C -0.188 4.188 21 C 0.107 3.893 22 Cl -0.021 7.021 23 H 0.068 0.932 24 H 0.035 0.965 25 H 0.045 0.955 26 H 0.272 0.728 27 H 0.413 0.587 28 H 0.183 0.817 29 H 0.172 0.828 30 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.412 0.227 -7.470 11.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.160 3.840 3 H 0.047 0.953 4 C -0.645 4.645 5 H 0.079 0.921 6 C -0.178 4.178 7 N -0.538 5.538 8 Si 0.896 3.104 9 H -0.212 1.212 10 H -0.214 1.214 11 H -0.211 1.211 12 N -0.849 5.849 13 S 2.774 3.226 14 O -0.952 6.952 15 O -0.947 6.947 16 C -0.808 4.808 17 C 0.054 3.946 18 N -0.203 5.203 19 C 0.003 3.997 20 C -0.209 4.209 21 C 0.071 3.929 22 Cl 0.009 6.991 23 H 0.086 0.914 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.248 0.752 28 H 0.200 0.800 29 H 0.189 0.811 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.843 1.189 -6.631 10.339 hybrid contribution 0.948 -1.189 -1.011 1.826 sum 8.790 0.000 -7.642 11.648 Atomic orbital electron populations 1.22301 0.98383 1.00576 1.00882 1.18607 0.91009 0.91978 0.82412 0.95339 1.22081 1.39965 1.11066 0.91351 0.92139 1.25758 0.93916 0.96983 1.01159 1.70761 1.40628 1.08453 1.33959 0.83567 0.76457 0.75123 0.75298 1.21193 1.21420 1.21059 1.55373 1.80197 1.18490 1.30843 1.02128 0.73553 0.73511 0.73359 1.93578 1.81399 1.60824 1.59447 1.93572 1.49112 1.68059 1.83924 1.32168 1.17576 1.11644 1.19450 1.22734 0.97930 0.87229 0.86741 1.67833 1.00344 1.39938 1.12191 1.23133 0.94607 0.92684 0.89261 1.22159 1.00049 0.94584 1.04074 1.20773 0.93355 0.87046 0.91702 1.98462 1.96985 1.07920 1.95758 0.91350 0.94622 0.93603 0.91674 0.75188 0.80033 0.81121 0.82888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 9.24 37.16 0.34 -3.31 16 2 C 0.26 6.09 2.39 -69.08 -0.17 5.92 16 3 H 0.03 0.70 7.05 -51.93 -0.37 0.33 16 4 C -0.61 -15.28 8.69 -34.44 -0.30 -15.58 16 5 H 0.06 1.51 7.83 -52.48 -0.41 1.10 16 6 C 0.03 0.73 5.18 -17.82 -0.09 0.64 16 7 N -0.90 -25.20 12.81 55.43 0.71 -24.49 16 8 Si 1.07 23.60 29.91 -169.99 -5.08 18.52 16 9 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 N -1.09 -21.31 5.31 -5.88 -0.03 -21.34 16 13 S 2.69 49.82 5.01 -107.50 -0.54 49.28 16 14 O -0.96 -18.42 16.68 -57.17 -0.95 -19.37 16 15 O -0.96 -19.22 16.37 -57.17 -0.94 -20.15 16 16 C -0.72 -12.48 5.67 -39.41 -0.22 -12.70 16 17 C 0.21 3.47 10.71 -17.56 -0.19 3.28 16 18 N -0.49 -7.54 10.36 -13.27 -0.14 -7.68 16 19 C 0.16 2.00 11.18 -17.56 -0.20 1.81 16 20 C -0.19 -2.44 9.94 -39.41 -0.39 -2.83 16 21 C 0.11 1.72 6.35 -39.17 -0.25 1.47 16 22 Cl -0.02 -0.33 26.84 -51.86 -1.39 -1.72 16 23 H 0.07 1.65 6.46 -51.93 -0.34 1.32 16 24 H 0.03 0.75 7.73 -51.93 -0.40 0.35 16 25 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.27 7.56 6.35 -40.82 -0.26 7.30 16 27 H 0.41 7.45 8.83 -34.47 -0.30 7.15 16 28 H 0.18 2.70 7.35 -52.48 -0.39 2.32 16 29 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 289.82 15.07 4.37 4.37 Total: -1.00 -30.83 289.82 -7.98 -38.82 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -2.53 Total: 5.07 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -1.46 Total: -21.31 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.54 Total: -53.51 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -1.89 Total: -39.52 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.08 Total: 18.52 kcal Atomic # 16 Polarization: 49.82 SS G_CDS: -0.54 Total: 49.28 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.39 Total: -1.72 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.83 -7.98 -38.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070588210.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.697 kcal (2) G-P(sol) polarization free energy of solvation -30.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds