Wall clock time and date at job start Tue Mar 31 2020 06:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47059 * 2 1 4 4 C 1.50706 * 109.46976 * 119.99979 * 2 1 3 5 5 H 1.08003 * 119.99862 * 114.91292 * 4 2 1 6 6 C 1.37876 * 119.99870 * 294.91006 * 4 2 1 7 7 N 1.31512 * 120.00019 * 351.06200 * 6 4 2 8 8 Si 1.86805 * 119.99812 * 171.06481 * 6 4 2 9 9 H 1.48506 * 109.46967 * 269.99957 * 8 6 4 10 10 H 1.48498 * 109.47161 * 29.99872 * 8 6 4 11 11 H 1.48498 * 109.46910 * 150.00035 * 8 6 4 12 12 N 1.46501 * 109.47150 * 239.99781 * 2 1 3 13 13 S 1.65597 * 119.99697 * 95.15851 * 12 2 1 14 14 O 1.42101 * 106.40078 * 177.31395 * 13 12 2 15 15 O 1.42099 * 106.40531 * 310.23633 * 13 12 2 16 16 C 1.76200 * 107.21809 * 63.77835 * 13 12 2 17 17 C 1.38165 * 120.42697 * 244.48093 * 16 13 12 18 18 N 1.31873 * 120.78157 * 179.97438 * 17 16 13 19 19 C 1.31912 * 121.75751 * 359.97438 * 18 17 16 20 20 C 1.38127 * 120.77625 * 0.02855 * 19 18 17 21 21 C 1.38776 * 120.42859 * 64.20232 * 16 13 12 22 22 Cl 1.73594 * 120.80479 * 0.02562 * 21 16 13 23 23 H 1.08998 * 109.46762 * 295.96475 * 1 2 3 24 24 H 1.08992 * 109.47393 * 55.96960 * 1 2 3 25 25 H 1.09004 * 109.46996 * 175.97104 * 1 2 3 26 26 H 0.96991 * 120.00263 * 354.65949 * 7 6 4 27 27 H 0.96994 * 120.00111 * 275.15930 * 12 2 1 28 28 H 1.08005 * 119.60942 * 359.97438 * 17 16 13 29 29 H 1.07998 * 119.60764 * 179.97438 * 19 18 17 30 30 H 1.07996 * 120.42281 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5838 -1.6340 1.1335 6 6 1.7879 -0.1813 2.4800 7 7 1.2745 1.0240 2.5948 8 14 2.1862 -1.1766 4.0099 9 1 1.0030 -1.9873 4.3949 10 1 3.3333 -2.0770 3.7300 11 1 2.5386 -0.2565 5.1210 12 7 2.0184 -0.6907 -1.1961 13 16 2.4159 0.1775 -2.5491 14 8 2.9076 -0.7599 -3.4972 15 8 1.3183 1.0420 -2.8082 16 6 3.7757 1.2139 -2.1230 17 6 3.6383 2.5886 -2.1348 18 7 4.6512 3.3708 -1.8166 19 6 5.8273 2.8799 -1.4762 20 6 6.0406 1.5157 -1.4416 21 6 4.9968 0.6597 -1.7656 22 17 5.2153 -1.0620 -1.7299 23 1 -0.3633 0.4499 0.9239 24 1 -0.3634 0.5751 -0.8516 25 1 -0.3633 -1.0252 -0.0722 26 1 1.1398 1.5710 1.8053 27 1 2.1088 -1.6564 -1.1956 28 1 2.6901 3.0278 -2.4078 29 1 6.6331 3.5527 -1.2224 30 1 7.0059 1.1200 -1.1625 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070588210.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:58 Heat of formation + Delta-G solvation = -70.077542 kcal Electronic energy + Delta-G solvation = -19431.490984 eV Core-core repulsion = 16185.835633 eV Total energy + Delta-G solvation = -3245.655351 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.37230 -38.55279 -38.04249 -37.57183 -37.07176 -34.21692 -33.56056 -32.81506 -30.13190 -26.93875 -25.40574 -25.02228 -23.09762 -20.82434 -19.57081 -19.28481 -18.60308 -18.14274 -17.85960 -16.69534 -15.81905 -15.65170 -15.60077 -15.48835 -15.20256 -14.98265 -14.22289 -14.06227 -13.81601 -13.50446 -13.33866 -13.25784 -12.98221 -12.85372 -12.72451 -12.51373 -12.29654 -12.13974 -11.92393 -11.14252 -11.05591 -10.84325 -10.62240 -10.47085 -10.19486 -8.58030 -6.32675 -0.85810 -0.60943 -0.27059 0.52752 1.58536 1.64165 1.81049 1.87864 2.23759 2.55680 2.59428 3.09634 3.16742 3.18967 3.50059 3.74173 3.88450 4.19394 4.26185 4.37952 4.52624 4.61808 4.83569 4.92056 5.19667 5.39710 5.49928 5.84097 6.18337 6.34374 6.47750 6.59195 7.43628 8.78289 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.007568 C = 0.006910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.078639 B = 3698.738484 C = 4051.280487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.269 3.731 3 H 0.014 0.986 4 C -0.606 4.606 5 H 0.063 0.937 6 C -0.018 4.018 7 N -0.929 5.929 8 Si 1.109 2.891 9 H -0.276 1.276 10 H -0.270 1.270 11 H -0.289 1.289 12 N -1.087 6.087 13 S 2.705 3.295 14 O -0.970 6.970 15 O -0.978 6.978 16 C -0.742 4.742 17 C 0.200 3.800 18 N -0.507 5.507 19 C 0.167 3.833 20 C -0.178 4.178 21 C 0.085 3.915 22 Cl -0.025 7.025 23 H 0.048 0.952 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.261 0.739 27 H 0.420 0.580 28 H 0.185 0.815 29 H 0.221 0.779 30 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.274 -0.006 -7.142 12.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.163 3.837 3 H 0.032 0.968 4 C -0.646 4.646 5 H 0.081 0.919 6 C -0.218 4.218 7 N -0.566 5.566 8 Si 0.932 3.068 9 H -0.202 1.202 10 H -0.195 1.195 11 H -0.215 1.215 12 N -0.849 5.849 13 S 2.792 3.208 14 O -0.960 6.960 15 O -0.968 6.968 16 C -0.830 4.830 17 C 0.041 3.959 18 N -0.217 5.217 19 C 0.011 3.989 20 C -0.199 4.199 21 C 0.049 3.951 22 Cl 0.005 6.995 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.255 0.745 28 H 0.201 0.799 29 H 0.237 0.763 30 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 9.677 0.915 -6.335 11.602 hybrid contribution 0.477 -1.056 -1.174 1.649 sum 10.154 -0.140 -7.509 12.630 Atomic orbital electron populations 1.22221 0.98241 1.01030 1.00140 1.18351 0.91072 0.91278 0.82961 0.96850 1.22354 1.39188 1.10897 0.92112 0.91911 1.26960 0.93519 0.97122 1.04194 1.70865 1.42787 1.09497 1.33466 0.83024 0.77185 0.74261 0.72339 1.20213 1.19516 1.21542 1.55207 1.80706 1.18948 1.30021 1.01437 0.73451 0.73128 0.72735 1.93563 1.81552 1.61412 1.59461 1.93537 1.50723 1.68354 1.84194 1.31837 1.17552 1.11742 1.21887 1.22864 0.98754 0.87097 0.87163 1.67904 1.01136 1.39987 1.12658 1.24011 0.94606 0.93442 0.86843 1.22665 1.00674 0.94411 1.02108 1.21079 0.93929 0.87364 0.92718 1.98455 1.96935 1.08305 1.95845 0.93298 0.93903 0.92701 0.92844 0.74474 0.79860 0.76281 0.79146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.12 9.24 71.98 0.67 -6.46 16 2 C 0.27 12.43 2.39 44.25 0.11 12.54 16 3 H 0.01 0.68 7.05 -2.39 -0.02 0.66 16 4 C -0.61 -30.33 8.69 25.60 0.22 -30.11 16 5 H 0.06 3.06 7.83 -2.91 -0.02 3.03 16 6 C -0.02 -0.92 5.18 84.65 0.44 -0.48 16 7 N -0.93 -52.28 12.81 21.45 0.27 -52.01 16 8 Si 1.11 46.61 29.91 68.60 2.05 48.67 16 9 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 10 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 12 N -1.09 -42.47 5.31 -172.51 -0.92 -43.39 16 13 S 2.71 100.25 5.01 -56.49 -0.28 99.97 16 14 O -0.97 -36.83 16.68 -128.00 -2.14 -38.96 16 15 O -0.98 -39.76 16.37 -128.00 -2.10 -41.85 16 16 C -0.74 -25.23 5.67 22.38 0.13 -25.10 16 17 C 0.20 6.44 10.71 84.67 0.91 7.34 16 18 N -0.51 -14.59 10.36 -195.90 -2.03 -16.62 16 19 C 0.17 3.62 11.18 84.65 0.95 4.56 16 20 C -0.18 -4.06 9.94 22.38 0.22 -3.84 16 21 C 0.08 2.59 6.35 22.54 0.14 2.74 16 22 Cl -0.02 -0.75 26.84 -2.72 -0.07 -0.82 16 23 H 0.05 2.40 6.46 -2.39 -0.02 2.38 16 24 H 0.04 1.84 7.73 -2.39 -0.02 1.82 16 25 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 26 H 0.26 14.84 6.35 -92.71 -0.59 14.26 16 27 H 0.42 14.98 8.83 -96.75 -0.85 14.12 16 28 H 0.18 5.58 7.35 -2.91 -0.02 5.56 16 29 H 0.22 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.19 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -65.36 289.82 -0.91 -66.27 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.52 Total: 17.55 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 3.78 Total: -38.80 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -2.67 Total: -112.02 kcal Atomic # 8 Polarization: -76.59 SS G_CDS: -4.23 Total: -80.82 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.05 Total: 48.67 kcal Atomic # 16 Polarization: 100.25 SS G_CDS: -0.28 Total: 99.97 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.07 Total: -0.82 kcal Total: -65.36 -0.91 -66.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070588210.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.804 kcal (2) G-P(sol) polarization free energy of solvation -65.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds