Wall clock time and date at job start Tue Mar 31 2020 06:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99955 * 2 1 4 4 H 1.48505 * 109.46885 * 239.99819 * 3 2 1 5 5 H 1.48504 * 109.47281 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47209 * 120.00115 * 3 2 1 7 7 C 1.37869 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00143 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47376 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47506 * 179.97438 * 10 9 7 12 12 S 1.65592 * 120.00317 * 164.99724 * 11 10 9 13 13 O 1.42097 * 106.40344 * 311.46114 * 12 11 10 14 14 O 1.42100 * 106.40499 * 178.54216 * 12 11 10 15 15 C 1.76205 * 107.21871 * 65.00125 * 12 11 10 16 16 C 1.38168 * 120.42735 * 115.00346 * 15 12 11 17 17 N 1.31873 * 120.77409 * 180.30300 * 16 15 12 18 18 C 1.31908 * 121.76179 * 359.42367 * 17 16 15 19 19 C 1.38122 * 120.77726 * 0.57002 * 18 17 16 20 20 C 1.38775 * 120.42660 * 295.01978 * 15 12 11 21 21 Cl 1.73600 * 120.80380 * 359.96117 * 20 15 12 22 22 H 0.97007 * 119.99911 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47194 * 59.99353 * 9 7 2 24 24 H 1.09002 * 109.46565 * 299.99558 * 9 7 2 25 25 H 1.09004 * 109.47476 * 59.99026 * 10 9 7 26 26 H 1.09001 * 109.47189 * 299.99973 * 10 9 7 27 27 H 0.97000 * 119.99516 * 345.00145 * 11 10 9 28 28 H 1.08002 * 119.60902 * 0.02562 * 16 15 12 29 29 H 1.08000 * 119.61446 * 180.31877 * 18 17 16 30 30 H 1.07998 * 120.42906 * 179.74255 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5127 -4.9308 0.0024 12 16 2.2985 -6.3407 -0.3674 13 8 3.0287 -6.0920 -1.5608 14 8 1.3366 -7.3797 -0.2471 15 6 3.4929 -6.6196 0.8977 16 6 3.3806 -7.7107 1.7379 17 7 4.2672 -7.9227 2.6907 18 6 5.2954 -7.1170 2.8742 19 6 5.4741 -6.0057 2.0737 20 6 4.5583 -5.7458 1.0634 21 17 4.7415 -4.3617 0.0318 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5566 0.8904 25 1 2.8713 -3.6039 0.8922 26 1 2.8726 -3.6047 -0.8877 27 1 0.5674 -4.9449 0.2195 28 1 2.5545 -8.3956 1.6155 29 1 6.0036 -7.3264 3.6622 30 1 6.3157 -5.3475 2.2316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070588219.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:55 Heat of formation + Delta-G solvation = -36.746498 kcal Electronic energy + Delta-G solvation = -18832.744781 eV Core-core repulsion = 15588.534772 eV Total energy + Delta-G solvation = -3244.210008 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.47359 -37.44408 -36.86552 -35.75754 -35.46515 -32.80904 -32.59467 -31.91848 -29.20744 -24.62918 -24.45275 -24.07330 -21.36604 -19.57998 -18.42223 -17.60057 -17.04641 -16.84754 -16.29409 -15.73444 -14.84974 -14.64122 -14.51926 -14.36158 -14.19566 -13.86102 -13.07764 -12.82303 -12.32390 -12.04962 -12.02043 -11.87399 -11.77451 -11.32806 -11.14240 -10.83741 -10.59746 -10.49745 -10.15906 -9.99055 -9.75187 -9.40295 -9.26969 -8.91800 -8.43839 -6.11305 -4.15002 0.13109 0.50170 0.64224 1.57787 3.01109 3.24967 3.27337 3.32483 3.34735 3.69464 3.99942 4.13180 4.34624 4.38154 4.73757 4.82577 5.12863 5.21993 5.25494 5.34717 5.67183 6.02517 6.09308 6.37375 6.66449 7.31344 7.36265 7.51031 7.60413 7.86334 8.24009 8.90085 9.49651 11.00037 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.005388 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.748428 B = 5195.947335 C = 5841.232951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.017 3.983 10 C 0.110 3.890 11 N -1.103 6.103 12 S 2.695 3.305 13 O -0.941 6.941 14 O -0.963 6.963 15 C -0.729 4.729 16 C 0.211 3.789 17 N -0.495 5.495 18 C 0.160 3.840 19 C -0.186 4.186 20 C 0.090 3.910 21 Cl 0.001 6.999 22 H 0.263 0.737 23 H 0.027 0.973 24 H 0.024 0.976 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.420 0.580 28 H 0.184 0.816 29 H 0.173 0.827 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.471 -12.983 4.779 16.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.022 4.022 10 C -0.015 4.015 11 N -0.867 5.867 12 S 2.778 3.222 13 O -0.931 6.931 14 O -0.953 6.953 15 C -0.814 4.814 16 C 0.052 3.948 17 N -0.205 5.205 18 C 0.003 3.997 19 C -0.207 4.207 20 C 0.054 3.946 21 Cl 0.031 6.969 22 H 0.073 0.927 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.255 0.745 28 H 0.201 0.799 29 H 0.190 0.810 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.338 -13.991 4.504 17.414 hybrid contribution 0.613 2.039 0.235 2.142 sum 9.952 -11.952 4.739 16.259 Atomic orbital electron populations 1.69945 1.06060 1.27004 1.50004 1.24981 0.94868 0.99294 0.94996 0.86624 0.79595 0.82896 0.78715 1.20095 1.21183 1.20161 1.20996 0.93030 0.90440 1.51801 0.92458 1.19329 0.94043 0.90524 0.98279 1.22345 0.96072 0.82577 1.00482 1.55450 1.21426 1.21880 1.87897 1.02089 0.73292 0.72851 0.73924 1.93629 1.73425 1.84831 1.41203 1.93564 1.59344 1.55552 1.86862 1.32211 1.18064 1.06186 1.24958 1.22737 0.95149 0.91321 0.85620 1.67858 1.03453 1.29986 1.19189 1.23179 0.93180 0.88081 0.95216 1.22253 1.01108 1.00778 0.96526 1.21069 0.93110 0.88744 0.91693 1.98551 1.96628 1.37641 1.64071 0.92732 0.95486 0.95744 0.92489 0.90951 0.74457 0.79916 0.81026 0.82626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -13.96 9.11 -34.44 -0.31 -14.28 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.41 5.11 -27.88 -0.14 0.27 16 10 C 0.11 2.12 4.07 -4.04 -0.02 2.11 16 11 N -1.10 -18.07 6.00 -10.61 -0.06 -18.13 16 12 S 2.69 41.71 5.44 -107.50 -0.58 41.13 16 13 O -0.94 -16.92 16.10 -57.17 -0.92 -17.84 16 14 O -0.96 -15.56 17.00 -57.17 -0.97 -16.53 16 15 C -0.73 -10.02 5.91 -39.41 -0.23 -10.25 16 16 C 0.21 2.61 10.71 -17.56 -0.19 2.42 16 17 N -0.50 -5.85 10.36 -13.27 -0.14 -5.99 16 18 C 0.16 1.52 11.18 -17.56 -0.20 1.32 16 19 C -0.19 -1.91 9.94 -39.41 -0.39 -2.31 16 20 C 0.09 1.20 6.14 -39.17 -0.24 0.96 16 21 Cl 0.00 0.02 21.03 -51.86 -1.09 -1.07 16 22 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 1.04 6.14 -51.93 -0.32 0.72 16 26 H 0.07 1.43 5.99 -51.93 -0.31 1.12 16 27 H 0.42 6.24 8.65 -34.46 -0.30 5.94 16 28 H 0.18 1.93 7.35 -52.49 -0.39 1.54 16 29 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 284.27 15.07 4.28 4.28 Total: -1.00 -32.44 284.27 -8.13 -40.58 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -2.55 Total: 0.89 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -1.82 Total: -18.18 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.54 Total: -49.06 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -1.89 Total: -34.37 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 41.71 SS G_CDS: -0.58 Total: 41.13 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -1.09 Total: -1.07 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.44 -8.13 -40.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070588219.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.833 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds