Wall clock time and date at job start Tue Mar 31 2020 05:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.53001 * 109.47528 * 293.95568 * 3 2 1 5 5 C 1.52995 * 109.47341 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47029 * 180.02562 * 5 4 3 7 7 H 1.08004 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00004 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00263 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00053 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.47461 * 89.99691 * 10 8 6 12 12 H 1.48497 * 109.47176 * 210.00236 * 10 8 6 13 13 H 1.48509 * 109.47146 * 329.99661 * 10 8 6 14 14 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 15 15 C 1.50695 * 109.46944 * 66.04457 * 14 2 1 16 16 C 1.38233 * 120.00367 * 269.72185 * 15 14 2 17 17 C 1.38234 * 120.00091 * 179.76721 * 16 15 14 18 18 C 1.38241 * 119.99888 * 0.51277 * 17 16 15 19 19 C 1.50697 * 119.99960 * 179.72495 * 18 17 16 20 20 C 1.53001 * 109.47256 * 240.02292 * 19 18 17 21 21 C 1.53005 * 109.47084 * 0.02562 * 19 18 17 22 22 C 1.52997 * 109.47373 * 120.02210 * 19 18 17 23 23 C 1.38235 * 120.00084 * 359.74362 * 18 17 16 24 24 C 1.38236 * 119.99755 * 0.02562 * 23 18 17 25 25 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 26 26 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 28 28 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 29 29 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 30 30 H 1.09001 * 109.46792 * 299.99900 * 4 3 2 31 31 H 1.09001 * 109.46841 * 59.99659 * 4 3 2 32 32 H 1.09001 * 109.46899 * 299.99594 * 5 4 3 33 33 H 1.08991 * 109.47614 * 59.99853 * 5 4 3 34 34 H 0.96998 * 120.00359 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.46783 * 186.04686 * 14 2 1 36 36 H 1.09005 * 109.46676 * 306.04728 * 14 2 1 37 37 H 1.07999 * 119.99639 * 0.02562 * 16 15 14 38 38 H 1.08001 * 120.00383 * 180.23398 * 17 16 15 39 39 H 1.09004 * 109.47077 * 59.99122 * 20 19 18 40 40 H 1.08995 * 109.47481 * 179.97438 * 20 19 18 41 41 H 1.09005 * 109.46711 * 300.00078 * 20 19 18 42 42 H 1.09002 * 109.47054 * 60.00720 * 21 19 18 43 43 H 1.09004 * 109.46877 * 180.02562 * 21 19 18 44 44 H 1.08998 * 109.46872 * 300.00199 * 21 19 18 45 45 H 1.08997 * 109.47274 * 59.99468 * 22 19 18 46 46 H 1.08997 * 109.47144 * 180.02562 * 22 19 18 47 47 H 1.09005 * 109.46914 * 299.99913 * 22 19 18 48 48 H 1.07993 * 120.00237 * 179.97438 * 23 18 17 49 49 H 1.08005 * 119.99692 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1802 3.4856 -1.3184 6 6 1.8211 4.1616 -2.6166 7 1 1.2581 3.6259 -3.3667 8 6 2.2113 5.4638 -2.8468 9 7 1.8983 6.0535 -3.9799 10 14 3.1844 6.3905 -1.5492 11 1 4.6368 6.1777 -1.7738 12 1 2.8765 7.8403 -1.6411 13 1 2.8134 5.8902 -0.2011 14 6 1.9955 -0.7660 1.1376 15 6 1.6370 -2.2204 0.9729 16 6 0.4539 -2.7045 1.4989 17 6 0.1227 -4.0376 1.3436 18 6 0.9798 -4.8889 0.6713 19 6 0.6217 -6.3435 0.5073 20 6 1.6959 -7.2107 1.1669 21 6 -0.7303 -6.6138 1.1707 22 6 0.5358 -6.6829 -0.9820 23 6 2.1654 -4.4059 0.1498 24 6 2.4942 -3.0718 0.3010 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.5611 1.9274 0.8310 29 1 3.0797 1.3444 0.1083 30 1 2.0658 1.5016 -2.1491 31 1 0.5471 2.0845 -1.4264 32 1 1.7462 4.0418 -0.4875 33 1 3.2645 3.4583 -1.2104 34 1 2.1731 6.9695 -4.1420 35 1 3.0798 -0.6611 1.1756 36 1 1.5611 -0.3872 2.0628 37 1 -0.2137 -2.0403 2.0277 38 1 -0.8034 -4.4151 1.7513 39 1 1.7572 -6.9688 2.2280 40 1 1.4367 -8.2627 1.0487 41 1 2.6591 -7.0180 0.6942 42 1 -1.4956 -5.9961 0.7007 43 1 -0.9891 -7.6661 1.0525 44 1 -0.6692 -6.3720 2.2318 45 1 1.4988 -6.4902 -1.4547 46 1 0.2764 -7.7349 -1.1006 47 1 -0.2296 -6.0651 -1.4519 48 1 2.8350 -5.0710 -0.3750 49 1 3.4207 -2.6945 -0.1061 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071016082.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:01 Heat of formation + Delta-G solvation = 0.787570 kcal Electronic energy + Delta-G solvation = -22524.425171 eV Core-core repulsion = 19450.281030 eV Total energy + Delta-G solvation = -3074.144141 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.15149 -37.95118 -36.24039 -33.70056 -31.83495 -31.22570 -30.41168 -27.71907 -27.53830 -27.30165 -26.90075 -24.18293 -22.40299 -22.03870 -20.85165 -19.89591 -19.35342 -16.77191 -16.57592 -15.72842 -15.49847 -15.22064 -14.80832 -14.54653 -14.40157 -14.08176 -13.93011 -13.64038 -13.48807 -13.30193 -12.91441 -12.63117 -12.33288 -12.19176 -12.00997 -11.98475 -11.90657 -11.77025 -11.51305 -11.38771 -11.33570 -11.20173 -10.92303 -10.73544 -10.68357 -10.65463 -9.88211 -9.64141 -9.56884 -9.13724 -8.93491 -8.63222 -8.50388 -8.07835 -6.00718 -3.98221 1.26034 1.37281 3.32665 3.39698 3.43495 3.61423 4.31093 4.34549 4.46617 4.48052 4.70404 4.81875 4.86839 4.94657 5.01278 5.21106 5.30179 5.31857 5.33099 5.37466 5.44527 5.45138 5.50385 5.56663 5.57177 5.61418 5.64443 5.69991 5.76371 5.82893 5.90152 5.94731 5.99260 6.00776 6.03939 6.13710 6.22038 6.39485 6.54108 6.57690 6.60698 6.62384 6.94816 6.95676 7.25948 7.30038 7.40298 7.50996 7.84086 8.58961 9.05079 9.61963 11.12891 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.035464 B = 0.002413 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.351220 B =11600.143683 C =11727.872390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.535 5.535 3 C 0.053 3.947 4 C -0.097 4.097 5 C -0.013 4.013 6 C -0.517 4.517 7 H 0.071 0.929 8 C 0.064 3.936 9 N -0.905 5.905 10 Si 0.881 3.119 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.266 1.266 14 C 0.090 3.910 15 C -0.074 4.074 16 C -0.112 4.112 17 C -0.124 4.124 18 C -0.075 4.075 19 C -0.030 4.030 20 C -0.138 4.138 21 C -0.144 4.144 22 C -0.139 4.139 23 C -0.117 4.117 24 C -0.096 4.096 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.021 0.979 28 H 0.028 0.972 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.013 0.987 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.118 0.882 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.334 -26.919 13.525 30.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.259 5.259 3 C -0.074 4.074 4 C -0.135 4.135 5 C -0.051 4.051 6 C -0.555 4.555 7 H 0.090 0.910 8 C -0.137 4.137 9 N -0.544 5.544 10 Si 0.708 3.292 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.191 1.191 14 C -0.037 4.037 15 C -0.074 4.074 16 C -0.131 4.131 17 C -0.141 4.141 18 C -0.075 4.075 19 C -0.030 4.030 20 C -0.195 4.195 21 C -0.201 4.201 22 C -0.196 4.196 23 C -0.135 4.135 24 C -0.114 4.114 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.136 0.864 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.157 -26.962 13.000 30.010 hybrid contribution 0.230 1.118 1.275 1.711 sum -1.928 -25.844 14.275 29.588 Atomic orbital electron populations 1.22492 0.87698 1.01612 1.01042 1.62059 1.07988 1.14595 1.41248 1.22356 0.99511 0.86425 0.99084 1.21468 1.00563 0.96782 0.94662 1.19555 0.95683 0.92248 0.97641 1.21153 1.35409 0.97799 1.01158 0.91037 1.25047 0.95756 0.97552 0.95302 1.69919 1.47142 1.13262 1.24100 0.86764 0.80657 0.78881 0.82876 1.20311 1.21459 1.19107 1.21071 1.00463 0.89826 0.92379 1.19771 0.94718 0.95119 0.97836 1.21043 0.96410 0.95432 1.00188 1.21090 0.99697 0.93295 1.00056 1.19751 0.94753 0.94719 0.98290 1.19491 0.95837 0.91447 0.96185 1.21885 0.98099 0.98884 1.00617 1.21959 0.96079 1.01496 1.00533 1.21890 1.02295 1.01164 0.94238 1.20930 0.96703 0.95471 1.00364 1.21012 0.99681 0.92978 0.97757 0.90624 0.91586 0.96077 0.95358 0.91274 0.92011 0.92817 0.96909 0.97097 0.92809 0.90122 0.94382 0.86537 0.85950 0.92577 0.92477 0.92406 0.92217 0.92495 0.92346 0.92361 0.92491 0.92389 0.86402 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.99 60.07 0.54 0.82 16 2 N -0.54 -8.01 4.75 -244.36 -1.16 -9.17 16 3 C 0.05 0.89 4.96 -3.83 -0.02 0.88 16 4 C -0.10 -1.98 5.08 -26.73 -0.14 -2.12 16 5 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 6 C -0.52 -15.09 9.66 -34.44 -0.33 -15.43 16 7 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 8 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 9 N -0.90 -28.40 13.96 55.43 0.77 -27.63 16 10 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 13 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 14 C 0.09 1.13 5.12 -4.98 -0.03 1.10 16 15 C -0.07 -0.87 4.88 -104.63 -0.51 -1.38 16 16 C -0.11 -1.21 7.92 -39.58 -0.31 -1.53 16 17 C -0.12 -1.22 8.98 -39.58 -0.36 -1.58 16 18 C -0.07 -0.72 4.76 -104.62 -0.50 -1.22 16 19 C -0.03 -0.22 0.85 -155.66 -0.13 -0.36 16 20 C -0.14 -0.93 8.29 37.16 0.31 -0.62 16 21 C -0.14 -0.95 7.13 37.16 0.27 -0.69 16 22 C -0.14 -1.02 8.29 37.16 0.31 -0.71 16 23 C -0.12 -1.19 8.71 -39.58 -0.34 -1.53 16 24 C -0.10 -1.09 9.70 -39.58 -0.38 -1.47 16 25 H 0.08 1.14 6.47 -51.93 -0.34 0.81 16 26 H 0.07 0.85 5.91 -51.93 -0.31 0.55 16 27 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.03 0.47 8.12 -51.92 -0.42 0.05 16 29 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.05 1.10 6.55 -51.93 -0.34 0.76 16 32 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 33 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 35 H 0.08 0.96 7.87 -51.93 -0.41 0.55 16 36 H 0.04 0.46 8.06 -51.93 -0.42 0.04 16 37 H 0.12 1.15 8.00 -52.49 -0.42 0.73 16 38 H 0.12 1.00 5.90 -52.49 -0.31 0.69 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.39 7.39 -51.93 -0.38 0.00 16 42 H 0.06 0.41 7.51 -51.93 -0.39 0.02 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.38 7.51 -51.93 -0.39 -0.01 16 45 H 0.06 0.43 7.39 -51.93 -0.38 0.05 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.12 1.02 7.10 -52.49 -0.37 0.65 16 49 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 377.60 15.07 5.69 5.69 Total: -1.00 -31.19 377.60 -10.24 -41.43 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -9.03 Total: -3.27 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -1.84 Total: -24.46 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.39 Total: -36.80 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.19 -10.24 -41.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071016082.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.218 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds