Wall clock time and date at job start Tue Mar 31 2020 05:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.53001 * 109.47528 * 293.95568 * 3 2 1 5 5 C 1.52995 * 109.47341 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47029 * 180.02562 * 5 4 3 7 7 H 1.08004 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00004 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00263 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00053 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.47461 * 89.99691 * 10 8 6 12 12 H 1.48497 * 109.47176 * 210.00236 * 10 8 6 13 13 H 1.48509 * 109.47146 * 329.99661 * 10 8 6 14 14 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 15 15 C 1.50695 * 109.46944 * 66.04457 * 14 2 1 16 16 C 1.38233 * 120.00367 * 269.72185 * 15 14 2 17 17 C 1.38234 * 120.00091 * 179.76721 * 16 15 14 18 18 C 1.38241 * 119.99888 * 0.51277 * 17 16 15 19 19 C 1.50697 * 119.99960 * 179.72495 * 18 17 16 20 20 C 1.53001 * 109.47256 * 240.02292 * 19 18 17 21 21 C 1.53005 * 109.47084 * 0.02562 * 19 18 17 22 22 C 1.52997 * 109.47373 * 120.02210 * 19 18 17 23 23 C 1.38235 * 120.00084 * 359.74362 * 18 17 16 24 24 C 1.38236 * 119.99755 * 0.02562 * 23 18 17 25 25 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 26 26 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 28 28 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 29 29 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 30 30 H 1.09001 * 109.46792 * 299.99900 * 4 3 2 31 31 H 1.09001 * 109.46841 * 59.99659 * 4 3 2 32 32 H 1.09001 * 109.46899 * 299.99594 * 5 4 3 33 33 H 1.08991 * 109.47614 * 59.99853 * 5 4 3 34 34 H 0.96998 * 120.00359 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.46783 * 186.04686 * 14 2 1 36 36 H 1.09005 * 109.46676 * 306.04728 * 14 2 1 37 37 H 1.07999 * 119.99639 * 0.02562 * 16 15 14 38 38 H 1.08001 * 120.00383 * 180.23398 * 17 16 15 39 39 H 1.09004 * 109.47077 * 59.99122 * 20 19 18 40 40 H 1.08995 * 109.47481 * 179.97438 * 20 19 18 41 41 H 1.09005 * 109.46711 * 300.00078 * 20 19 18 42 42 H 1.09002 * 109.47054 * 60.00720 * 21 19 18 43 43 H 1.09004 * 109.46877 * 180.02562 * 21 19 18 44 44 H 1.08998 * 109.46872 * 300.00199 * 21 19 18 45 45 H 1.08997 * 109.47274 * 59.99468 * 22 19 18 46 46 H 1.08997 * 109.47144 * 180.02562 * 22 19 18 47 47 H 1.09005 * 109.46914 * 299.99913 * 22 19 18 48 48 H 1.07993 * 120.00237 * 179.97438 * 23 18 17 49 49 H 1.08005 * 119.99692 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1802 3.4856 -1.3184 6 6 1.8211 4.1616 -2.6166 7 1 1.2581 3.6259 -3.3667 8 6 2.2113 5.4638 -2.8468 9 7 1.8983 6.0535 -3.9799 10 14 3.1844 6.3905 -1.5492 11 1 4.6368 6.1777 -1.7738 12 1 2.8765 7.8403 -1.6411 13 1 2.8134 5.8902 -0.2011 14 6 1.9955 -0.7660 1.1376 15 6 1.6370 -2.2204 0.9729 16 6 0.4539 -2.7045 1.4989 17 6 0.1227 -4.0376 1.3436 18 6 0.9798 -4.8889 0.6713 19 6 0.6217 -6.3435 0.5073 20 6 1.6959 -7.2107 1.1669 21 6 -0.7303 -6.6138 1.1707 22 6 0.5358 -6.6829 -0.9820 23 6 2.1654 -4.4059 0.1498 24 6 2.4942 -3.0718 0.3010 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.5611 1.9274 0.8310 29 1 3.0797 1.3444 0.1083 30 1 2.0658 1.5016 -2.1491 31 1 0.5471 2.0845 -1.4264 32 1 1.7462 4.0418 -0.4875 33 1 3.2645 3.4583 -1.2104 34 1 2.1731 6.9695 -4.1420 35 1 3.0798 -0.6611 1.1756 36 1 1.5611 -0.3872 2.0628 37 1 -0.2137 -2.0403 2.0277 38 1 -0.8034 -4.4151 1.7513 39 1 1.7572 -6.9688 2.2280 40 1 1.4367 -8.2627 1.0487 41 1 2.6591 -7.0180 0.6942 42 1 -1.4956 -5.9961 0.7007 43 1 -0.9891 -7.6661 1.0525 44 1 -0.6692 -6.3720 2.2318 45 1 1.4988 -6.4902 -1.4547 46 1 0.2764 -7.7349 -1.1006 47 1 -0.2296 -6.0651 -1.4519 48 1 2.8350 -5.0710 -0.3750 49 1 3.4207 -2.6945 -0.1061 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071016082.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:00 Heat of formation + Delta-G solvation = -15.396267 kcal Electronic energy + Delta-G solvation = -22525.126955 eV Core-core repulsion = 19450.281030 eV Total energy + Delta-G solvation = -3074.845925 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.91821 -38.98855 -37.13688 -35.56053 -33.66335 -31.99679 -31.53577 -28.94621 -28.28010 -28.07830 -27.94571 -25.59175 -23.36676 -23.17594 -22.01164 -21.52757 -20.03113 -18.88538 -17.40795 -16.80791 -16.72896 -16.21769 -15.99496 -15.84914 -15.27256 -15.12901 -15.03103 -14.72580 -14.51858 -14.33054 -14.25096 -13.73423 -13.55132 -13.30301 -12.98511 -12.90467 -12.81639 -12.71117 -12.57762 -12.52603 -12.43945 -12.35219 -12.11633 -11.79595 -11.76126 -11.60426 -11.40588 -11.37015 -11.31895 -11.20377 -10.75945 -9.73729 -9.48652 -9.18174 -8.29132 -6.33552 0.45081 0.57290 1.36022 1.38167 1.50353 2.36672 2.74254 3.05888 3.25466 3.68845 3.83309 3.93118 4.07443 4.14499 4.15140 4.19617 4.27797 4.40786 4.42023 4.48226 4.59995 4.61588 4.69340 4.73017 4.75639 4.80452 4.87372 4.88851 4.92060 4.96486 5.00919 5.03214 5.05512 5.08520 5.14097 5.19390 5.23898 5.28300 5.39938 5.45891 5.52354 5.59836 5.63704 5.66584 5.77121 5.80025 6.09733 6.14440 6.20019 6.30778 6.74638 7.30839 8.87956 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.035464 B = 0.002413 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.351220 B =11600.143683 C =11727.872390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.547 5.547 3 C 0.065 3.935 4 C -0.088 4.088 5 C -0.009 4.009 6 C -0.533 4.533 7 H 0.027 0.973 8 C 0.000 4.000 9 N -0.953 5.953 10 Si 0.956 3.044 11 H -0.265 1.265 12 H -0.284 1.284 13 H -0.245 1.245 14 C 0.094 3.906 15 C -0.089 4.089 16 C -0.118 4.118 17 C -0.129 4.129 18 C -0.076 4.076 19 C -0.030 4.030 20 C -0.136 4.136 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.123 4.123 24 C -0.110 4.110 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.030 0.970 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.020 0.980 33 H 0.021 0.979 34 H 0.266 0.734 35 H 0.085 0.915 36 H 0.047 0.953 37 H 0.125 0.875 38 H 0.139 0.861 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.047 0.953 48 H 0.130 0.870 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.774 -28.193 15.941 32.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.271 5.271 3 C -0.063 4.063 4 C -0.126 4.126 5 C -0.047 4.047 6 C -0.571 4.571 7 H 0.046 0.954 8 C -0.197 4.197 9 N -0.594 5.594 10 Si 0.778 3.222 11 H -0.190 1.190 12 H -0.210 1.210 13 H -0.168 1.168 14 C -0.033 4.033 15 C -0.090 4.090 16 C -0.137 4.137 17 C -0.147 4.147 18 C -0.076 4.076 19 C -0.030 4.030 20 C -0.193 4.193 21 C -0.200 4.200 22 C -0.195 4.195 23 C -0.141 4.141 24 C -0.128 4.128 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.143 0.857 38 H 0.156 0.844 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.066 0.934 48 H 0.148 0.852 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.603 -28.265 15.426 32.240 hybrid contribution -0.015 1.411 0.423 1.473 sum -1.617 -26.854 15.849 31.224 Atomic orbital electron populations 1.22448 0.87321 1.02155 1.00577 1.61974 1.08477 1.13601 1.43048 1.22109 1.00187 0.87333 0.96621 1.21281 0.99703 0.94973 0.96607 1.19491 0.96319 0.93971 0.94946 1.21509 1.34927 0.98252 1.02429 0.95440 1.26096 0.97012 0.98664 0.97888 1.70081 1.48783 1.13937 1.26611 0.85580 0.79137 0.77176 0.80264 1.19015 1.20964 1.16840 1.21072 1.00695 0.89928 0.91606 1.19771 0.95483 0.94751 0.98970 1.21196 0.96228 0.96071 1.00183 1.21342 1.00359 0.93063 0.99899 1.20048 0.94305 0.95882 0.97369 1.19548 0.96688 0.90264 0.96516 1.21869 0.97729 0.99444 1.00248 1.21955 0.95318 1.02220 1.00492 1.21887 1.01840 1.01850 0.93950 1.21119 0.97266 0.95282 1.00452 1.21149 0.99902 0.93634 0.98131 0.92414 0.90553 0.95134 0.94657 0.90316 0.93581 0.93660 0.96207 0.96103 0.92503 0.89641 0.93526 0.85708 0.84350 0.92876 0.91200 0.92538 0.92517 0.91350 0.92108 0.92626 0.91114 0.93382 0.85234 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 8.99 127.69 1.15 1.77 16 2 N -0.55 -15.74 4.75 -927.01 -4.41 -20.14 16 3 C 0.06 2.08 4.96 86.30 0.43 2.51 16 4 C -0.09 -3.58 5.08 30.59 0.16 -3.43 16 5 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 6 C -0.53 -31.86 9.66 25.60 0.25 -31.61 16 7 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 8 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 9 N -0.95 -61.27 13.96 21.45 0.30 -60.97 16 10 Si 0.96 44.98 27.47 68.60 1.88 46.86 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.24 -10.62 6.54 99.48 0.65 -9.97 16 14 C 0.09 2.20 5.12 85.55 0.44 2.64 16 15 C -0.09 -2.00 4.88 -19.87 -0.10 -2.10 16 16 C -0.12 -2.38 7.92 22.27 0.18 -2.21 16 17 C -0.13 -2.34 8.98 22.27 0.20 -2.14 16 18 C -0.08 -1.35 4.76 -19.87 -0.09 -1.44 16 19 C -0.03 -0.40 0.85 -52.93 -0.05 -0.45 16 20 C -0.14 -1.56 8.29 71.98 0.60 -0.97 16 21 C -0.14 -1.59 7.13 71.98 0.51 -1.08 16 22 C -0.14 -1.81 8.29 71.98 0.60 -1.21 16 23 C -0.12 -2.38 8.71 22.27 0.19 -2.18 16 24 C -0.11 -2.40 9.70 22.27 0.22 -2.19 16 25 H 0.06 1.75 6.47 -2.39 -0.02 1.74 16 26 H 0.08 1.89 5.91 -2.38 -0.01 1.88 16 27 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.04 1.09 8.12 -2.38 -0.02 1.07 16 29 H 0.08 2.37 7.93 -2.39 -0.02 2.35 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.04 1.90 6.55 -2.39 -0.02 1.88 16 32 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 33 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 34 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 35 H 0.09 1.90 7.87 -2.39 -0.02 1.88 16 36 H 0.05 1.01 8.06 -2.38 -0.02 1.00 16 37 H 0.12 2.23 8.00 -2.91 -0.02 2.21 16 38 H 0.14 2.00 5.90 -2.91 -0.02 1.98 16 39 H 0.05 0.64 8.14 -2.38 -0.02 0.63 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.06 0.66 7.39 -2.38 -0.02 0.64 16 42 H 0.06 0.67 7.51 -2.39 -0.02 0.65 16 43 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.06 0.65 7.51 -2.39 -0.02 0.63 16 45 H 0.05 0.75 7.39 -2.39 -0.02 0.73 16 46 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 48 H 0.13 2.10 7.10 -2.91 -0.02 2.08 16 49 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -67.69 377.60 3.85 -63.84 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.82 Total: 14.39 kcal Atomic # 6 Polarization: -49.23 SS G_CDS: 5.26 Total: -43.97 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -4.11 Total: -81.11 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -67.69 3.85 -63.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071016082.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.442 kcal (2) G-P(sol) polarization free energy of solvation -67.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds