Wall clock time and date at job start Tue Mar 31 2020 05:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47247 * 2 1 4 4 C 1.38234 * 120.00085 * 269.72733 * 3 2 1 5 5 C 1.38236 * 119.99504 * 179.81103 * 4 3 2 6 6 C 1.38231 * 120.00498 * 0.41534 * 5 4 3 7 7 C 1.50697 * 120.00276 * 179.78929 * 6 5 4 8 8 H 1.09002 * 109.47167 * 200.02598 * 7 6 5 9 9 N 1.46899 * 109.47420 * 320.02577 * 7 6 5 10 10 C 1.46906 * 111.00069 * 274.72698 * 9 7 6 11 11 C 1.52996 * 109.46800 * 185.15366 * 10 9 7 12 12 C 1.53003 * 109.46634 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.46799 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00421 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99862 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99836 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00136 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46907 * 90.00057 * 17 15 13 19 19 H 1.48502 * 109.47487 * 209.99841 * 17 15 13 20 20 H 1.48504 * 109.47204 * 330.00272 * 17 15 13 21 21 C 1.52999 * 109.47029 * 80.02547 * 7 6 5 22 22 C 1.53005 * 109.47352 * 174.48117 * 21 7 6 23 23 C 1.53003 * 109.47000 * 294.48141 * 21 7 6 24 24 C 1.38233 * 119.99751 * 359.81808 * 6 5 4 25 25 C 1.38238 * 120.00399 * 359.97438 * 24 6 5 26 26 H 1.09003 * 109.47155 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47351 * 59.99446 * 1 2 3 28 28 H 1.08998 * 109.47425 * 299.99905 * 1 2 3 29 29 H 1.08998 * 109.46847 * 120.00392 * 2 1 3 30 30 H 1.08998 * 109.47425 * 240.00095 * 2 1 3 31 31 H 1.07995 * 120.00304 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.99510 * 180.20901 * 5 4 3 33 33 H 1.00900 * 110.99696 * 38.67737 * 9 7 6 34 34 H 1.09003 * 109.46405 * 305.15041 * 10 9 7 35 35 H 1.08995 * 109.47053 * 65.14878 * 10 9 7 36 36 H 1.08995 * 109.47664 * 299.99326 * 11 10 9 37 37 H 1.09005 * 109.47206 * 60.00078 * 11 10 9 38 38 H 1.08999 * 109.47316 * 299.99611 * 12 11 10 39 39 H 1.08997 * 109.47107 * 60.00202 * 12 11 10 40 40 H 0.97005 * 119.99805 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.46985 * 54.47915 * 21 7 6 42 42 H 1.08997 * 109.46830 * 55.52232 * 22 21 7 43 43 H 1.08991 * 109.47259 * 175.52804 * 22 21 7 44 44 H 1.09007 * 109.46819 * 295.52714 * 22 21 7 45 45 H 1.08992 * 109.47307 * 60.00094 * 23 21 7 46 46 H 1.08996 * 109.46844 * 179.97438 * 23 21 7 47 47 H 1.09000 * 109.47067 * 299.99723 * 23 21 7 48 48 H 1.08004 * 119.99964 * 179.97438 * 24 6 5 49 49 H 1.07996 * 120.00405 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7252 3.3752 -1.1970 6 6 2.9547 4.0271 0.0001 7 6 3.4575 5.4477 0.0002 8 1 3.9096 5.6731 0.9661 9 7 4.4607 5.6122 -1.0602 10 6 5.7941 5.2134 -0.5900 11 6 6.8295 5.5183 -1.6744 12 6 8.2183 5.1035 -1.1843 13 6 9.2383 5.4044 -2.2521 14 1 8.9271 5.8467 -3.1870 15 6 10.5687 5.1139 -2.0361 16 7 10.9476 4.5747 -0.8980 17 14 11.8329 5.4861 -3.3599 18 1 12.3588 6.8617 -3.1693 19 1 12.9497 4.5119 -3.2659 20 1 11.1953 5.3808 -4.6970 21 6 2.2886 6.4024 -0.2511 22 6 2.7721 7.8477 -0.1148 23 6 1.7416 6.1786 -1.6623 24 6 2.7235 3.3757 1.1972 25 6 2.2623 2.0725 1.1973 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.0927 1.5599 -2.1324 32 1 2.9062 3.8839 -2.1323 33 1 4.2000 5.0969 -1.8876 34 1 6.0412 5.7687 0.3148 35 1 5.7985 4.1452 -0.3734 36 1 6.5823 4.9631 -2.5792 37 1 6.8250 6.5866 -1.8909 38 1 8.4653 5.6590 -0.2796 39 1 8.2230 4.0353 -0.9675 40 1 11.8836 4.3707 -0.7458 41 1 1.5011 6.2124 0.4782 42 1 3.6126 8.0146 -0.7884 43 1 1.9602 8.5281 -0.3712 44 1 3.0880 8.0297 0.9125 45 1 1.3971 5.1491 -1.7594 46 1 0.9086 6.8584 -1.8411 47 1 2.5291 6.3686 -2.3916 48 1 2.9032 3.8849 2.1326 49 1 2.0821 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071122834.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:03 Heat of formation + Delta-G solvation = -14.429427 kcal Electronic energy + Delta-G solvation = -22985.661047 eV Core-core repulsion = 19910.857047 eV Total energy + Delta-G solvation = -3074.804000 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.09618 -37.59525 -34.75804 -33.93722 -32.86678 -31.06026 -30.88693 -29.39370 -27.07681 -26.52540 -25.07319 -23.24108 -22.89357 -21.99051 -20.77919 -20.16921 -19.28242 -16.84340 -16.32128 -15.76951 -15.47253 -14.99028 -14.73666 -14.51120 -14.30776 -13.93178 -13.85780 -13.53148 -13.36590 -13.14268 -13.02815 -12.54911 -12.32248 -12.01217 -11.91923 -11.76430 -11.71933 -11.44049 -11.36998 -11.24574 -10.93892 -10.84715 -10.71789 -10.67434 -10.54937 -10.51868 -10.36687 -9.64192 -9.29340 -9.01605 -8.93315 -8.53362 -8.30496 -8.11929 -5.95720 -3.97563 1.28497 1.36969 3.34710 3.40572 3.44295 3.68768 4.41235 4.52145 4.56635 4.66532 4.75226 4.93606 4.96397 5.05539 5.12805 5.14187 5.26572 5.32537 5.40018 5.41874 5.46183 5.63012 5.65678 5.73055 5.77374 5.79690 5.87419 5.90719 5.97176 5.99014 6.00947 6.05674 6.08474 6.18283 6.35811 6.38726 6.40763 6.51907 6.55112 6.56486 6.78443 6.85742 6.96866 7.19926 7.40979 7.66598 7.73611 7.89426 8.05286 8.48644 9.09798 9.66142 11.15756 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014437 B = 0.003372 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.045842 B = 8300.980178 C = 9545.799360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.089 4.089 4 C -0.115 4.115 5 C -0.111 4.111 6 C -0.106 4.106 7 C 0.127 3.873 8 H 0.083 0.917 9 N -0.676 5.676 10 C 0.059 3.941 11 C -0.104 4.104 12 C 0.023 3.977 13 C -0.517 4.517 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.075 4.075 22 C -0.141 4.141 23 C -0.153 4.153 24 C -0.111 4.111 25 C -0.117 4.117 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.337 0.663 34 H 0.065 0.935 35 H 0.024 0.976 36 H 0.043 0.957 37 H 0.055 0.945 38 H 0.015 0.985 39 H 0.013 0.987 40 H 0.260 0.740 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.065 0.935 48 H 0.119 0.881 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.481 -4.059 3.250 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.133 4.133 5 C -0.130 4.130 6 C -0.108 4.108 7 C 0.017 3.983 8 H 0.101 0.899 9 N -0.307 5.307 10 C -0.069 4.069 11 C -0.142 4.142 12 C -0.015 4.015 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.094 4.094 22 C -0.198 4.198 23 C -0.210 4.210 24 C -0.129 4.129 25 C -0.135 4.135 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.157 0.843 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.138 0.862 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -23.206 -3.438 3.458 23.713 hybrid contribution 0.759 -0.895 -0.563 1.302 sum -22.446 -4.334 2.895 23.043 Atomic orbital electron populations 1.21739 0.94859 1.01524 1.02140 1.20531 0.96037 0.92861 1.02809 1.19853 0.99611 0.96147 0.93257 1.20975 1.00153 0.94758 0.97454 1.20980 0.99492 0.94693 0.97796 1.20742 0.99219 0.97528 0.93302 1.20660 0.92514 0.88737 0.96415 0.89894 1.60788 1.01969 1.61540 1.06369 1.22147 0.87681 0.97655 0.99449 1.21588 0.95671 1.00753 0.96220 1.19057 0.89517 0.96424 0.96511 1.21266 0.92135 1.40557 1.01614 0.92706 1.25032 0.98650 0.95330 0.95545 1.69973 1.16431 1.43447 1.23789 0.86605 0.81168 0.78048 0.82247 1.20673 1.21287 1.19891 1.21015 0.95695 0.95195 0.97483 1.21751 1.01553 0.94680 1.01822 1.21954 1.00735 1.01210 0.97101 1.21027 0.99550 0.94782 0.97587 1.20980 1.00200 0.94939 0.97379 0.92530 0.92608 0.92646 0.91155 0.91097 0.86309 0.85891 0.84298 0.91622 0.95761 0.93827 0.92630 0.96670 0.96895 0.93086 0.91882 0.90793 0.93576 0.93448 0.92676 0.93336 0.91554 0.86250 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.89 37.15 0.37 -0.70 16 2 C -0.09 -0.72 6.06 -27.89 -0.17 -0.89 16 3 C -0.09 -0.95 5.13 -104.62 -0.54 -1.49 16 4 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 5 C -0.11 -1.33 7.11 -39.58 -0.28 -1.61 16 6 C -0.11 -1.30 4.64 -104.63 -0.49 -1.79 16 7 C 0.13 1.59 1.99 -68.87 -0.14 1.45 16 8 H 0.08 1.08 7.57 -51.93 -0.39 0.69 16 9 N -0.68 -9.71 4.94 -107.95 -0.53 -10.24 16 10 C 0.06 1.05 5.51 -3.82 -0.02 1.02 16 11 C -0.10 -2.20 5.46 -26.73 -0.15 -2.35 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 14 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 17 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 C -0.07 -0.82 2.73 -90.62 -0.25 -1.07 16 22 C -0.14 -1.56 9.14 37.16 0.34 -1.22 16 23 C -0.15 -1.59 7.99 37.16 0.30 -1.29 16 24 C -0.11 -1.30 9.67 -39.58 -0.38 -1.68 16 25 C -0.12 -1.28 9.70 -39.58 -0.38 -1.67 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 30 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 31 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.38 5.58 -52.49 -0.29 1.08 16 33 H 0.34 4.67 5.63 -39.29 -0.22 4.44 16 34 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 35 H 0.02 0.45 8.10 -51.93 -0.42 0.03 16 36 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.95 7.65 -51.93 -0.40 0.55 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 45 H 0.05 0.57 5.57 -51.93 -0.29 0.28 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.74 7.13 -51.93 -0.37 0.37 16 48 H 0.12 1.24 8.04 -52.48 -0.42 0.82 16 49 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -30.46 384.46 -10.84 -41.30 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -9.10 Total: 1.19 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: -2.72 Total: -28.31 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.20 Total: -37.00 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.46 -10.84 -41.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071122834.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.870 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds