Wall clock time and date at job start Tue Mar 31 2020 05:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47247 * 2 1 4 4 C 1.38234 * 120.00085 * 269.72733 * 3 2 1 5 5 C 1.38236 * 119.99504 * 179.81103 * 4 3 2 6 6 C 1.38231 * 120.00498 * 0.41534 * 5 4 3 7 7 C 1.50697 * 120.00276 * 179.78929 * 6 5 4 8 8 H 1.09002 * 109.47167 * 200.02598 * 7 6 5 9 9 N 1.46899 * 109.47420 * 320.02577 * 7 6 5 10 10 C 1.46906 * 111.00069 * 274.72698 * 9 7 6 11 11 C 1.52996 * 109.46800 * 185.15366 * 10 9 7 12 12 C 1.53003 * 109.46634 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.46799 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00421 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99862 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99836 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00136 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46907 * 90.00057 * 17 15 13 19 19 H 1.48502 * 109.47487 * 209.99841 * 17 15 13 20 20 H 1.48504 * 109.47204 * 330.00272 * 17 15 13 21 21 C 1.52999 * 109.47029 * 80.02547 * 7 6 5 22 22 C 1.53005 * 109.47352 * 174.48117 * 21 7 6 23 23 C 1.53003 * 109.47000 * 294.48141 * 21 7 6 24 24 C 1.38233 * 119.99751 * 359.81808 * 6 5 4 25 25 C 1.38238 * 120.00399 * 359.97438 * 24 6 5 26 26 H 1.09003 * 109.47155 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47351 * 59.99446 * 1 2 3 28 28 H 1.08998 * 109.47425 * 299.99905 * 1 2 3 29 29 H 1.08998 * 109.46847 * 120.00392 * 2 1 3 30 30 H 1.08998 * 109.47425 * 240.00095 * 2 1 3 31 31 H 1.07995 * 120.00304 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.99510 * 180.20901 * 5 4 3 33 33 H 1.00900 * 110.99696 * 38.67737 * 9 7 6 34 34 H 1.09003 * 109.46405 * 305.15041 * 10 9 7 35 35 H 1.08995 * 109.47053 * 65.14878 * 10 9 7 36 36 H 1.08995 * 109.47664 * 299.99326 * 11 10 9 37 37 H 1.09005 * 109.47206 * 60.00078 * 11 10 9 38 38 H 1.08999 * 109.47316 * 299.99611 * 12 11 10 39 39 H 1.08997 * 109.47107 * 60.00202 * 12 11 10 40 40 H 0.97005 * 119.99805 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.46985 * 54.47915 * 21 7 6 42 42 H 1.08997 * 109.46830 * 55.52232 * 22 21 7 43 43 H 1.08991 * 109.47259 * 175.52804 * 22 21 7 44 44 H 1.09007 * 109.46819 * 295.52714 * 22 21 7 45 45 H 1.08992 * 109.47307 * 60.00094 * 23 21 7 46 46 H 1.08996 * 109.46844 * 179.97438 * 23 21 7 47 47 H 1.09000 * 109.47067 * 299.99723 * 23 21 7 48 48 H 1.08004 * 119.99964 * 179.97438 * 24 6 5 49 49 H 1.07996 * 120.00405 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7252 3.3752 -1.1970 6 6 2.9547 4.0271 0.0001 7 6 3.4575 5.4477 0.0002 8 1 3.9096 5.6731 0.9661 9 7 4.4607 5.6122 -1.0602 10 6 5.7941 5.2134 -0.5900 11 6 6.8295 5.5183 -1.6744 12 6 8.2183 5.1035 -1.1843 13 6 9.2383 5.4044 -2.2521 14 1 8.9271 5.8467 -3.1870 15 6 10.5687 5.1139 -2.0361 16 7 10.9476 4.5747 -0.8980 17 14 11.8329 5.4861 -3.3599 18 1 12.3588 6.8617 -3.1693 19 1 12.9497 4.5119 -3.2659 20 1 11.1953 5.3808 -4.6970 21 6 2.2886 6.4024 -0.2511 22 6 2.7721 7.8477 -0.1148 23 6 1.7416 6.1786 -1.6623 24 6 2.7235 3.3757 1.1972 25 6 2.2623 2.0725 1.1973 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.0927 1.5599 -2.1324 32 1 2.9062 3.8839 -2.1323 33 1 4.2000 5.0969 -1.8876 34 1 6.0412 5.7687 0.3148 35 1 5.7985 4.1452 -0.3734 36 1 6.5823 4.9631 -2.5792 37 1 6.8250 6.5866 -1.8909 38 1 8.4653 5.6590 -0.2796 39 1 8.2230 4.0353 -0.9675 40 1 11.8836 4.3707 -0.7458 41 1 1.5011 6.2124 0.4782 42 1 3.6126 8.0146 -0.7884 43 1 1.9602 8.5281 -0.3712 44 1 3.0880 8.0297 0.9125 45 1 1.3971 5.1491 -1.7594 46 1 0.9086 6.8584 -1.8411 47 1 2.5291 6.3686 -2.3916 48 1 2.9032 3.8849 2.1326 49 1 2.0821 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071122834.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:02 Heat of formation + Delta-G solvation = -28.490720 kcal Electronic energy + Delta-G solvation = -22986.270791 eV Core-core repulsion = 19910.857047 eV Total energy + Delta-G solvation = -3075.413743 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.01224 -38.58930 -36.39812 -34.71254 -34.68329 -32.50036 -31.90536 -30.44128 -28.15955 -27.90801 -26.33146 -24.39332 -23.99842 -23.19851 -21.94434 -21.56804 -20.30645 -18.50441 -17.80253 -16.83990 -16.48869 -16.34970 -16.11687 -15.71066 -15.55899 -14.97677 -14.65430 -14.53908 -14.41051 -14.17733 -14.12856 -13.94503 -13.61565 -13.42218 -13.18479 -12.88751 -12.79958 -12.68524 -12.55712 -12.44399 -12.35331 -12.10545 -11.99087 -11.72027 -11.62420 -11.59864 -11.56947 -11.37891 -11.34870 -11.03274 -10.55667 -9.81355 -9.46284 -9.29374 -8.20225 -6.31413 0.40910 0.49269 1.39491 1.41282 1.52424 2.40819 2.81426 3.12730 3.24677 3.69610 3.87428 3.94778 4.07227 4.12491 4.16408 4.28727 4.30393 4.37578 4.45080 4.50500 4.56862 4.65127 4.70002 4.72779 4.76272 4.89597 4.95291 5.00365 5.03493 5.05640 5.07785 5.11371 5.15184 5.18742 5.21393 5.25503 5.30582 5.37233 5.49721 5.51103 5.53128 5.62482 5.66091 5.72342 5.75409 5.85888 6.10957 6.12322 6.27577 6.48331 6.85576 7.37811 8.91813 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014437 B = 0.003372 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.045842 B = 8300.980178 C = 9545.799360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.126 4.126 5 C -0.121 4.121 6 C -0.119 4.119 7 C 0.131 3.869 8 H 0.075 0.925 9 N -0.670 5.670 10 C 0.076 3.924 11 C -0.089 4.089 12 C 0.027 3.973 13 C -0.542 4.542 14 H 0.060 0.940 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.966 3.034 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.263 1.263 21 C -0.070 4.070 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.123 4.123 25 C -0.125 4.125 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.133 0.867 32 H 0.126 0.874 33 H 0.342 0.658 34 H 0.060 0.940 35 H 0.013 0.987 36 H 0.047 0.953 37 H 0.054 0.946 38 H -0.010 1.010 39 H -0.013 1.013 40 H 0.263 0.737 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.059 0.941 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.128 0.872 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.577 -4.196 2.391 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.144 4.144 5 C -0.139 4.139 6 C -0.121 4.121 7 C 0.020 3.980 8 H 0.093 0.907 9 N -0.301 5.301 10 C -0.053 4.053 11 C -0.127 4.127 12 C -0.011 4.011 13 C -0.580 4.580 14 H 0.078 0.922 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.187 1.187 21 C -0.089 4.089 22 C -0.195 4.195 23 C -0.206 4.206 24 C -0.142 4.142 25 C -0.143 4.143 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.162 0.838 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.008 0.992 39 H 0.005 0.995 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.146 0.854 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -24.329 -3.571 2.595 24.726 hybrid contribution 1.063 -0.889 -0.248 1.408 sum -23.266 -4.460 2.347 23.805 Atomic orbital electron populations 1.21710 0.93871 1.02393 1.01919 1.20582 0.96822 0.91454 1.03351 1.20176 0.98862 0.97219 0.93020 1.21229 1.00067 0.94681 0.98413 1.21094 0.99813 0.95203 0.97804 1.20725 1.00188 0.97357 0.93831 1.20653 0.92376 0.89697 0.95229 0.90677 1.60716 1.00896 1.61342 1.07139 1.21795 0.88752 0.96830 0.97927 1.21332 0.93697 1.00443 0.97188 1.18951 0.92470 0.94357 0.95290 1.21700 0.93198 1.40821 1.02303 0.92209 1.26012 1.01063 0.94869 0.98031 1.70108 1.17164 1.44290 1.25929 0.85432 0.78085 0.78150 0.79298 1.19687 1.20688 1.18681 1.20988 0.95144 0.94551 0.98192 1.21719 1.01339 0.95104 1.01380 1.21910 1.00777 1.01592 0.96309 1.21236 0.99741 0.95363 0.97824 1.21245 0.99883 0.94793 0.98350 0.91132 0.92895 0.92796 0.90524 0.90672 0.84914 0.85580 0.83756 0.92133 0.96867 0.93433 0.92689 0.99152 0.99494 0.92784 0.90944 0.92638 0.92179 0.93411 0.92558 0.92208 0.92404 0.85410 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.89 71.98 0.71 -1.10 16 2 C -0.08 -1.30 6.06 29.85 0.18 -1.12 16 3 C -0.09 -1.88 5.13 -19.86 -0.10 -1.98 16 4 C -0.13 -2.70 9.70 22.27 0.22 -2.48 16 5 C -0.12 -2.80 7.11 22.27 0.16 -2.64 16 6 C -0.12 -2.87 4.64 -19.87 -0.09 -2.96 16 7 C 0.13 3.20 1.99 44.17 0.09 3.29 16 8 H 0.08 1.96 7.57 -2.39 -0.02 1.94 16 9 N -0.67 -19.10 4.94 -495.45 -2.45 -21.54 16 10 C 0.08 2.74 5.51 86.30 0.48 3.21 16 11 C -0.09 -3.80 5.46 30.59 0.17 -3.63 16 12 C 0.03 1.48 4.97 29.85 0.15 1.62 16 13 C -0.54 -31.83 9.11 25.60 0.23 -31.59 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 15 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 16 N -0.93 -58.22 13.29 21.45 0.28 -57.94 16 17 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 21 C -0.07 -1.45 2.73 -10.79 -0.03 -1.48 16 22 C -0.14 -2.92 9.14 71.98 0.66 -2.26 16 23 C -0.15 -2.88 7.99 71.98 0.58 -2.31 16 24 C -0.12 -2.81 9.67 22.27 0.22 -2.59 16 25 C -0.12 -2.60 9.70 22.27 0.22 -2.39 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 30 H 0.07 1.09 8.08 -2.39 -0.02 1.07 16 31 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.13 2.74 5.58 -2.91 -0.02 2.72 16 33 H 0.34 9.30 5.63 -89.69 -0.50 8.80 16 34 H 0.06 2.23 7.93 -2.39 -0.02 2.21 16 35 H 0.01 0.50 8.10 -2.39 -0.02 0.48 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 38 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 39 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 40 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.05 1.38 7.65 -2.39 -0.02 1.37 16 43 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.06 1.08 5.57 -2.39 -0.01 1.07 16 46 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.06 1.22 7.13 -2.39 -0.02 1.20 16 48 H 0.13 2.58 8.04 -2.91 -0.02 2.56 16 49 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -65.21 384.46 4.52 -60.69 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.38 Total: 21.71 kcal Atomic # 6 Polarization: -54.37 SS G_CDS: 4.28 Total: -50.09 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -2.16 Total: -79.48 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -65.21 4.52 -60.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071122834.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.198 kcal (2) G-P(sol) polarization free energy of solvation -65.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds