Wall clock time and date at job start Tue Mar 31 2020 06:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46438 * 2 1 4 4 S 1.81397 * 109.46961 * 119.99842 * 2 1 3 5 5 C 1.81404 * 103.00143 * 295.00346 * 4 2 1 6 6 C 1.50701 * 109.47098 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47432 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46890 * 120.00210 * 10 8 6 13 13 H 1.48501 * 109.47062 * 240.00257 * 10 8 6 14 14 C 1.50692 * 109.47311 * 240.00201 * 2 1 3 15 15 C 1.38264 * 119.98312 * 299.72141 * 14 2 1 16 16 C 1.38210 * 120.04061 * 179.72804 * 15 14 2 17 17 C 1.38342 * 119.99552 * 0.55018 * 16 15 14 18 18 Cl 1.73598 * 120.01709 * 179.74988 * 17 16 15 19 19 C 1.38445 * 119.96670 * 359.72127 * 17 16 15 20 20 Cl 1.73599 * 120.02365 * 180.02562 * 19 17 16 21 21 C 1.38204 * 119.98099 * 119.99807 * 14 2 1 22 22 H 1.09001 * 109.47448 * 299.99853 * 1 2 3 23 23 H 1.09005 * 109.47103 * 60.00454 * 1 2 3 24 24 H 1.09002 * 109.46438 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47124 * 60.00087 * 5 4 2 26 26 H 1.09001 * 109.46975 * 300.00209 * 5 4 2 27 27 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 28 28 H 1.08003 * 119.97808 * 359.97438 * 15 14 2 29 29 H 1.07998 * 119.99872 * 180.30244 * 16 15 14 30 30 H 1.07997 * 120.00191 * 0.02562 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.5663 0.2153 2.8309 6 6 1.9972 -0.3695 4.1513 7 1 2.5573 -1.2926 4.1760 8 6 1.6773 0.2744 5.3278 9 7 0.9956 1.3987 5.2977 10 14 2.2120 -0.4502 6.9643 11 1 2.9607 -1.7105 6.7267 12 1 3.0867 0.5187 7.6725 13 1 1.0142 -0.7347 7.7947 14 6 2.0324 -0.7103 -1.2304 15 6 1.7030 -2.0357 -1.4460 16 6 2.1584 -2.6867 -2.5769 17 6 2.9538 -2.0155 -3.4882 18 17 3.5315 -2.8345 -4.9056 19 6 3.2884 -0.6899 -3.2696 20 17 4.2859 0.1540 -4.4126 21 6 2.8269 -0.0382 -2.1398 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3632 -1.0277 0.0005 25 1 0.4791 0.2881 2.8037 26 1 2.0000 1.2085 2.7142 27 1 0.7702 1.8515 6.1254 28 1 1.0860 -2.5614 -0.7322 29 1 1.8966 -3.7206 -2.7471 30 1 3.0879 0.9956 -1.9684 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079011108.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:54 Heat of formation + Delta-G solvation = -11.043495 kcal Electronic energy + Delta-G solvation = -15521.373435 eV Core-core repulsion = 12686.694406 eV Total energy + Delta-G solvation = -2834.679029 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.70250 -36.83519 -36.65373 -33.92172 -33.19768 -31.08992 -29.44882 -28.39638 -24.14901 -23.24587 -22.99104 -21.10137 -17.52563 -16.65174 -16.27204 -15.84457 -15.13243 -14.64787 -14.40454 -14.16198 -13.88316 -13.31087 -13.02675 -12.57850 -12.41720 -12.09873 -12.04970 -12.02530 -11.53405 -11.34020 -11.30473 -11.04484 -10.96369 -10.88797 -10.66591 -9.95698 -9.62657 -9.10233 -8.88910 -8.66449 -8.59957 -6.79957 -6.24261 -4.28515 0.79832 0.98149 1.69983 2.06158 2.49899 3.22068 3.29660 3.35158 3.44159 3.74332 4.31795 4.46582 4.59900 4.99039 5.03452 5.10133 5.13268 5.31757 5.48642 5.60090 5.72952 5.87614 5.97381 6.02041 6.29721 6.41009 6.49628 7.03897 7.05736 7.70491 7.95847 8.73622 9.35034 10.86937 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.032601 B = 0.003273 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.650827 B = 8551.943919 C = 8708.327799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.030 4.030 3 H 0.090 0.910 4 S -0.288 6.288 5 C 0.090 3.910 6 C -0.512 4.512 7 H 0.068 0.932 8 C 0.066 3.934 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.281 1.281 14 C -0.031 4.031 15 C -0.083 4.083 16 C -0.098 4.098 17 C -0.037 4.037 18 Cl -0.058 7.058 19 C -0.029 4.029 20 Cl -0.056 7.056 21 C -0.091 4.091 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.038 0.962 26 H 0.035 0.965 27 H 0.265 0.735 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -4.357 -18.364 18.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 H 0.108 0.892 4 S -0.058 6.058 5 C -0.057 4.057 6 C -0.552 4.552 7 H 0.086 0.914 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.207 1.207 14 C -0.032 4.032 15 C -0.103 4.103 16 C -0.117 4.117 17 C -0.065 4.065 18 Cl -0.030 7.030 19 C -0.057 4.057 20 Cl -0.027 7.027 21 C -0.111 4.111 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.163 0.837 29 H 0.160 0.840 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.838 -5.146 -18.388 19.183 hybrid contribution -0.247 0.944 0.660 1.178 sum 1.591 -4.202 -17.728 18.289 Atomic orbital electron populations 1.22077 0.92479 1.03091 1.02365 1.21979 0.98827 1.01282 0.93772 0.89161 1.86810 1.76577 1.41538 1.00899 1.21112 0.98772 0.94640 0.91187 1.20706 1.36391 1.09280 0.88811 0.91436 1.24956 0.94754 0.94781 0.99320 1.69956 1.38480 1.16544 1.28062 0.86307 0.78488 0.79296 0.82652 1.19402 1.20713 1.20706 1.19505 0.95577 0.94047 0.94106 1.21200 0.98949 0.93857 0.96277 1.21019 0.96950 1.00575 0.93118 1.20735 1.01918 0.91813 0.91993 1.98373 1.87666 1.78479 1.38434 1.20657 0.99335 0.91654 0.94020 1.98378 1.67763 1.77253 1.59270 1.20929 0.97367 1.00890 0.91946 0.91143 0.92524 0.91460 0.94330 0.94659 0.92520 0.83694 0.84003 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.92 37.16 0.33 -1.66 16 2 C -0.03 -0.47 3.01 -27.88 -0.08 -0.56 16 3 H 0.09 1.39 7.87 -51.92 -0.41 0.98 16 4 S -0.29 -5.84 20.67 -107.50 -2.22 -8.06 16 5 C 0.09 2.22 5.39 36.01 0.19 2.41 16 6 C -0.51 -14.04 9.13 -34.44 -0.31 -14.35 16 7 H 0.07 1.86 7.71 -52.49 -0.40 1.46 16 8 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 10 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 C -0.03 -0.42 4.78 -104.63 -0.50 -0.92 16 15 C -0.08 -1.04 8.77 -39.58 -0.35 -1.39 16 16 C -0.10 -1.09 9.83 -39.55 -0.39 -1.48 16 17 C -0.04 -0.43 6.32 -39.47 -0.25 -0.68 16 18 Cl -0.06 -0.64 27.96 -51.86 -1.45 -2.09 16 19 C -0.03 -0.36 6.32 -39.46 -0.25 -0.61 16 20 Cl -0.06 -0.64 27.96 -51.86 -1.45 -2.09 16 21 C -0.09 -1.15 9.45 -39.55 -0.37 -1.52 16 22 H 0.07 1.11 6.92 -51.93 -0.36 0.75 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.90 7.40 -51.93 -0.38 0.52 16 25 H 0.04 0.98 7.14 -51.92 -0.37 0.61 16 26 H 0.04 0.92 8.14 -51.92 -0.42 0.49 16 27 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.15 1.75 7.59 -52.48 -0.40 1.35 16 29 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.14 1.62 7.94 -52.49 -0.42 1.20 16 LS Contribution 303.37 15.07 4.57 4.57 Total: -1.00 -27.93 303.37 -10.06 -37.99 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -3.15 Total: -2.63 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -2.08 Total: -19.05 kcal Atomic # 7 Polarization: -25.33 SS G_CDS: 0.74 Total: -24.59 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -5.84 SS G_CDS: -2.22 Total: -8.06 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -2.90 Total: -4.18 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.93 -10.06 -37.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079011108.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.948 kcal (2) G-P(sol) polarization free energy of solvation -27.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds