Wall clock time and date at job start Tue Mar 31 2020 06:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46966 * 2 1 4 4 C 1.50698 * 109.47181 * 119.99691 * 2 1 3 5 5 H 1.08004 * 119.99829 * 120.00216 * 4 2 1 6 6 C 1.37877 * 120.00028 * 300.00370 * 4 2 1 7 7 N 1.31515 * 120.00430 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99936 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47152 * 59.99813 * 8 6 4 10 10 H 1.48495 * 109.47206 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47035 * 300.00020 * 8 6 4 12 12 N 1.46495 * 109.47621 * 240.00154 * 2 1 3 13 13 C 1.46504 * 119.99798 * 300.00180 * 12 2 1 14 14 C 1.37777 * 120.00148 * 119.99505 * 12 2 1 15 15 N 1.30248 * 124.71716 * 359.96405 * 14 12 2 16 16 C 1.30907 * 117.27785 * 180.02562 * 15 14 12 17 17 Cl 1.73597 * 123.02218 * 180.02562 * 16 15 14 18 18 C 1.37035 * 113.95156 * 359.97438 * 16 15 14 19 19 C 1.41538 * 126.12208 * 180.02562 * 18 16 15 20 20 O 1.21700 * 119.99953 * 180.02562 * 19 18 16 21 21 O 1.34969 * 119.99733 * 0.02562 * 19 18 16 22 22 S 1.70908 * 124.71568 * 180.02562 * 14 12 2 23 23 H 1.09002 * 109.47418 * 299.99608 * 1 2 3 24 24 H 1.08993 * 109.47040 * 60.00150 * 1 2 3 25 25 H 1.09002 * 109.46512 * 180.02562 * 1 2 3 26 26 H 0.96997 * 119.99980 * 179.97438 * 7 6 4 27 27 H 1.09006 * 109.46492 * 269.99499 * 13 12 2 28 28 H 1.08997 * 109.47329 * 29.99085 * 13 12 2 29 29 H 1.08993 * 109.47161 * 149.99876 * 13 12 2 30 30 H 0.96701 * 113.99960 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.8063 -1.1208 4.0082 10 1 1.8269 -0.4198 5.2204 11 1 1.8258 -2.5201 4.0078 12 7 2.0185 -0.6905 -1.1961 13 6 1.6645 -2.0931 -1.4280 14 6 2.8105 -0.0209 -2.1030 15 7 3.1796 1.2230 -1.9892 16 6 3.9345 1.7142 -2.9392 17 17 4.5118 3.3513 -2.9376 18 6 4.2289 0.8194 -3.9345 19 6 5.0208 1.0755 -5.0793 20 8 5.2108 0.1946 -5.8972 21 8 5.5653 2.2966 -5.2637 22 16 3.4441 -0.7065 -3.5346 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 0.7089 1.1614 3.4844 27 1 2.4160 -2.7376 -0.9716 28 1 0.6906 -2.3002 -0.9846 29 1 1.6240 -2.2852 -2.5001 30 1 6.0887 2.3757 -6.0730 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087768244.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:29 Heat of formation + Delta-G solvation = -58.716547 kcal Electronic energy + Delta-G solvation = -18562.571078 eV Core-core repulsion = 15317.408377 eV Total energy + Delta-G solvation = -3245.162701 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.41245 -40.64116 -38.57450 -37.54779 -36.91890 -35.01678 -31.97331 -31.19153 -28.36359 -27.33368 -25.59350 -24.10490 -22.73901 -20.83758 -19.63103 -19.00884 -18.40374 -17.89937 -17.04480 -16.93467 -16.62521 -16.12981 -15.94573 -15.21030 -14.82184 -14.56959 -14.46642 -13.54234 -13.44590 -13.06942 -12.99741 -12.87523 -12.75301 -12.65684 -12.52900 -12.22192 -12.16524 -12.00751 -11.90692 -11.37330 -10.89275 -10.71682 -10.50639 -10.34599 -8.65861 -8.14950 -6.33785 -0.84473 -0.21009 0.09590 0.96912 1.24484 1.43528 1.45369 1.52042 1.93387 1.95594 2.41072 2.61880 3.12403 3.58357 3.90022 4.23255 4.49611 4.64035 4.70317 4.85896 4.89384 4.96075 5.26577 5.52341 5.54919 5.64309 5.91427 6.07343 6.16985 6.58461 6.77072 6.99209 7.36547 8.86349 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.023126 B = 0.004951 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.478546 B = 5654.365175 C = 6224.398450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.268 3.732 3 H 0.033 0.967 4 C -0.542 4.542 5 H 0.062 0.938 6 C 0.025 3.975 7 N -0.911 5.911 8 Si 0.960 3.040 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.263 1.263 12 N -0.528 5.528 13 C 0.077 3.923 14 C 0.335 3.665 15 N -0.596 5.596 16 C 0.271 3.729 17 Cl 0.026 6.974 18 C -0.405 4.405 19 C 0.580 3.420 20 O -0.559 6.559 21 O -0.486 6.486 22 S 0.250 5.750 23 H 0.073 0.927 24 H 0.024 0.976 25 H 0.051 0.949 26 H 0.266 0.734 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.916 -1.984 -11.820 12.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.165 3.835 3 H 0.051 0.949 4 C -0.581 4.581 5 H 0.080 0.920 6 C -0.176 4.176 7 N -0.550 5.550 8 Si 0.786 3.214 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.188 1.188 12 N -0.237 5.237 13 C -0.064 4.064 14 C -0.033 4.033 15 N -0.324 5.324 16 C 0.098 3.902 17 Cl 0.055 6.945 18 C -0.531 4.531 19 C 0.427 3.573 20 O -0.454 6.454 21 O -0.298 6.298 22 S 0.500 5.500 23 H 0.092 0.908 24 H 0.043 0.957 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.108 0.892 30 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 3.238 -2.898 -11.330 12.135 hybrid contribution 0.872 1.187 0.732 1.644 sum 4.110 -1.711 -10.599 11.496 Atomic orbital electron populations 1.21952 0.96475 1.00592 1.00530 1.18941 0.91930 0.92851 0.79768 0.94911 1.21468 1.32455 1.13404 0.90757 0.91972 1.25591 0.94904 0.95494 1.01636 1.69979 1.36813 1.23500 1.24663 0.85579 0.78332 0.79060 0.78468 1.20525 1.21097 1.18788 1.47184 1.44525 1.12159 1.19820 1.22152 1.03645 0.78176 1.02446 1.23946 0.93383 0.91028 0.94911 1.65599 1.23060 1.12461 1.31259 1.20999 0.91229 0.89699 0.88322 1.98399 1.85031 1.13457 1.97611 1.22977 1.23867 1.00310 1.05950 1.17362 0.76249 0.80692 0.82953 1.90919 1.61587 1.46669 1.46208 1.85144 1.64077 1.31479 1.49095 1.83427 1.45253 1.08408 1.12958 0.90830 0.95696 0.93013 0.92493 0.90584 0.88298 0.89249 0.71313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.92 8.95 71.98 0.64 -5.27 16 2 C 0.27 12.45 2.70 44.25 0.12 12.57 16 3 H 0.03 1.80 7.08 -2.39 -0.02 1.78 16 4 C -0.54 -26.95 8.37 25.60 0.21 -26.74 16 5 H 0.06 3.01 7.65 -2.91 -0.02 2.98 16 6 C 0.02 1.25 5.30 84.65 0.45 1.70 16 7 N -0.91 -49.06 11.32 21.45 0.24 -48.81 16 8 Si 0.96 40.66 29.54 68.60 2.03 42.69 16 9 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 10 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 12 N -0.53 -19.98 2.83 -716.25 -2.03 -22.01 16 13 C 0.08 2.14 9.63 127.77 1.23 3.37 16 14 C 0.34 12.50 7.72 179.44 1.38 13.88 16 15 N -0.60 -24.48 9.44 -191.33 -1.81 -26.28 16 16 C 0.27 9.72 7.41 84.55 0.63 10.35 16 17 Cl 0.03 0.82 27.10 -2.72 -0.07 0.75 16 18 C -0.40 -13.27 6.32 22.80 0.14 -13.13 16 19 C 0.58 17.13 8.07 68.63 0.55 17.69 16 20 O -0.56 -18.41 17.60 19.18 0.34 -18.08 16 21 O -0.49 -10.81 11.31 -58.87 -0.67 -11.48 16 22 S 0.25 7.50 21.36 -56.49 -1.21 6.29 16 23 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 24 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.05 2.00 6.66 -2.39 -0.02 1.98 16 26 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 27 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.10 2.65 6.43 -2.39 -0.02 2.63 16 29 H 0.09 1.91 7.01 -2.39 -0.02 1.89 16 30 H 0.43 4.97 8.98 -74.06 -0.67 4.30 16 Total: -1.00 -62.56 290.77 2.74 -59.83 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: 0.54 Total: 2.68 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 5.37 Total: 14.42 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -3.59 Total: -97.11 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.33 Total: -29.55 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Atomic # 16 Polarization: 7.50 SS G_CDS: -1.21 Total: 6.29 kcal Atomic # 17 Polarization: 0.82 SS G_CDS: -0.07 Total: 0.75 kcal Total: -62.56 2.74 -59.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087768244.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.111 kcal (2) G-P(sol) polarization free energy of solvation -62.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds