Wall clock time and date at job start Tue Mar 31 2020 06:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46609 * 2 1 4 4 C 1.50698 * 109.46836 * 240.00767 * 2 1 3 5 5 H 1.08001 * 119.99746 * 275.00691 * 4 2 1 6 6 C 1.37874 * 120.00323 * 95.01829 * 4 2 1 7 7 N 1.31520 * 120.00009 * 184.89680 * 6 4 2 8 8 Si 1.86801 * 119.99976 * 4.89114 * 6 4 2 9 9 H 1.48500 * 109.46990 * 84.80589 * 8 6 4 10 10 H 1.48506 * 109.47253 * 204.80341 * 8 6 4 11 11 H 1.48504 * 109.47116 * 324.80434 * 8 6 4 12 12 N 1.46499 * 109.47585 * 120.00332 * 2 1 3 13 13 C 1.46499 * 119.99872 * 59.99874 * 12 2 1 14 14 C 1.37773 * 120.00099 * 240.00301 * 12 2 1 15 15 N 1.30254 * 124.71770 * 359.69682 * 14 12 2 16 16 C 1.30909 * 117.28028 * 179.76666 * 15 14 12 17 17 Cl 1.73598 * 123.02560 * 180.24493 * 16 15 14 18 18 C 1.37036 * 113.94760 * 0.51448 * 16 15 14 19 19 C 1.41538 * 126.11942 * 179.72406 * 18 16 15 20 20 O 1.21698 * 120.00176 * 179.97438 * 19 18 16 21 21 O 1.34973 * 119.99848 * 0.02562 * 19 18 16 22 22 S 1.70914 * 124.71820 * 179.97438 * 14 12 2 23 23 H 1.09003 * 109.47000 * 294.83286 * 1 2 3 24 24 H 1.08997 * 109.47338 * 54.83798 * 1 2 3 25 25 H 1.09003 * 109.46721 * 174.83648 * 1 2 3 26 26 H 0.97008 * 119.99917 * 179.97438 * 7 6 4 27 27 H 1.09006 * 109.47010 * 89.99858 * 13 12 2 28 28 H 1.08999 * 109.47121 * 210.00078 * 13 12 2 29 29 H 1.08997 * 109.47172 * 330.00336 * 13 12 2 30 30 H 0.96700 * 113.99800 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.1353 -1.7853 -1.2293 6 6 2.3605 0.0124 -2.3580 7 7 2.7065 -0.6128 -3.4621 8 14 2.3137 1.8793 -2.3172 9 1 3.5988 2.3951 -1.7808 10 1 2.1070 2.3995 -3.6927 11 1 1.1980 2.3276 -1.4456 12 7 2.0184 -0.6907 1.1961 13 6 1.6646 -2.0932 1.4278 14 6 2.8105 -0.0211 2.1030 15 7 3.1848 1.2210 1.9861 16 6 3.9355 1.7137 2.9387 17 17 4.5131 3.3507 2.9370 18 6 4.2290 0.8191 3.9344 19 6 5.0209 1.0752 5.0793 20 8 5.2102 0.1945 5.8976 21 8 5.5651 2.2964 5.2639 22 16 3.4442 -0.7068 3.5346 23 1 -0.3633 0.4316 0.9327 24 1 -0.3634 0.5918 -0.8401 25 1 -0.3633 -1.0235 -0.0925 26 1 2.9371 -0.1044 -4.2555 27 1 2.4159 -2.7377 0.9714 28 1 1.6240 -2.2853 2.5000 29 1 0.6906 -2.3002 0.9845 30 1 6.0884 2.3755 6.0733 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087768246.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:33 Heat of formation + Delta-G solvation = -40.400497 kcal Electronic energy + Delta-G solvation = -18709.991456 eV Core-core repulsion = 15465.622998 eV Total energy + Delta-G solvation = -3244.368458 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.16654 -39.37241 -37.24020 -36.27385 -35.78580 -33.04587 -30.93861 -30.11329 -27.15340 -25.55316 -24.18486 -22.82638 -21.25391 -19.31352 -18.39114 -17.77292 -17.11916 -16.69992 -15.81059 -15.50656 -15.07780 -14.89222 -14.32475 -13.84092 -13.49870 -13.33674 -12.75787 -12.55882 -12.29518 -11.87952 -11.73160 -11.61901 -11.43258 -11.25820 -10.90201 -10.78654 -10.74708 -10.62580 -9.98495 -9.83542 -9.45046 -9.30902 -9.04068 -8.81232 -7.27614 -6.37905 -4.42923 0.46370 1.06973 1.38257 2.23436 2.54169 3.12227 3.21142 3.24456 3.26784 3.32576 3.72637 4.20242 4.84088 5.01497 5.14966 5.36596 5.59960 5.85571 5.86706 6.00067 6.15764 6.26444 6.52485 6.55981 6.71728 7.15047 7.30292 7.35170 7.88903 8.04590 8.17039 8.62127 9.21549 10.72914 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.020055 B = 0.006139 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.797514 B = 4559.918114 C = 5474.814371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.223 3.777 3 H 0.074 0.926 4 C -0.531 4.531 5 H 0.081 0.919 6 C 0.085 3.915 7 N -0.881 5.881 8 Si 0.871 3.129 9 H -0.266 1.266 10 H -0.285 1.285 11 H -0.261 1.261 12 N -0.513 5.513 13 C 0.081 3.919 14 C 0.356 3.644 15 N -0.567 5.567 16 C 0.285 3.715 17 Cl 0.014 6.986 18 C -0.393 4.393 19 C 0.573 3.427 20 O -0.539 6.539 21 O -0.495 6.495 22 S 0.189 5.811 23 H 0.030 0.970 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.270 0.730 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.154 2.609 13.096 13.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.122 3.878 3 H 0.092 0.908 4 C -0.570 4.570 5 H 0.099 0.901 6 C -0.121 4.121 7 N -0.516 5.516 8 Si 0.697 3.303 9 H -0.191 1.191 10 H -0.211 1.211 11 H -0.186 1.186 12 N -0.221 5.221 13 C -0.062 4.062 14 C -0.013 4.013 15 N -0.295 5.295 16 C 0.111 3.889 17 Cl 0.042 6.958 18 C -0.519 4.519 19 C 0.420 3.580 20 O -0.432 6.432 21 O -0.305 6.305 22 S 0.438 5.562 23 H 0.049 0.951 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -0.386 1.579 12.503 12.608 hybrid contribution 0.766 2.108 0.158 2.248 sum 0.380 3.686 12.661 13.192 Atomic orbital electron populations 1.22257 0.97321 1.01378 0.99803 1.19762 0.91409 0.95120 0.81514 0.90778 1.21038 1.45807 0.95793 0.94332 0.90082 1.24946 0.93253 0.98748 0.95116 1.69870 1.43552 1.36432 1.01742 0.86929 0.80270 0.85615 0.77445 1.19125 1.21082 1.18603 1.47604 1.43940 1.10816 1.19716 1.21932 1.03260 0.80474 1.00510 1.23826 0.93002 0.90827 0.93605 1.65557 1.22577 1.11400 1.29932 1.20850 0.91026 0.88794 0.88236 1.98407 1.85290 1.14427 1.97644 1.22554 1.23985 0.99610 1.05749 1.17535 0.76619 0.80136 0.83745 1.90925 1.60800 1.45831 1.45670 1.85189 1.64272 1.33436 1.47577 1.83800 1.46822 1.09998 1.15586 0.95091 0.91809 0.92747 0.91982 0.90842 0.92000 0.88844 0.74069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.04 37.16 0.34 -2.43 16 2 C 0.22 4.80 2.36 -69.08 -0.16 4.64 16 3 H 0.07 1.74 4.24 -51.93 -0.22 1.52 16 4 C -0.53 -13.36 8.82 -34.44 -0.30 -13.67 16 5 H 0.08 2.16 7.67 -52.49 -0.40 1.76 16 6 C 0.09 2.28 5.47 -17.82 -0.10 2.18 16 7 N -0.88 -24.95 13.96 55.43 0.77 -24.18 16 8 Si 0.87 20.64 26.99 -169.99 -4.59 16.05 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.26 -5.91 6.82 56.52 0.39 -5.52 16 12 N -0.51 -9.56 2.83 -177.74 -0.50 -10.06 16 13 C 0.08 1.17 9.49 59.85 0.57 1.73 16 14 C 0.36 6.62 7.72 -88.03 -0.68 5.94 16 15 N -0.57 -11.42 9.44 -11.82 -0.11 -11.53 16 16 C 0.28 5.15 7.41 -18.38 -0.14 5.01 16 17 Cl 0.01 0.22 27.10 -51.86 -1.41 -1.19 16 18 C -0.39 -6.68 6.32 -38.76 -0.24 -6.92 16 19 C 0.57 8.99 8.07 31.99 0.26 9.25 16 20 O -0.54 -9.44 17.60 -19.42 -0.34 -9.79 16 21 O -0.50 -6.04 11.31 -41.24 -0.47 -6.51 16 22 S 0.19 2.98 21.36 -107.50 -2.30 0.69 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.05 0.93 6.88 -51.93 -0.36 0.57 16 26 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.71 7.01 -51.93 -0.36 0.35 16 29 H 0.09 1.25 6.53 -51.93 -0.34 0.91 16 30 H 0.40 2.90 8.98 45.56 0.41 3.31 16 LS Contribution 290.38 15.07 4.38 4.38 Total: -1.00 -30.72 290.38 -6.72 -37.43 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -1.69 Total: -1.03 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -0.46 Total: 5.73 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.16 Total: -45.77 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.81 Total: -16.30 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.59 Total: 16.05 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -2.30 Total: 0.69 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -1.41 Total: -1.19 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.72 -6.72 -37.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087768246.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.966 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds