Wall clock time and date at job start Tue Mar 31 2020 06:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46609 * 2 1 4 4 C 1.50698 * 109.46836 * 240.00767 * 2 1 3 5 5 H 1.08001 * 119.99746 * 275.00691 * 4 2 1 6 6 C 1.37874 * 120.00323 * 95.01829 * 4 2 1 7 7 N 1.31520 * 120.00009 * 184.89680 * 6 4 2 8 8 Si 1.86801 * 119.99976 * 4.89114 * 6 4 2 9 9 H 1.48500 * 109.46990 * 84.80589 * 8 6 4 10 10 H 1.48506 * 109.47253 * 204.80341 * 8 6 4 11 11 H 1.48504 * 109.47116 * 324.80434 * 8 6 4 12 12 N 1.46499 * 109.47585 * 120.00332 * 2 1 3 13 13 C 1.46499 * 119.99872 * 59.99874 * 12 2 1 14 14 C 1.37773 * 120.00099 * 240.00301 * 12 2 1 15 15 N 1.30254 * 124.71770 * 359.69682 * 14 12 2 16 16 C 1.30909 * 117.28028 * 179.76666 * 15 14 12 17 17 Cl 1.73598 * 123.02560 * 180.24493 * 16 15 14 18 18 C 1.37036 * 113.94760 * 0.51448 * 16 15 14 19 19 C 1.41538 * 126.11942 * 179.72406 * 18 16 15 20 20 O 1.21698 * 120.00176 * 179.97438 * 19 18 16 21 21 O 1.34973 * 119.99848 * 0.02562 * 19 18 16 22 22 S 1.70914 * 124.71820 * 179.97438 * 14 12 2 23 23 H 1.09003 * 109.47000 * 294.83286 * 1 2 3 24 24 H 1.08997 * 109.47338 * 54.83798 * 1 2 3 25 25 H 1.09003 * 109.46721 * 174.83648 * 1 2 3 26 26 H 0.97008 * 119.99917 * 179.97438 * 7 6 4 27 27 H 1.09006 * 109.47010 * 89.99858 * 13 12 2 28 28 H 1.08999 * 109.47121 * 210.00078 * 13 12 2 29 29 H 1.08997 * 109.47172 * 330.00336 * 13 12 2 30 30 H 0.96700 * 113.99800 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.1353 -1.7853 -1.2293 6 6 2.3605 0.0124 -2.3580 7 7 2.7065 -0.6128 -3.4621 8 14 2.3137 1.8793 -2.3172 9 1 3.5988 2.3951 -1.7808 10 1 2.1070 2.3995 -3.6927 11 1 1.1980 2.3276 -1.4456 12 7 2.0184 -0.6907 1.1961 13 6 1.6646 -2.0932 1.4278 14 6 2.8105 -0.0211 2.1030 15 7 3.1848 1.2210 1.9861 16 6 3.9355 1.7137 2.9387 17 17 4.5131 3.3507 2.9370 18 6 4.2290 0.8191 3.9344 19 6 5.0209 1.0752 5.0793 20 8 5.2102 0.1945 5.8976 21 8 5.5651 2.2964 5.2639 22 16 3.4442 -0.7068 3.5346 23 1 -0.3633 0.4316 0.9327 24 1 -0.3634 0.5918 -0.8401 25 1 -0.3633 -1.0235 -0.0925 26 1 2.9371 -0.1044 -4.2555 27 1 2.4159 -2.7377 0.9714 28 1 1.6240 -2.2853 2.5000 29 1 0.6906 -2.3002 0.9845 30 1 6.0884 2.3755 6.0733 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087768246.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:32 Heat of formation + Delta-G solvation = -60.876955 kcal Electronic energy + Delta-G solvation = -18710.879382 eV Core-core repulsion = 15465.622998 eV Total energy + Delta-G solvation = -3245.256384 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.44459 -40.68157 -38.64597 -37.59069 -36.93583 -34.89746 -32.55909 -31.47347 -28.40946 -27.34068 -25.62122 -24.12668 -22.67509 -20.75100 -19.75640 -19.15006 -18.87655 -17.96936 -17.12901 -16.90572 -16.60243 -16.20102 -15.86881 -15.31308 -14.79242 -14.63828 -14.51792 -14.19442 -13.54510 -13.32007 -13.08642 -12.96685 -12.92035 -12.58928 -12.55214 -12.37161 -12.05334 -11.94062 -11.86360 -11.41760 -10.96798 -10.82310 -10.74313 -10.38771 -8.65325 -8.40294 -6.45882 -0.87269 -0.23996 0.06732 0.92973 1.20631 1.28791 1.36588 1.41613 1.87122 1.91858 2.25761 2.58652 3.00613 3.54267 3.85809 4.19596 4.37085 4.47691 4.66275 4.68911 4.72784 4.82337 5.05100 5.26727 5.46319 5.53144 5.73839 5.75795 6.25267 6.53032 6.62201 6.97309 7.21521 8.74274 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.020055 B = 0.006139 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.797514 B = 4559.918114 C = 5474.814371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.228 3.772 3 H 0.056 0.944 4 C -0.522 4.522 5 H 0.057 0.943 6 C 0.036 3.964 7 N -0.929 5.929 8 Si 0.919 3.081 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.244 1.244 12 N -0.526 5.526 13 C 0.077 3.923 14 C 0.335 3.665 15 N -0.600 5.600 16 C 0.270 3.730 17 Cl 0.026 6.974 18 C -0.401 4.401 19 C 0.580 3.420 20 O -0.558 6.558 21 O -0.486 6.486 22 S 0.254 5.746 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.269 0.731 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 3.016 15.338 15.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.124 3.876 3 H 0.074 0.926 4 C -0.561 4.561 5 H 0.075 0.925 6 C -0.165 4.165 7 N -0.568 5.568 8 Si 0.744 3.256 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.167 1.167 12 N -0.235 5.235 13 C -0.064 4.064 14 C -0.033 4.033 15 N -0.329 5.329 16 C 0.097 3.903 17 Cl 0.054 6.946 18 C -0.528 4.528 19 C 0.427 3.573 20 O -0.453 6.453 21 O -0.298 6.298 22 S 0.504 5.496 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.121 0.879 30 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -0.707 2.000 14.799 14.951 hybrid contribution 0.967 1.962 -0.328 2.211 sum 0.260 3.962 14.471 15.006 Atomic orbital electron populations 1.22134 0.94958 1.02430 1.00603 1.19486 0.93052 0.93812 0.81205 0.92584 1.21281 1.44185 0.94894 0.95710 0.92490 1.25578 0.93757 1.02084 0.95097 1.69979 1.46536 1.37704 1.02538 0.86171 0.80059 0.81797 0.77611 1.20491 1.20807 1.16749 1.47275 1.44762 1.12094 1.19346 1.22152 1.03509 0.78138 1.02633 1.23967 0.93317 0.91068 0.94956 1.65550 1.23462 1.12602 1.31240 1.20961 0.91394 0.89658 0.88299 1.98402 1.85071 1.13459 1.97620 1.22988 1.23653 1.00258 1.05892 1.17374 0.76269 0.80707 0.82980 1.90925 1.61513 1.46673 1.46167 1.85142 1.64081 1.31456 1.49116 1.83518 1.44978 1.08275 1.12814 0.92977 0.92549 0.91360 0.92154 0.91420 0.88882 0.87872 0.71291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 9.04 71.98 0.65 -4.38 16 2 C 0.23 9.57 2.36 44.24 0.10 9.68 16 3 H 0.06 2.58 4.24 -2.39 -0.01 2.57 16 4 C -0.52 -26.45 8.82 25.60 0.23 -26.23 16 5 H 0.06 3.10 7.67 -2.91 -0.02 3.08 16 6 C 0.04 1.93 5.47 84.65 0.46 2.39 16 7 N -0.93 -54.09 13.96 21.45 0.30 -53.79 16 8 Si 0.92 42.93 26.99 68.60 1.85 44.78 16 9 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.24 -10.57 6.82 99.48 0.68 -9.89 16 12 N -0.53 -18.83 2.83 -716.25 -2.03 -20.86 16 13 C 0.08 2.06 9.49 127.77 1.21 3.28 16 14 C 0.33 11.90 7.72 179.44 1.39 13.28 16 15 N -0.60 -23.42 9.44 -191.32 -1.81 -25.23 16 16 C 0.27 9.32 7.41 84.55 0.63 9.94 16 17 Cl 0.03 0.78 27.10 -2.72 -0.07 0.70 16 18 C -0.40 -12.76 6.32 22.80 0.14 -12.62 16 19 C 0.58 16.68 8.07 68.63 0.55 17.24 16 20 O -0.56 -18.06 17.60 19.19 0.34 -17.72 16 21 O -0.49 -10.47 11.31 -58.91 -0.67 -11.14 16 22 S 0.25 7.39 21.36 -56.49 -1.21 6.18 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.07 2.19 6.88 -2.39 -0.02 2.17 16 26 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 27 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.09 1.86 7.01 -2.39 -0.02 1.85 16 29 H 0.10 2.54 6.53 -2.39 -0.02 2.52 16 30 H 0.43 4.74 8.98 -74.06 -0.67 4.07 16 Total: -1.00 -66.08 290.38 2.59 -63.49 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: 0.52 Total: 0.98 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 5.37 Total: 12.59 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -3.54 Total: -99.87 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.33 Total: -28.86 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.85 Total: 44.78 kcal Atomic # 16 Polarization: 7.39 SS G_CDS: -1.21 Total: 6.18 kcal Atomic # 17 Polarization: 0.78 SS G_CDS: -0.07 Total: 0.70 kcal Total: -66.08 2.59 -63.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087768246.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.617 kcal (2) G-P(sol) polarization free energy of solvation -66.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds