Wall clock time and date at job start Tue Mar 31 2020 06:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00005 * 2 1 4 4 H 1.48507 * 109.46948 * 269.99521 * 3 2 1 5 5 H 1.48494 * 109.47476 * 29.99703 * 3 2 1 6 6 H 1.48501 * 109.47248 * 149.99979 * 3 2 1 7 7 C 1.37870 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99876 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00278 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47392 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47552 * 180.02562 * 10 9 7 12 12 S 1.81390 * 109.47446 * 180.02562 * 11 10 9 13 13 C 1.76201 * 103.00300 * 179.97438 * 12 11 10 14 14 C 1.38991 * 120.05700 * 0.02562 * 13 12 11 15 15 C 1.38078 * 119.95284 * 179.97438 * 14 13 12 16 16 C 1.38386 * 120.08396 * 359.97438 * 15 14 13 17 17 Cl 1.73602 * 119.94138 * 180.27847 * 16 15 14 18 18 C 1.38495 * 120.12122 * 0.02562 * 16 15 14 19 19 Cl 1.73601 * 119.97710 * 180.02562 * 18 16 15 20 20 C 1.38217 * 120.04287 * 359.97438 * 18 16 15 21 21 H 0.97002 * 119.99943 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47066 * 59.99680 * 9 7 2 23 23 H 1.09000 * 109.46967 * 299.99514 * 9 7 2 24 24 H 1.08994 * 109.47334 * 59.99581 * 10 9 7 25 25 H 1.09006 * 109.47070 * 300.00079 * 10 9 7 26 26 H 1.08994 * 109.47329 * 59.99350 * 11 10 9 27 27 H 1.09006 * 109.46812 * 300.00009 * 11 10 9 28 28 H 1.08000 * 120.02200 * 0.02562 * 14 13 12 29 29 H 1.08006 * 119.95590 * 180.02562 * 15 14 13 30 30 H 1.08001 * 120.03949 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 16 2.6589 -6.3658 0.0007 13 6 1.6115 -7.7828 0.0006 14 6 0.2303 -7.6276 -0.0005 15 6 -0.5884 -8.7394 -0.0011 16 6 -0.0355 -10.0080 -0.0012 17 17 -1.0683 -11.4034 -0.0093 18 6 1.3404 -10.1665 -0.0001 19 17 2.0300 -11.7597 -0.0008 20 6 2.1647 -9.0571 0.0005 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8718 -3.6044 0.8904 25 1 2.8718 -3.6044 -0.8895 26 1 0.8537 -5.0446 -0.8902 27 1 0.8532 -5.0451 0.8897 28 1 -0.2022 -6.6380 -0.0018 29 1 -1.6617 -8.6189 -0.0024 30 1 3.2376 -9.1807 0.0018 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088304116.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:00 Heat of formation + Delta-G solvation = -25.560372 kcal Electronic energy + Delta-G solvation = -15080.548445 eV Core-core repulsion = 12245.239917 eV Total energy + Delta-G solvation = -2835.308528 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.38049 -37.62769 -37.57225 -36.40527 -34.11229 -32.18098 -31.93456 -29.41493 -25.59545 -24.16719 -23.92632 -22.09641 -19.15157 -18.50936 -17.69609 -17.02943 -16.59149 -16.28385 -16.13893 -15.38294 -15.23649 -14.98392 -14.47349 -13.80961 -13.75290 -13.40158 -13.07957 -12.96919 -12.88261 -12.69305 -12.67455 -12.41459 -12.16583 -11.93965 -11.67068 -11.48855 -11.24790 -11.08906 -10.59310 -10.55224 -10.06112 -8.51294 -8.20767 -6.31075 -0.30778 -0.06308 0.31240 0.74256 1.14488 1.35195 1.42077 1.42267 1.53465 2.21110 2.41605 3.13491 3.50470 3.85256 3.97456 3.97567 4.01466 4.08963 4.52206 4.56334 4.60683 4.78960 4.86935 4.92911 4.94136 5.13383 5.32869 5.50081 5.68981 5.83187 6.22737 6.85066 7.38342 8.90786 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.040991 B = 0.002678 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.906520 B =10453.553508 C =11110.708744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.031 3.969 10 C -0.083 4.083 11 C -0.095 4.095 12 S -0.105 6.105 13 C -0.074 4.074 14 C -0.124 4.124 15 C -0.072 4.072 16 C -0.050 4.050 17 Cl -0.047 7.047 18 C -0.018 4.018 19 Cl -0.043 7.043 20 C -0.089 4.089 21 H 0.264 0.736 22 H -0.001 1.001 23 H -0.001 1.001 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.148 0.852 29 H 0.167 0.833 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.539 -22.661 -0.010 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.123 4.123 11 C -0.243 4.243 12 S 0.142 5.858 13 C -0.188 4.188 14 C -0.149 4.149 15 C -0.092 4.092 16 C -0.080 4.080 17 Cl -0.018 7.018 18 C -0.047 4.047 19 Cl -0.013 7.013 20 C -0.113 4.113 21 H 0.073 0.927 22 H 0.018 0.982 23 H 0.018 0.982 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.166 0.834 29 H 0.185 0.815 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.634 -22.636 -0.006 22.695 hybrid contribution -1.238 0.646 -0.011 1.397 sum 0.396 -21.990 -0.017 21.993 Atomic orbital electron populations 1.70071 1.07648 1.27803 1.51596 1.25908 0.95744 1.03161 0.94744 0.85502 0.78728 0.78706 0.78473 1.19843 1.20809 1.18844 1.21674 0.93617 0.92331 1.50630 0.92204 1.18972 0.94150 0.92099 0.95567 1.21192 0.98192 0.91052 1.01814 1.23794 0.99798 0.94599 1.06105 1.85628 1.13470 0.95787 1.90900 1.21965 0.97013 0.97162 1.02657 1.21518 0.91645 1.00507 1.01195 1.21183 1.02001 0.88758 0.97286 1.20855 0.89568 0.90048 1.07569 1.98386 1.66333 1.40255 1.96778 1.20669 0.91439 0.87717 1.04899 1.98391 1.84417 1.21872 1.96670 1.20684 1.00846 0.88428 1.01389 0.92731 0.98241 0.98220 0.92115 0.92107 0.88836 0.88844 0.83434 0.81541 0.82676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.86 13.29 21.44 0.28 -54.58 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 7 C -0.54 -29.84 9.11 25.60 0.23 -29.61 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.03 1.53 4.97 29.85 0.15 1.68 16 10 C -0.08 -3.14 5.16 30.59 0.16 -2.99 16 11 C -0.09 -2.81 4.33 71.98 0.31 -2.49 16 12 S -0.11 -2.76 21.92 -56.49 -1.24 -4.00 16 13 C -0.07 -1.71 6.11 22.61 0.14 -1.57 16 14 C -0.12 -2.62 9.36 22.41 0.21 -2.41 16 15 C -0.07 -1.33 9.82 22.27 0.22 -1.11 16 16 C -0.05 -0.98 6.32 22.37 0.14 -0.84 16 17 Cl -0.05 -0.85 27.95 -2.72 -0.08 -0.92 16 18 C -0.02 -0.36 6.32 22.33 0.14 -0.22 16 19 Cl -0.04 -0.80 27.95 -2.72 -0.08 -0.88 16 20 C -0.09 -1.87 9.57 22.43 0.21 -1.66 16 21 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 22 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 23 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 24 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 26 H 0.09 2.64 7.75 -2.39 -0.02 2.62 16 27 H 0.09 2.64 7.75 -2.39 -0.02 2.62 16 28 H 0.15 2.97 5.88 -2.91 -0.02 2.95 16 29 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 30 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -59.10 304.61 4.45 -54.66 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: 1.15 Total: 1.18 kcal Atomic # 6 Polarization: -43.01 SS G_CDS: 2.38 Total: -40.63 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.28 Total: -54.58 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -1.24 Total: -4.00 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.15 Total: -1.80 kcal Total: -59.10 4.45 -54.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088304116.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.096 kcal (2) G-P(sol) polarization free energy of solvation -59.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds