Wall clock time and date at job start Tue Mar 31 2020 06:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.34967 * 117.00331 * 2 1 4 4 O 1.21704 * 119.99986 * 359.97438 * 3 2 1 5 5 C 1.41540 * 120.00002 * 179.97438 * 3 2 1 6 6 S 1.76184 * 126.12269 * 359.97423 * 5 3 2 7 7 C 1.70905 * 90.44783 * 179.97438 * 6 5 3 8 8 N 1.37777 * 124.71829 * 179.97438 * 7 6 5 9 9 C 1.46499 * 119.99872 * 179.72453 * 8 7 6 10 10 H 1.08999 * 109.47228 * 325.27728 * 9 8 7 11 11 C 1.52999 * 109.47341 * 85.27888 * 9 8 7 12 12 C 1.50706 * 109.47303 * 205.27753 * 9 8 7 13 13 H 1.07998 * 119.99769 * 0.02562 * 12 9 8 14 14 C 1.37877 * 120.00286 * 179.97438 * 12 9 8 15 15 N 1.31515 * 119.99896 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 119.99872 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47221 * 60.00660 * 16 14 12 18 18 H 1.48504 * 109.46710 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47441 * 300.00053 * 16 14 12 20 20 N 1.30255 * 110.56353 * 0.26593 * 7 6 5 21 21 C 1.30908 * 117.27721 * 359.49721 * 20 7 6 22 22 Cl 1.73602 * 123.02104 * 180.24506 * 21 20 7 23 23 H 1.09008 * 109.46722 * 60.00346 * 1 2 3 24 24 H 1.09000 * 109.47344 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47461 * 300.00837 * 1 2 3 26 26 H 0.97001 * 120.00278 * 0.02562 * 8 7 6 27 27 H 1.08999 * 109.47091 * 59.99755 * 11 9 8 28 28 H 1.08996 * 109.47098 * 180.02562 * 11 9 8 29 29 H 1.09001 * 109.46823 * 300.00095 * 11 9 8 30 30 H 0.96999 * 119.99952 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0418 1.2025 0.0000 4 8 1.3790 2.2233 -0.0005 5 6 3.4553 1.2765 0.0005 6 16 4.5669 -0.0904 0.0019 7 6 5.9012 0.9775 0.0010 8 7 7.2215 0.5837 0.0020 9 6 8.2861 1.5901 -0.0050 10 1 7.9693 2.4500 -0.5951 11 6 8.5766 2.0352 1.4296 12 6 9.5332 0.9980 -0.6095 13 1 9.5326 -0.0254 -0.9544 14 6 10.6745 1.7632 -0.7233 15 7 10.6750 3.0096 -0.3038 16 14 12.2199 1.0294 -1.4732 17 1 11.9375 0.5975 -2.8656 18 1 13.2991 2.0496 -1.4802 19 1 12.6521 -0.1421 -0.6695 20 7 5.4964 2.2156 0.0055 21 6 4.2040 2.4242 -0.0005 22 17 3.5021 4.0120 -0.0020 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 7.4462 -0.3599 0.0029 27 1 8.8934 1.1753 2.0198 28 1 9.3684 2.7843 1.4243 29 1 7.6746 2.4635 1.8669 30 1 11.4780 3.5478 -0.3835 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092640140.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:24 Heat of formation + Delta-G solvation = -42.066607 kcal Electronic energy + Delta-G solvation = -18181.794251 eV Core-core repulsion = 14937.353545 eV Total energy + Delta-G solvation = -3244.440706 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.40947 -39.42709 -36.83040 -36.21032 -35.83912 -33.01428 -30.49597 -29.19149 -27.41595 -25.53638 -24.64680 -22.63253 -21.16603 -19.41130 -19.01883 -17.52142 -16.83499 -16.41314 -16.40093 -15.47723 -15.20000 -14.91151 -14.64746 -13.92146 -13.39003 -13.19339 -12.72785 -12.41479 -12.21326 -11.77558 -11.68158 -11.25750 -11.11495 -10.97887 -10.88758 -10.67594 -10.55768 -10.40569 -10.24271 -9.75016 -9.41993 -9.30470 -9.10711 -8.66313 -7.38818 -6.30958 -4.42893 0.48711 1.13165 1.39139 2.31726 2.56416 2.96490 3.15624 3.20486 3.21908 3.22348 3.71439 4.20633 4.92339 5.02215 5.10084 5.17269 5.28336 5.48720 5.60401 6.46034 6.50715 6.74715 6.82835 6.96542 7.23181 7.41800 7.61544 7.81629 7.89850 7.93236 8.20117 8.60989 9.24760 10.74585 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.029923 B = 0.004111 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.518494 B = 6808.816449 C = 7468.942411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.358 6.358 3 C 0.554 3.446 4 O -0.506 6.506 5 C -0.376 4.376 6 S 0.150 5.850 7 C 0.367 3.633 8 N -0.630 5.630 9 C 0.266 3.734 10 H 0.061 0.939 11 C -0.148 4.148 12 C -0.545 4.545 13 H 0.064 0.936 14 C 0.072 3.928 15 N -0.878 5.878 16 Si 0.906 3.094 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.275 1.275 20 N -0.554 5.554 21 C 0.292 3.708 22 Cl 0.020 6.980 23 H 0.058 0.942 24 H 0.097 0.903 25 H 0.058 0.942 26 H 0.412 0.588 27 H 0.029 0.971 28 H 0.096 0.904 29 H 0.019 0.981 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.338 -6.340 1.262 14.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.275 6.275 3 C 0.401 3.599 4 O -0.397 6.397 5 C -0.503 4.503 6 S 0.398 5.602 7 C -0.005 4.005 8 N -0.258 5.258 9 C 0.163 3.837 10 H 0.079 0.921 11 C -0.207 4.207 12 C -0.584 4.584 13 H 0.082 0.918 14 C -0.133 4.133 15 N -0.515 5.515 16 Si 0.733 3.267 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 N -0.282 5.282 21 C 0.119 3.881 22 Cl 0.049 6.951 23 H 0.077 0.923 24 H 0.116 0.884 25 H 0.077 0.923 26 H 0.249 0.751 27 H 0.048 0.952 28 H 0.115 0.885 29 H 0.038 0.962 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.895 -6.356 1.287 14.434 hybrid contribution 0.424 0.397 -0.374 0.691 sum -12.471 -5.959 0.913 13.852 Atomic orbital electron populations 1.22808 0.77201 1.03201 1.02298 1.86194 1.22992 1.32966 1.85334 1.17845 0.86682 0.81710 0.73623 1.90919 1.65877 1.35152 1.47738 1.22348 0.95381 0.95020 1.37542 1.83898 0.94107 1.07597 1.74574 1.23803 0.92898 0.91238 0.92546 1.45545 1.00023 1.11724 1.68552 1.19208 0.82614 0.86932 0.94931 0.92091 1.22118 1.00732 1.01285 0.96545 1.21080 0.95395 0.99295 1.42597 0.91816 1.24855 0.98867 0.94742 0.94847 1.69871 1.29396 1.07229 1.44978 0.86429 0.81736 0.78817 0.79714 1.20016 1.20952 1.20016 1.65738 1.13234 1.19022 1.30198 1.20720 0.87224 0.88110 0.92074 1.98423 1.80865 1.20280 1.95571 0.92297 0.88416 0.92313 0.75070 0.95157 0.88518 0.96172 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.45 101.05 1.06 1.44 16 2 O -0.36 -4.91 10.27 -41.23 -0.42 -5.33 16 3 C 0.55 8.99 7.72 31.99 0.25 9.24 16 4 O -0.51 -8.91 14.77 -19.42 -0.29 -9.20 16 5 C -0.38 -6.35 6.32 -38.76 -0.25 -6.59 16 6 S 0.15 2.19 22.98 -107.50 -2.47 -0.28 16 7 C 0.37 6.59 8.01 -88.02 -0.71 5.88 16 8 N -0.63 -11.68 5.19 -57.03 -0.30 -11.97 16 9 C 0.27 6.08 2.68 -69.08 -0.18 5.89 16 10 H 0.06 1.60 7.74 -51.93 -0.40 1.20 16 11 C -0.15 -3.34 9.27 37.16 0.34 -3.00 16 12 C -0.55 -13.28 8.73 -34.44 -0.30 -13.58 16 13 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 14 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 15 N -0.88 -23.19 11.32 55.43 0.63 -22.56 16 16 Si 0.91 19.49 29.54 -169.99 -5.02 14.47 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 N -0.55 -11.01 9.81 -11.82 -0.12 -11.12 16 21 C 0.29 5.38 7.41 -18.38 -0.14 5.25 16 22 Cl 0.02 0.34 27.26 -51.86 -1.41 -1.07 16 23 H 0.06 0.57 8.13 -51.92 -0.42 0.15 16 24 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 26 H 0.41 6.49 8.66 -40.82 -0.35 6.13 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.10 2.42 6.07 -51.93 -0.32 2.10 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 297.56 15.07 4.48 4.48 Total: -1.00 -27.64 297.56 -7.66 -35.30 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -2.72 Total: 1.04 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -0.02 Total: 6.24 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.22 Total: -45.65 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.71 Total: -14.53 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.47 Total: -0.28 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -1.41 Total: -1.07 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.64 -7.66 -35.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092640140.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.765 kcal (2) G-P(sol) polarization free energy of solvation -27.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds