Wall clock time and date at job start Tue Mar 31 2020 06:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.34967 * 117.00331 * 2 1 4 4 O 1.21704 * 119.99986 * 359.97438 * 3 2 1 5 5 C 1.41540 * 120.00002 * 179.97438 * 3 2 1 6 6 S 1.76184 * 126.12269 * 359.97423 * 5 3 2 7 7 C 1.70905 * 90.44783 * 179.97438 * 6 5 3 8 8 N 1.37777 * 124.71829 * 179.97438 * 7 6 5 9 9 C 1.46499 * 119.99872 * 179.72453 * 8 7 6 10 10 H 1.08999 * 109.47228 * 325.27728 * 9 8 7 11 11 C 1.52999 * 109.47341 * 85.27888 * 9 8 7 12 12 C 1.50706 * 109.47303 * 205.27753 * 9 8 7 13 13 H 1.07998 * 119.99769 * 0.02562 * 12 9 8 14 14 C 1.37877 * 120.00286 * 179.97438 * 12 9 8 15 15 N 1.31515 * 119.99896 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 119.99872 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47221 * 60.00660 * 16 14 12 18 18 H 1.48504 * 109.46710 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47441 * 300.00053 * 16 14 12 20 20 N 1.30255 * 110.56353 * 0.26593 * 7 6 5 21 21 C 1.30908 * 117.27721 * 359.49721 * 20 7 6 22 22 Cl 1.73602 * 123.02104 * 180.24506 * 21 20 7 23 23 H 1.09008 * 109.46722 * 60.00346 * 1 2 3 24 24 H 1.09000 * 109.47344 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47461 * 300.00837 * 1 2 3 26 26 H 0.97001 * 120.00278 * 0.02562 * 8 7 6 27 27 H 1.08999 * 109.47091 * 59.99755 * 11 9 8 28 28 H 1.08996 * 109.47098 * 180.02562 * 11 9 8 29 29 H 1.09001 * 109.46823 * 300.00095 * 11 9 8 30 30 H 0.96999 * 119.99952 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0418 1.2025 0.0000 4 8 1.3790 2.2233 -0.0005 5 6 3.4553 1.2765 0.0005 6 16 4.5669 -0.0904 0.0019 7 6 5.9012 0.9775 0.0010 8 7 7.2215 0.5837 0.0020 9 6 8.2861 1.5901 -0.0050 10 1 7.9693 2.4500 -0.5951 11 6 8.5766 2.0352 1.4296 12 6 9.5332 0.9980 -0.6095 13 1 9.5326 -0.0254 -0.9544 14 6 10.6745 1.7632 -0.7233 15 7 10.6750 3.0096 -0.3038 16 14 12.2199 1.0294 -1.4732 17 1 11.9375 0.5975 -2.8656 18 1 13.2991 2.0496 -1.4802 19 1 12.6521 -0.1421 -0.6695 20 7 5.4964 2.2156 0.0055 21 6 4.2040 2.4242 -0.0005 22 17 3.5021 4.0120 -0.0020 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 7.4462 -0.3599 0.0029 27 1 8.8934 1.1753 2.0198 28 1 9.3684 2.7843 1.4243 29 1 7.6746 2.4635 1.8669 30 1 11.4780 3.5478 -0.3835 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092640140.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:23 Heat of formation + Delta-G solvation = -58.512439 kcal Electronic energy + Delta-G solvation = -18182.507396 eV Core-core repulsion = 14937.353545 eV Total energy + Delta-G solvation = -3245.153850 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.66149 -40.77330 -38.23742 -37.45213 -37.32710 -34.77083 -31.96847 -30.78462 -28.41512 -27.37522 -26.07481 -24.01646 -22.70533 -20.75958 -20.45599 -18.98576 -18.16342 -17.88628 -17.56128 -16.95626 -16.85013 -16.29127 -16.01949 -15.40138 -14.65599 -14.50344 -14.35768 -13.95543 -13.36604 -13.31254 -12.98700 -12.80134 -12.79357 -12.69628 -12.29893 -12.22758 -12.15467 -11.69440 -11.56876 -11.28303 -11.07206 -10.81942 -10.55857 -10.43137 -8.78996 -8.19642 -6.37587 -0.87282 -0.18509 0.05395 0.97986 1.21438 1.47523 1.47951 1.55796 1.84439 1.86898 2.27234 2.48133 3.12064 3.52781 4.06517 4.22610 4.39373 4.40978 4.70798 4.77701 4.94102 5.03029 5.28072 5.32171 5.54548 5.67100 5.83600 6.06188 6.18776 6.62748 6.71755 6.88742 7.34118 8.85595 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.029923 B = 0.004111 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.518494 B = 6808.816449 C = 7468.942411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.555 3.445 4 O -0.523 6.523 5 C -0.383 4.383 6 S 0.256 5.744 7 C 0.340 3.660 8 N -0.634 5.634 9 C 0.278 3.722 10 H 0.019 0.981 11 C -0.135 4.135 12 C -0.553 4.553 13 H 0.076 0.924 14 C 0.022 3.978 15 N -0.912 5.912 16 Si 0.969 3.031 17 H -0.271 1.271 18 H -0.288 1.288 19 H -0.265 1.265 20 N -0.587 5.587 21 C 0.269 3.731 22 Cl 0.018 6.982 23 H 0.060 0.940 24 H 0.135 0.865 25 H 0.060 0.940 26 H 0.426 0.574 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.019 0.981 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.335 -8.880 1.084 16.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.273 6.273 3 C 0.402 3.598 4 O -0.415 6.415 5 C -0.510 4.510 6 S 0.506 5.494 7 C -0.029 4.029 8 N -0.266 5.266 9 C 0.173 3.827 10 H 0.037 0.963 11 C -0.194 4.194 12 C -0.591 4.591 13 H 0.094 0.906 14 C -0.179 4.179 15 N -0.549 5.549 16 Si 0.794 3.206 17 H -0.197 1.197 18 H -0.214 1.214 19 H -0.189 1.189 20 N -0.316 5.316 21 C 0.097 3.903 22 Cl 0.046 6.954 23 H 0.078 0.922 24 H 0.153 0.847 25 H 0.079 0.921 26 H 0.265 0.735 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.038 0.962 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.942 -8.945 1.111 16.602 hybrid contribution 0.484 1.119 -0.317 1.259 sum -13.458 -7.826 0.794 15.589 Atomic orbital electron populations 1.23193 0.74884 1.05754 1.02501 1.86173 1.25201 1.31240 1.84685 1.17818 0.86463 0.82270 0.73287 1.90910 1.66264 1.36015 1.48266 1.22782 0.96581 0.95973 1.35671 1.83482 0.90132 1.03907 1.71847 1.23966 0.93558 0.92117 0.93297 1.45016 0.99635 1.11449 1.70496 1.18672 0.83361 0.86645 0.93977 0.96272 1.21925 0.99693 1.00834 0.96923 1.21465 0.95841 0.99806 1.42023 0.90578 1.25686 1.01884 0.95025 0.95342 1.70020 1.29974 1.08548 1.46397 0.85439 0.78085 0.78090 0.78998 1.19651 1.21412 1.18927 1.65680 1.14375 1.20912 1.30620 1.20781 0.87127 0.88718 0.93715 1.98410 1.80731 1.20535 1.95675 0.92156 0.84692 0.92124 0.73454 0.94112 0.91191 0.96229 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.45 113.37 1.18 1.69 16 2 O -0.36 -8.72 10.27 -58.84 -0.60 -9.32 16 3 C 0.55 16.94 7.72 68.63 0.53 17.47 16 4 O -0.52 -17.77 14.77 19.17 0.28 -17.49 16 5 C -0.38 -12.31 6.32 22.80 0.14 -12.17 16 6 S 0.26 6.82 22.98 -56.49 -1.30 5.52 16 7 C 0.34 11.93 8.01 179.44 1.44 13.37 16 8 N -0.63 -23.09 5.19 -334.35 -1.73 -24.82 16 9 C 0.28 12.90 2.68 44.25 0.12 13.02 16 10 H 0.02 1.06 7.74 -2.39 -0.02 1.04 16 11 C -0.13 -6.20 9.27 71.98 0.67 -5.53 16 12 C -0.55 -26.84 8.73 25.60 0.22 -26.62 16 13 H 0.08 3.41 7.74 -2.91 -0.02 3.39 16 14 C 0.02 1.10 5.30 84.65 0.45 1.55 16 15 N -0.91 -49.28 11.32 21.45 0.24 -49.04 16 16 Si 0.97 39.70 29.54 68.60 2.03 41.73 16 17 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 18 H -0.29 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 20 N -0.59 -23.47 9.81 -191.32 -1.88 -25.34 16 21 C 0.27 9.86 7.41 84.55 0.63 10.48 16 22 Cl 0.02 0.62 27.26 -2.72 -0.07 0.55 16 23 H 0.06 1.01 8.13 -2.38 -0.02 0.99 16 24 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 26 H 0.43 12.71 8.66 -92.71 -0.80 11.91 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 29 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -59.99 297.56 2.74 -57.25 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 0.39 Total: 7.72 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 5.38 Total: 13.26 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -3.37 Total: -99.21 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.32 Total: -26.81 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Atomic # 16 Polarization: 6.82 SS G_CDS: -1.30 Total: 5.52 kcal Atomic # 17 Polarization: 0.62 SS G_CDS: -0.07 Total: 0.55 kcal Total: -59.99 2.74 -57.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092640140.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.267 kcal (2) G-P(sol) polarization free energy of solvation -59.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds