Wall clock time and date at job start Tue Mar 31 2020 06:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.34964 * 116.99883 * 2 1 4 4 O 1.21714 * 120.00322 * 359.97438 * 3 2 1 5 5 C 1.41541 * 120.00108 * 179.97438 * 3 2 1 6 6 S 1.76179 * 126.11919 * 359.97438 * 5 3 2 7 7 C 1.70909 * 90.44767 * 179.97438 * 6 5 3 8 8 N 1.37774 * 124.71748 * 179.97438 * 7 6 5 9 9 C 1.46505 * 119.99912 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47068 * 35.00271 * 9 8 7 11 11 C 1.52997 * 109.47212 * 275.00211 * 9 8 7 12 12 C 1.50699 * 109.47262 * 155.00124 * 9 8 7 13 13 H 1.08000 * 119.99792 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99902 * 179.97438 * 12 9 8 15 15 N 1.31515 * 120.00126 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99745 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47438 * 0.02562 * 16 14 12 18 18 H 1.48491 * 109.47045 * 120.00577 * 16 14 12 19 19 H 1.48501 * 109.46950 * 240.00369 * 16 14 12 20 20 N 1.30251 * 110.56271 * 0.26469 * 7 6 5 21 21 C 1.30909 * 117.27763 * 359.50185 * 20 7 6 22 22 Cl 1.73599 * 123.02265 * 180.24189 * 21 20 7 23 23 H 1.09000 * 109.46726 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46961 * 299.99681 * 1 2 3 25 25 H 1.08996 * 109.46678 * 60.00366 * 1 2 3 26 26 H 0.97005 * 120.00848 * 0.02562 * 8 7 6 27 27 H 1.09002 * 109.47153 * 300.00008 * 11 9 8 28 28 H 1.08998 * 109.47533 * 59.99637 * 11 9 8 29 29 H 1.08996 * 109.47853 * 179.97438 * 11 9 8 30 30 H 0.96999 * 120.00073 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0418 1.2026 0.0000 4 8 1.3789 2.2234 -0.0005 5 6 3.4552 1.2767 0.0005 6 16 4.5669 -0.0901 0.0019 7 6 5.9012 0.9779 0.0010 8 7 7.2214 0.5840 0.0020 9 6 8.2860 1.5905 0.0016 10 1 7.9715 2.4523 0.5902 11 6 8.5709 2.0311 -1.4356 12 6 9.5354 1.0004 0.6032 13 1 9.5365 -0.0222 0.9506 14 6 10.6774 1.7657 0.7090 15 7 10.6762 3.0108 0.2855 16 14 12.2263 1.0340 1.4540 17 1 11.9682 -0.3740 1.8491 18 1 13.3232 1.0739 0.4538 19 1 12.6191 1.8204 2.6510 20 7 5.4963 2.2158 0.0055 21 6 4.2039 2.4244 -0.0005 22 17 3.5019 4.0121 -0.0019 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 7.4462 -0.3596 0.0029 27 1 8.8855 1.1692 -2.0242 28 1 7.6673 2.4579 -1.8707 29 1 9.3627 2.7802 -1.4359 30 1 11.4795 3.5493 0.3603 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092640141.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:27 Heat of formation + Delta-G solvation = -42.135084 kcal Electronic energy + Delta-G solvation = -18182.051534 eV Core-core repulsion = 14937.607858 eV Total energy + Delta-G solvation = -3244.443675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.40880 -39.42759 -36.83086 -36.20959 -35.84001 -33.01630 -30.49660 -29.19225 -27.41648 -25.54064 -24.64782 -22.63407 -21.16808 -19.41150 -19.01794 -17.52227 -16.83512 -16.41283 -16.40385 -15.47993 -15.20573 -14.91042 -14.64615 -13.91345 -13.39362 -13.18944 -12.73611 -12.41894 -12.21348 -11.77599 -11.69232 -11.25266 -11.12674 -10.98197 -10.88420 -10.67646 -10.53861 -10.41202 -10.24337 -9.75278 -9.42222 -9.28797 -9.10494 -8.67176 -7.38806 -6.31498 -4.43135 0.48681 1.13144 1.39130 2.31715 2.56380 2.96457 3.13628 3.20503 3.22173 3.24097 3.71476 4.20367 4.92309 5.01944 5.10048 5.17286 5.28315 5.48681 5.60367 6.45961 6.50531 6.74301 6.82553 6.96428 7.23109 7.42109 7.61244 7.81553 7.89655 7.93204 8.20079 8.61226 9.24631 10.74148 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.029970 B = 0.004110 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.028187 B = 6810.715982 C = 7471.819068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.358 6.358 3 C 0.554 3.446 4 O -0.506 6.506 5 C -0.376 4.376 6 S 0.150 5.850 7 C 0.367 3.633 8 N -0.630 5.630 9 C 0.265 3.735 10 H 0.062 0.938 11 C -0.148 4.148 12 C -0.544 4.544 13 H 0.065 0.935 14 C 0.071 3.929 15 N -0.878 5.878 16 Si 0.906 3.094 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.281 1.281 20 N -0.554 5.554 21 C 0.292 3.708 22 Cl 0.020 6.980 23 H 0.097 0.903 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.412 0.588 27 H 0.029 0.971 28 H 0.019 0.981 29 H 0.096 0.904 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.358 -6.364 -1.252 14.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.275 6.275 3 C 0.401 3.599 4 O -0.397 6.397 5 C -0.503 4.503 6 S 0.398 5.602 7 C -0.005 4.005 8 N -0.258 5.258 9 C 0.162 3.838 10 H 0.079 0.921 11 C -0.207 4.207 12 C -0.582 4.582 13 H 0.083 0.917 14 C -0.134 4.134 15 N -0.515 5.515 16 Si 0.733 3.267 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.207 1.207 20 N -0.282 5.282 21 C 0.119 3.881 22 Cl 0.049 6.951 23 H 0.116 0.884 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.249 0.751 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.115 0.885 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.919 -6.390 -1.259 14.468 hybrid contribution 0.431 0.421 0.353 0.699 sum -12.488 -5.969 -0.905 13.871 Atomic orbital electron populations 1.22808 0.77198 1.03203 1.02299 1.86196 1.22995 1.32959 1.85332 1.17848 0.86683 0.81711 0.73622 1.90922 1.65879 1.35150 1.47743 1.22348 0.95382 0.95022 1.37542 1.83899 0.94108 1.07598 1.74575 1.23802 0.92897 0.91236 0.92543 1.45547 1.00020 1.11726 1.68552 1.19220 0.82650 0.86964 0.94927 0.92065 1.22120 1.00728 1.01299 0.96548 1.21152 0.95181 0.99441 1.42430 0.91708 1.24861 0.98905 0.94747 0.94849 1.69891 1.29207 1.07307 1.45060 0.86320 0.82243 0.79222 0.78922 1.19635 1.20702 1.20683 1.65735 1.13234 1.19026 1.30201 1.20720 0.87221 0.88111 0.92076 1.98423 1.80859 1.20285 1.95570 0.88418 0.92302 0.92303 0.75065 0.95154 0.96188 0.88507 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.45 101.05 1.06 1.44 16 2 O -0.36 -4.91 10.27 -41.22 -0.42 -5.33 16 3 C 0.55 8.99 7.72 31.99 0.25 9.24 16 4 O -0.51 -8.91 14.77 -19.43 -0.29 -9.20 16 5 C -0.38 -6.34 6.32 -38.76 -0.25 -6.59 16 6 S 0.15 2.19 22.98 -107.50 -2.47 -0.28 16 7 C 0.37 6.59 8.01 -88.03 -0.71 5.88 16 8 N -0.63 -11.67 5.19 -57.03 -0.30 -11.97 16 9 C 0.26 6.06 2.68 -69.08 -0.19 5.87 16 10 H 0.06 1.61 7.74 -51.93 -0.40 1.20 16 11 C -0.15 -3.34 9.27 37.16 0.34 -3.00 16 12 C -0.54 -13.23 8.73 -34.44 -0.30 -13.54 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 15 N -0.88 -23.17 11.32 55.43 0.63 -22.54 16 16 Si 0.91 19.49 29.54 -169.99 -5.02 14.47 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 20 N -0.55 -11.00 9.80 -11.83 -0.12 -11.12 16 21 C 0.29 5.38 7.41 -18.38 -0.14 5.24 16 22 Cl 0.02 0.35 27.26 -51.86 -1.41 -1.07 16 23 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 25 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 26 H 0.41 6.49 8.66 -40.82 -0.35 6.14 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 2.42 6.07 -51.93 -0.32 2.10 16 30 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 297.54 15.07 4.48 4.48 Total: -1.00 -27.67 297.54 -7.66 -35.33 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -2.72 Total: 0.98 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -0.02 Total: 6.24 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.22 Total: -45.63 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.71 Total: -14.53 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.47 Total: -0.28 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.41 Total: -1.07 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.67 -7.66 -35.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092640141.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.804 kcal (2) G-P(sol) polarization free energy of solvation -27.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds