Wall clock time and date at job start Tue Mar 31 2020 06:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.34964 * 116.99883 * 2 1 4 4 O 1.21714 * 120.00322 * 359.97438 * 3 2 1 5 5 C 1.41541 * 120.00108 * 179.97438 * 3 2 1 6 6 S 1.76179 * 126.11919 * 359.97438 * 5 3 2 7 7 C 1.70909 * 90.44767 * 179.97438 * 6 5 3 8 8 N 1.37774 * 124.71748 * 179.97438 * 7 6 5 9 9 C 1.46505 * 119.99912 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47068 * 35.00271 * 9 8 7 11 11 C 1.52997 * 109.47212 * 275.00211 * 9 8 7 12 12 C 1.50699 * 109.47262 * 155.00124 * 9 8 7 13 13 H 1.08000 * 119.99792 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99902 * 179.97438 * 12 9 8 15 15 N 1.31515 * 120.00126 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99745 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47438 * 0.02562 * 16 14 12 18 18 H 1.48491 * 109.47045 * 120.00577 * 16 14 12 19 19 H 1.48501 * 109.46950 * 240.00369 * 16 14 12 20 20 N 1.30251 * 110.56271 * 0.26469 * 7 6 5 21 21 C 1.30909 * 117.27763 * 359.50185 * 20 7 6 22 22 Cl 1.73599 * 123.02265 * 180.24189 * 21 20 7 23 23 H 1.09000 * 109.46726 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46961 * 299.99681 * 1 2 3 25 25 H 1.08996 * 109.46678 * 60.00366 * 1 2 3 26 26 H 0.97005 * 120.00848 * 0.02562 * 8 7 6 27 27 H 1.09002 * 109.47153 * 300.00008 * 11 9 8 28 28 H 1.08998 * 109.47533 * 59.99637 * 11 9 8 29 29 H 1.08996 * 109.47853 * 179.97438 * 11 9 8 30 30 H 0.96999 * 120.00073 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0418 1.2026 0.0000 4 8 1.3789 2.2234 -0.0005 5 6 3.4552 1.2767 0.0005 6 16 4.5669 -0.0901 0.0019 7 6 5.9012 0.9779 0.0010 8 7 7.2214 0.5840 0.0020 9 6 8.2860 1.5905 0.0016 10 1 7.9715 2.4523 0.5902 11 6 8.5709 2.0311 -1.4356 12 6 9.5354 1.0004 0.6032 13 1 9.5365 -0.0222 0.9506 14 6 10.6774 1.7657 0.7090 15 7 10.6762 3.0108 0.2855 16 14 12.2263 1.0340 1.4540 17 1 11.9682 -0.3740 1.8491 18 1 13.3232 1.0739 0.4538 19 1 12.6191 1.8204 2.6510 20 7 5.4963 2.2158 0.0055 21 6 4.2039 2.4244 -0.0005 22 17 3.5019 4.0121 -0.0019 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 7.4462 -0.3596 0.0029 27 1 8.8855 1.1692 -2.0242 28 1 7.6673 2.4579 -1.8707 29 1 9.3627 2.7802 -1.4359 30 1 11.4795 3.5493 0.3603 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092640141.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:26 Heat of formation + Delta-G solvation = -58.604354 kcal Electronic energy + Delta-G solvation = -18182.765695 eV Core-core repulsion = 14937.607858 eV Total energy + Delta-G solvation = -3245.157836 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.66048 -40.77315 -38.23767 -37.45140 -37.32704 -34.77214 -31.96861 -30.78439 -28.41518 -27.37975 -26.07510 -24.01789 -22.70627 -20.75931 -20.45457 -18.98746 -18.16321 -17.88966 -17.56089 -16.96088 -16.84940 -16.29156 -16.01601 -15.39514 -14.66037 -14.51029 -14.35621 -13.95980 -13.36813 -13.31923 -12.99557 -12.80926 -12.78372 -12.70508 -12.31081 -12.22521 -12.12299 -11.69465 -11.56850 -11.28065 -11.05362 -10.82027 -10.57557 -10.43021 -8.78926 -8.20122 -6.37734 -0.87258 -0.18478 0.05438 0.98030 1.21455 1.45084 1.47752 1.58018 1.84430 1.86939 2.27193 2.47855 3.11869 3.52806 4.06529 4.22630 4.39372 4.41038 4.70736 4.77718 4.93837 5.02876 5.28105 5.32145 5.54927 5.66989 5.83530 6.06159 6.18767 6.63056 6.71764 6.88810 7.34021 8.85561 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.029970 B = 0.004110 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.028187 B = 6810.715982 C = 7471.819068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.555 3.445 4 O -0.523 6.523 5 C -0.383 4.383 6 S 0.256 5.744 7 C 0.340 3.660 8 N -0.634 5.634 9 C 0.277 3.723 10 H 0.020 0.980 11 C -0.135 4.135 12 C -0.550 4.550 13 H 0.076 0.924 14 C 0.021 3.979 15 N -0.912 5.912 16 Si 0.969 3.031 17 H -0.260 1.260 18 H -0.280 1.280 19 H -0.286 1.286 20 N -0.587 5.587 21 C 0.269 3.731 22 Cl 0.018 6.982 23 H 0.135 0.865 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.426 0.574 27 H 0.040 0.960 28 H 0.019 0.981 29 H 0.069 0.931 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.370 -8.904 -1.068 16.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.273 6.273 3 C 0.402 3.598 4 O -0.415 6.415 5 C -0.510 4.510 6 S 0.506 5.494 7 C -0.029 4.029 8 N -0.266 5.266 9 C 0.173 3.827 10 H 0.038 0.962 11 C -0.194 4.194 12 C -0.589 4.589 13 H 0.094 0.906 14 C -0.180 4.180 15 N -0.550 5.550 16 Si 0.794 3.206 17 H -0.183 1.183 18 H -0.206 1.206 19 H -0.212 1.212 20 N -0.316 5.316 21 C 0.097 3.903 22 Cl 0.046 6.954 23 H 0.153 0.847 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.265 0.735 27 H 0.059 0.941 28 H 0.038 0.962 29 H 0.088 0.912 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.982 -8.979 -1.076 16.651 hybrid contribution 0.498 1.144 0.294 1.282 sum -13.483 -7.834 -0.782 15.614 Atomic orbital electron populations 1.23193 0.74880 1.05754 1.02501 1.86174 1.25204 1.31233 1.84683 1.17821 0.86464 0.82271 0.73285 1.90912 1.66265 1.36013 1.48272 1.22781 0.96581 0.95975 1.35670 1.83483 0.90136 1.03909 1.71850 1.23964 0.93556 0.92113 0.93292 1.45017 0.99633 1.11449 1.70497 1.18684 0.83391 0.86670 0.93979 0.96240 1.21927 0.99687 1.00855 0.96927 1.21517 0.95631 0.99884 1.41852 0.90574 1.25687 1.01919 0.95035 0.95349 1.70032 1.29862 1.08625 1.46447 0.85335 0.78632 0.78863 0.77741 1.18349 1.20624 1.21167 1.65677 1.14375 1.20917 1.30624 1.20780 0.87125 0.88718 0.93716 1.98410 1.80726 1.20542 1.95675 0.84694 0.92162 0.92114 0.73453 0.94089 0.96239 0.91191 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.45 113.37 1.18 1.69 16 2 O -0.36 -8.71 10.27 -58.81 -0.60 -9.32 16 3 C 0.55 16.93 7.72 68.63 0.53 17.46 16 4 O -0.52 -17.77 14.77 19.14 0.28 -17.49 16 5 C -0.38 -12.31 6.32 22.80 0.14 -12.16 16 6 S 0.26 6.81 22.98 -56.49 -1.30 5.52 16 7 C 0.34 11.93 8.01 179.44 1.44 13.36 16 8 N -0.63 -23.07 5.19 -334.35 -1.74 -24.80 16 9 C 0.28 12.86 2.68 44.24 0.12 12.98 16 10 H 0.02 1.07 7.74 -2.39 -0.02 1.05 16 11 C -0.13 -6.20 9.27 71.98 0.67 -5.54 16 12 C -0.55 -26.70 8.73 25.60 0.22 -26.48 16 13 H 0.08 3.43 7.74 -2.91 -0.02 3.41 16 14 C 0.02 1.07 5.30 84.65 0.45 1.51 16 15 N -0.91 -49.25 11.32 21.45 0.24 -49.00 16 16 Si 0.97 39.74 29.54 68.60 2.03 41.77 16 17 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 18 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.29 -11.83 7.11 99.48 0.71 -11.12 16 20 N -0.59 -23.46 9.80 -191.33 -1.88 -25.33 16 21 C 0.27 9.85 7.41 84.55 0.63 10.48 16 22 Cl 0.02 0.62 27.26 -2.72 -0.07 0.55 16 23 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 25 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 26 H 0.43 12.71 8.66 -92.70 -0.80 11.91 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 30 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -60.02 297.54 2.74 -57.28 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.39 Total: 7.52 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 5.38 Total: 13.31 kcal Atomic # 7 Polarization: -95.77 SS G_CDS: -3.37 Total: -99.14 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.32 Total: -26.80 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Atomic # 16 Polarization: 6.81 SS G_CDS: -1.30 Total: 5.52 kcal Atomic # 17 Polarization: 0.62 SS G_CDS: -0.07 Total: 0.55 kcal Total: -60.02 2.74 -57.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092640141.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.320 kcal (2) G-P(sol) polarization free energy of solvation -60.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds